Wall clock time and date at job start Mon Mar 8 2021 10:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86293 * 109.47216 * 2 1 4 4 C 1.50707 * 109.46836 * 120.00061 * 2 1 3 5 5 C 1.38018 * 120.33108 * 245.00145 * 4 2 1 6 6 N 1.31977 * 120.85481 * 180.02562 * 5 4 2 7 7 C 1.32397 * 121.62351 * 359.97438 * 6 5 4 8 8 N 1.38993 * 119.70858 * 179.97438 * 7 6 5 9 9 C 1.46505 * 120.00282 * 179.97438 * 8 7 6 10 10 C 1.50696 * 112.84649 * 48.80074 * 9 8 7 11 11 C 1.38446 * 120.00834 * 189.66984 * 10 9 8 12 12 F 1.35097 * 120.02583 * 359.97438 * 11 10 9 13 13 C 1.38487 * 119.94383 * 180.02562 * 11 10 9 14 14 C 1.38171 * 119.97568 * 359.97438 * 13 11 10 15 15 C 1.38266 * 120.02697 * 0.02562 * 14 13 11 16 16 C 1.38211 * 120.01727 * 9.39966 * 10 9 8 17 17 C 1.53782 * 113.61010 * 277.49659 * 9 8 7 18 18 C 1.53778 * 87.08237 * 270.88098 * 17 9 8 19 19 H 1.08996 * 113.69003 * 220.00787 * 18 17 9 20 20 O 1.42906 * 113.61230 * 89.11847 * 18 17 9 21 21 C 1.53776 * 87.08148 * 334.57196 * 18 17 9 22 22 C 1.39139 * 120.58601 * 359.97438 * 7 6 5 23 23 C 1.38305 * 119.09902 * 0.02562 * 22 7 6 24 24 H 0.96699 * 113.99917 * 299.99830 * 1 2 3 25 25 H 1.08997 * 109.47188 * 240.00027 * 2 1 3 26 26 H 1.48497 * 110.00015 * 299.99910 * 3 2 1 27 27 H 1.48505 * 109.99843 * 61.31659 * 3 2 1 28 28 H 1.08002 * 119.57577 * 359.97438 * 5 4 2 29 29 H 0.97001 * 119.99960 * 359.97438 * 8 7 6 30 30 H 1.08004 * 120.00792 * 180.02562 * 13 11 10 31 31 H 1.08004 * 119.98573 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.97530 * 179.97438 * 15 14 13 33 33 H 1.08000 * 119.98956 * 359.97438 * 16 10 9 34 34 H 1.09002 * 113.61733 * 25.43415 * 17 9 8 35 35 H 1.09007 * 113.61100 * 156.33246 * 17 9 8 36 36 H 0.96701 * 113.99704 * 82.50211 * 20 18 17 37 37 H 1.09003 * 113.61451 * 270.88292 * 21 18 17 38 38 H 1.09000 * 113.69445 * 139.99323 * 21 18 17 39 39 H 1.07999 * 120.45538 * 180.02562 * 22 7 6 40 40 H 1.07998 * 120.74473 * 179.72840 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.6382 -0.0201 2.1942 6 7 3.0833 -0.6321 3.2755 7 6 2.8715 -1.9230 3.4794 8 7 3.3588 -2.5273 4.6324 9 6 3.1277 -3.9552 4.8648 10 6 3.4739 -4.8060 3.6702 11 6 3.1278 -6.1464 3.6511 12 9 2.4801 -6.6924 4.7035 13 6 3.4472 -6.9272 2.5529 14 6 4.1102 -6.3678 1.4774 15 6 4.4552 -5.0290 1.4976 16 6 4.1321 -4.2474 2.5909 17 6 1.7464 -4.2658 5.4652 18 6 2.3955 -4.0913 6.8483 19 1 2.0544 -4.8168 7.5868 20 8 2.3586 -2.7473 7.3325 21 6 3.7292 -4.4700 6.1831 22 6 2.1654 -2.6801 2.5498 23 6 1.6866 -2.0661 1.4067 24 1 -0.3933 0.4417 0.7651 25 1 1.7924 -0.5138 -0.8900 26 1 1.5615 2.4678 -1.2085 27 1 1.5878 2.4585 1.2243 28 1 2.8304 1.0343 2.0613 29 1 3.8520 -2.0036 5.2831 30 1 3.1773 -7.9729 2.5367 31 1 4.3596 -6.9767 0.6210 32 1 4.9738 -4.5927 0.6567 33 1 4.3979 -3.2007 2.6035 34 1 0.9922 -3.5121 5.2386 35 1 1.4034 -5.2817 5.2688 36 1 1.5222 -2.5032 7.7520 37 1 3.9283 -5.5416 6.1830 38 1 4.5768 -3.8820 6.5353 39 1 1.9934 -3.7329 2.7185 40 1 1.1390 -2.6293 0.6656 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17639086_13915762.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:21 Heat of formation + Delta-G solvation = 9.160753 kcal Electronic energy + Delta-G solvation = -27483.611694 eV Core-core repulsion = 23567.795815 eV Total energy + Delta-G solvation = -3915.815880 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.13682 -42.30551 -40.75583 -39.47440 -38.06602 -36.61277 -34.73370 -33.55877 -31.90794 -31.36761 -31.15989 -27.12600 -26.75196 -25.46398 -24.84887 -23.56898 -22.96145 -22.40141 -20.71390 -19.13792 -18.59374 -18.40535 -18.15911 -17.77723 -17.26488 -17.06087 -16.76785 -16.44260 -16.32515 -16.00732 -15.73291 -15.50180 -15.35415 -15.03270 -14.66400 -14.50003 -14.28848 -14.05398 -13.79390 -13.60566 -13.50978 -13.25537 -13.00165 -12.53726 -12.47474 -12.36580 -12.04089 -11.93992 -11.78101 -11.21093 -10.86341 -10.72947 -10.56907 -10.42731 -9.80295 -9.64080 -8.72635 -4.91786 0.04795 0.08185 0.27279 0.43605 1.33008 1.59961 1.89618 1.96075 2.51122 2.78495 3.01395 3.19706 3.26081 3.41631 3.45930 3.51727 3.64008 3.72517 3.73393 3.80540 3.95259 4.04298 4.08967 4.27963 4.32308 4.35233 4.37780 4.58450 4.59215 4.68043 4.73566 4.80881 4.83492 4.87694 4.92983 4.98659 5.02422 5.10529 5.29848 5.32351 5.44871 5.52611 5.86351 5.98228 6.47943 6.49715 6.77202 7.11042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.062 4.062 3 Si 0.757 3.243 4 C -0.227 4.227 5 C 0.142 3.858 6 N -0.560 5.560 7 C 0.402 3.598 8 N -0.687 5.687 9 C 0.206 3.794 10 C -0.132 4.132 11 C 0.094 3.906 12 F -0.136 7.136 13 C -0.157 4.157 14 C -0.085 4.085 15 C -0.131 4.131 16 C -0.078 4.078 17 C -0.189 4.189 18 C 0.089 3.911 19 H 0.090 0.910 20 O -0.563 6.563 21 C -0.123 4.123 22 C -0.234 4.234 23 C -0.014 4.014 24 H 0.384 0.616 25 H 0.127 0.873 26 H -0.299 1.299 27 H -0.285 1.285 28 H 0.167 0.833 29 H 0.411 0.589 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.396 0.604 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -3.596 -0.621 4.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.172 4.172 3 Si 0.663 3.337 4 C -0.232 4.232 5 C -0.015 4.015 6 N -0.277 5.277 7 C 0.166 3.834 8 N -0.318 5.318 9 C 0.117 3.883 10 C -0.134 4.134 11 C 0.074 3.926 12 F -0.114 7.114 13 C -0.176 4.176 14 C -0.102 4.102 15 C -0.149 4.149 16 C -0.096 4.096 17 C -0.228 4.228 18 C 0.029 3.971 19 H 0.108 0.892 20 O -0.371 6.371 21 C -0.161 4.161 22 C -0.258 4.258 23 C -0.040 4.040 24 H 0.233 0.767 25 H 0.145 0.855 26 H -0.227 1.227 27 H -0.212 1.212 28 H 0.183 0.817 29 H 0.249 0.751 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.246 0.754 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.745 -2.803 -0.697 3.984 hybrid contribution -2.138 -0.307 0.631 2.250 sum 0.607 -3.110 -0.066 3.169 Atomic orbital electron populations 1.86565 1.18778 1.80294 1.50053 1.24915 0.83093 1.11120 0.98108 0.94205 0.90470 0.72577 0.76465 1.20928 1.06520 0.95809 0.99930 1.22494 0.91818 0.99639 0.87540 1.67169 1.26933 1.09290 1.24346 1.18419 0.89630 0.88302 0.87086 1.44031 1.59889 1.07351 1.20511 1.19809 0.97358 0.79488 0.91632 1.19829 1.03058 0.92698 0.97804 1.17467 0.98018 0.91071 0.86028 1.91375 1.78808 1.85804 1.55419 1.21418 1.01624 1.01509 0.93020 1.21385 0.95505 0.95158 0.98186 1.21464 1.00370 0.94251 0.98803 1.21073 0.95827 1.00026 0.92696 1.24543 0.96173 1.04370 0.97737 1.22599 0.96091 0.84624 0.93767 0.89239 1.86400 1.42408 1.28763 1.79542 1.23427 0.97827 1.02968 0.91878 1.21880 1.05452 1.01694 0.96791 1.21318 0.93347 0.93574 0.95755 0.76716 0.85515 1.22676 1.21169 0.81655 0.75132 0.83004 0.82496 0.83711 0.86019 0.91460 0.86315 0.75368 0.86293 0.89681 0.84319 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.60 12.84 -148.98 -1.91 -3.51 16 2 C -0.06 0.02 2.82 71.24 0.20 0.22 16 3 Si 0.76 -0.92 29.91 68.60 2.05 1.13 16 4 C -0.23 -0.36 5.36 -19.76 -0.11 -0.46 16 5 C 0.14 0.47 9.84 84.62 0.83 1.31 16 6 N -0.56 -3.91 10.39 -193.27 -2.01 -5.92 16 7 C 0.40 2.12 5.87 133.07 0.78 2.90 16 8 N -0.69 -2.29 4.56 -305.93 -1.40 -3.69 16 9 C 0.21 0.20 0.87 3.38 0.00 0.21 16 10 C -0.13 -0.13 3.36 -19.82 -0.07 -0.20 16 11 C 0.09 0.04 6.72 22.38 0.15 0.19 16 12 F -0.14 -0.10 12.93 44.97 0.58 0.48 16 13 C -0.16 0.34 10.03 22.31 0.22 0.56 16 14 C -0.08 0.33 10.04 22.26 0.22 0.55 16 15 C -0.13 0.29 10.04 22.27 0.22 0.52 16 16 C -0.08 -0.07 6.60 22.26 0.15 0.08 16 17 C -0.19 -0.04 6.74 31.12 0.21 0.17 16 18 C 0.09 -0.12 5.28 31.12 0.16 0.05 16 19 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 20 O -0.56 -0.17 12.91 -148.98 -1.92 -2.10 16 21 C -0.12 0.08 6.87 31.12 0.21 0.29 16 22 C -0.23 -0.81 6.70 22.50 0.15 -0.66 16 23 C -0.01 -0.03 9.83 22.44 0.22 0.19 16 24 H 0.38 -0.73 8.70 -74.06 -0.64 -1.38 16 25 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 26 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 27 H -0.28 -0.88 7.01 99.48 0.70 -0.18 16 28 H 0.17 -0.05 4.85 -2.91 -0.01 -0.07 16 29 H 0.41 1.81 8.54 -92.71 -0.79 1.02 16 30 H 0.15 -0.83 8.06 -2.91 -0.02 -0.85 16 31 H 0.16 -1.36 8.06 -2.91 -0.02 -1.38 16 32 H 0.15 -0.80 8.06 -2.91 -0.02 -0.82 16 33 H 0.12 0.37 5.43 -2.91 -0.02 0.36 16 34 H 0.07 0.19 8.14 -2.39 -0.02 0.18 16 35 H 0.12 -0.03 5.23 -2.38 -0.01 -0.04 16 36 H 0.40 -2.46 9.12 -74.06 -0.68 -3.14 16 37 H 0.12 -0.25 6.93 -2.39 -0.02 -0.26 16 38 H 0.08 0.01 8.12 -2.39 -0.02 -0.01 16 39 H 0.14 0.46 4.77 -2.91 -0.01 0.45 16 40 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 Total: 0.00 -13.69 322.79 -1.99 -15.67 By element: Atomic # 1 Polarization: -7.02 SS G_CDS: -0.95 Total: -7.97 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 3.57 Total: 5.90 kcal Atomic # 7 Polarization: -6.21 SS G_CDS: -3.40 Total: -9.61 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: -3.84 Total: -5.61 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.58 Total: 0.48 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.05 Total: 1.13 kcal Total: -13.69 -1.99 -15.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_13915762.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.833 kcal (2) G-P(sol) polarization free energy of solvation -13.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds