Wall clock time and date at job start Mon Mar 8 2021 10:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47053 * 2 1 4 4 C 1.50695 * 109.47288 * 120.00387 * 2 1 3 5 5 C 1.33326 * 125.95251 * 65.00422 * 4 2 1 6 6 N 1.32121 * 114.57947 * 179.97438 * 5 4 2 7 7 C 1.29685 * 116.86771 * 359.97438 * 6 5 4 8 8 N 1.38609 * 124.95317 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99832 * 0.02618 * 8 7 6 10 10 C 1.50697 * 112.84663 * 309.39043 * 9 8 7 11 11 C 1.38443 * 120.01500 * 170.33150 * 10 9 8 12 12 F 1.35104 * 120.02028 * 359.97438 * 11 10 9 13 13 C 1.38475 * 119.95106 * 180.02562 * 11 10 9 14 14 C 1.38180 * 119.97746 * 0.02562 * 13 11 10 15 15 C 1.38274 * 120.02025 * 359.97438 * 14 13 11 16 16 C 1.38221 * 120.05497 * 359.72795 * 15 14 13 17 17 C 1.53775 * 113.61375 * 178.19571 * 9 8 7 18 18 C 1.53785 * 87.07897 * 270.88118 * 17 9 8 19 19 H 1.09001 * 113.61075 * 220.01954 * 18 17 9 20 20 O 1.42895 * 113.61462 * 89.20650 * 18 17 9 21 21 C 1.53777 * 113.61549 * 80.58289 * 9 8 7 22 22 S 1.70971 * 110.10202 * 0.24335 * 7 6 5 23 23 H 0.96706 * 113.99803 * 299.99511 * 1 2 3 24 24 H 1.08999 * 109.46876 * 240.00450 * 2 1 3 25 25 H 1.48498 * 110.00302 * 178.68210 * 3 2 1 26 26 H 1.48500 * 110.00326 * 300.00586 * 3 2 1 27 27 H 1.07994 * 122.71013 * 0.02562 * 5 4 2 28 28 H 0.97005 * 120.00298 * 179.74759 * 8 7 6 29 29 H 1.07995 * 120.01354 * 179.97438 * 13 11 10 30 30 H 1.07996 * 119.98998 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.97196 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.99038 * 180.27525 * 16 15 14 33 33 H 1.08997 * 113.61856 * 25.43321 * 17 9 8 34 34 H 1.09001 * 113.61441 * 156.33474 * 17 9 8 35 35 H 0.96698 * 114.00115 * 179.97438 * 20 18 17 36 36 H 1.09001 * 113.61862 * 203.66333 * 21 9 8 37 37 H 1.08996 * 113.61512 * 334.57292 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7623 -2.0026 1.5120 6 7 2.2984 -2.3906 2.6555 7 6 2.9126 -1.4852 3.3519 8 7 3.5323 -1.7065 4.5718 9 6 3.5238 -3.0458 5.1655 10 6 2.1454 -3.6524 5.2209 11 6 1.9882 -4.9840 5.5656 12 9 3.0704 -5.7405 5.8519 13 6 0.7210 -5.5402 5.6156 14 6 -0.3849 -4.7660 5.3210 15 6 -0.2267 -3.4362 4.9769 16 6 1.0372 -2.8783 4.9326 17 6 4.2899 -3.1348 6.4958 18 6 5.5424 -3.4542 5.6626 19 1 6.1756 -4.2240 6.1037 20 8 6.2754 -2.2943 5.2634 21 6 4.5879 -3.9872 4.5772 22 16 2.8400 0.0228 2.5496 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7704 0.0321 26 1 1.5614 2.4680 -1.2084 27 1 1.2310 -2.6778 0.8578 28 1 3.9753 -0.9754 5.0305 29 1 0.5973 -6.5790 5.8840 30 1 -1.3732 -5.1997 5.3595 31 1 -1.0917 -2.8317 4.7472 32 1 1.1592 -1.8384 4.6681 33 1 4.3505 -2.1861 7.0292 34 1 3.9666 -3.9590 7.1316 35 1 7.0645 -2.4888 4.7393 36 1 4.3460 -5.0441 4.6894 37 1 4.8889 -3.7262 3.5627 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17639086_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:26 Heat of formation + Delta-G solvation = 9.495018 kcal Electronic energy + Delta-G solvation = -25797.170583 eV Core-core repulsion = 21970.521444 eV Total energy + Delta-G solvation = -3826.649138 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.99480 -41.78737 -40.25205 -39.33608 -37.87379 -36.58605 -34.53063 -31.92188 -31.25090 -31.12836 -27.16007 -26.74471 -25.77825 -24.48667 -23.57833 -22.68916 -21.51551 -20.14301 -19.71555 -18.71010 -18.22906 -18.01485 -17.36852 -17.13720 -16.77954 -16.63884 -16.50121 -16.13813 -15.78182 -15.55283 -15.45986 -15.12004 -14.80814 -14.62041 -14.31227 -13.99287 -13.76580 -13.65973 -13.47588 -12.94374 -12.82598 -12.47446 -12.32868 -12.31346 -12.03016 -11.87629 -11.81259 -11.19262 -10.83400 -10.69663 -10.22816 -10.14709 -9.67803 -9.51657 -8.71453 -5.13523 -0.00884 0.04167 0.24084 0.35975 0.72665 1.27572 1.60173 1.92317 2.05492 2.09524 2.66298 2.92937 3.31829 3.36203 3.45228 3.48506 3.58151 3.67234 3.75074 3.92358 3.96840 4.10059 4.26292 4.38700 4.46411 4.49563 4.60451 4.61405 4.77488 4.84402 4.89217 4.91709 4.99851 5.12256 5.13180 5.26568 5.42736 5.54473 5.90752 5.97803 6.10481 6.53346 6.55378 7.06741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.009 4.009 3 Si 0.656 3.344 4 C -0.308 4.308 5 C 0.119 3.881 6 N -0.536 5.536 7 C 0.326 3.674 8 N -0.662 5.662 9 C 0.216 3.784 10 C -0.099 4.099 11 C 0.103 3.897 12 F -0.136 7.136 13 C -0.154 4.154 14 C -0.090 4.090 15 C -0.129 4.129 16 C -0.052 4.052 17 C -0.126 4.126 18 C 0.082 3.918 19 H 0.076 0.924 20 O -0.551 6.551 21 C -0.183 4.183 22 S 0.087 5.913 23 H 0.379 0.621 24 H 0.121 0.879 25 H -0.242 1.242 26 H -0.236 1.236 27 H 0.173 0.827 28 H 0.422 0.578 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.384 0.616 36 H 0.116 0.884 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 1.408 2.987 3.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.123 4.123 3 Si 0.556 3.444 4 C -0.431 4.431 5 C -0.032 4.032 6 N -0.261 5.261 7 C -0.044 4.044 8 N -0.301 5.301 9 C 0.126 3.874 10 C -0.101 4.101 11 C 0.083 3.917 12 F -0.114 7.114 13 C -0.173 4.173 14 C -0.109 4.109 15 C -0.147 4.147 16 C -0.070 4.070 17 C -0.164 4.164 18 C 0.022 3.978 19 H 0.094 0.906 20 O -0.357 6.357 21 C -0.222 4.222 22 S 0.336 5.664 23 H 0.226 0.774 24 H 0.138 0.862 25 H -0.166 1.166 26 H -0.160 1.160 27 H 0.190 0.810 28 H 0.262 0.738 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.233 0.767 36 H 0.134 0.866 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.292 2.306 2.832 3.663 hybrid contribution 0.423 -1.383 -0.878 1.692 sum 0.716 0.922 1.953 2.276 Atomic orbital electron populations 1.86518 1.16977 1.81669 1.49070 1.24086 0.84767 1.08812 0.94667 0.95004 0.82052 0.78010 0.89315 1.25567 1.15250 0.98350 1.03917 1.21345 0.96662 0.93030 0.92171 1.66710 1.18200 1.33027 1.08169 1.23698 0.95505 0.93247 0.91937 1.43625 1.58654 1.10624 1.17228 1.19741 0.90464 0.82738 0.94463 1.19568 0.95423 0.92353 1.02768 1.17312 0.83303 0.88424 1.02629 1.91368 1.53214 1.75870 1.90994 1.21080 0.90966 1.01239 1.04008 1.21014 0.98414 0.93817 0.97609 1.21171 0.97346 0.95499 1.00702 1.20753 0.91190 0.99657 0.95424 1.23450 0.93477 1.04352 0.95131 1.22710 0.92115 0.87780 0.95183 0.90649 1.86374 1.42888 1.31636 1.74815 1.24490 0.95946 1.01555 1.00173 1.83998 1.55840 1.11219 1.15362 0.77368 0.86199 1.16637 1.15983 0.81004 0.73843 0.84729 0.85105 0.85624 0.86088 0.89437 0.86810 0.76747 0.86580 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.09 12.88 -35.23 -0.45 -0.55 16 2 C -0.01 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.66 -0.33 31.07 -169.99 -5.28 -5.61 16 4 C -0.31 -0.19 5.73 -36.03 -0.21 -0.39 16 5 C 0.12 0.21 11.24 -19.14 -0.22 0.00 16 6 N -0.54 -1.36 7.73 -15.21 -0.12 -1.47 16 7 C 0.33 0.40 5.96 -87.68 -0.52 -0.12 16 8 N -0.66 -0.12 4.48 -49.88 -0.22 -0.35 16 9 C 0.22 0.13 1.13 -132.16 -0.15 -0.02 16 10 C -0.10 -0.17 4.65 -104.55 -0.49 -0.65 16 11 C 0.10 0.20 6.71 -39.42 -0.26 -0.07 16 12 F -0.14 -0.25 12.93 2.25 0.03 -0.22 16 13 C -0.15 -0.16 10.03 -39.52 -0.40 -0.56 16 14 C -0.09 -0.03 10.04 -39.59 -0.40 -0.43 16 15 C -0.13 -0.10 10.04 -39.57 -0.40 -0.50 16 16 C -0.05 -0.08 7.44 -39.59 -0.29 -0.38 16 17 C -0.13 0.07 6.88 -25.92 -0.18 -0.10 16 18 C 0.08 -0.06 5.28 -25.77 -0.14 -0.19 16 19 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 20 O -0.55 0.39 12.96 -35.23 -0.46 -0.07 16 21 C -0.18 -0.14 6.93 -25.78 -0.18 -0.32 16 22 S 0.09 0.00 20.59 -107.50 -2.21 -2.22 16 23 H 0.38 -1.30 8.70 45.56 0.40 -0.91 16 24 H 0.12 0.02 7.96 -51.93 -0.41 -0.39 16 25 H -0.24 -0.47 7.11 56.52 0.40 -0.06 16 26 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 27 H 0.17 0.19 8.06 -52.49 -0.42 -0.23 16 28 H 0.42 -0.40 8.60 -40.82 -0.35 -0.75 16 29 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 30 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 31 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 32 H 0.12 0.19 5.67 -52.49 -0.30 -0.11 16 33 H 0.09 -0.09 8.11 -51.93 -0.42 -0.51 16 34 H 0.11 -0.09 6.93 -51.93 -0.36 -0.45 16 35 H 0.38 -1.45 9.12 45.56 0.42 -1.03 16 36 H 0.12 0.15 5.22 -51.93 -0.27 -0.12 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 320.73 15.07 4.83 4.83 Total: 0.00 -5.77 320.73 -10.64 -16.40 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -3.04 Total: -7.12 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.72 Total: -3.64 kcal Atomic # 7 Polarization: -1.48 SS G_CDS: -0.34 Total: -1.82 kcal Atomic # 8 Polarization: 0.29 SS G_CDS: -0.91 Total: -0.62 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.03 Total: -0.22 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: -5.28 Total: -5.61 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -5.77 -10.64 -16.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.899 kcal (2) G-P(sol) polarization free energy of solvation -5.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds