Wall clock time and date at job start Mon Mar 8 2021 10:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47053 * 2 1 4 4 C 1.50695 * 109.47288 * 120.00387 * 2 1 3 5 5 C 1.33326 * 125.95251 * 65.00422 * 4 2 1 6 6 N 1.32121 * 114.57947 * 179.97438 * 5 4 2 7 7 C 1.29685 * 116.86771 * 359.97438 * 6 5 4 8 8 N 1.38609 * 124.95317 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99832 * 0.02618 * 8 7 6 10 10 C 1.50697 * 112.84663 * 309.39043 * 9 8 7 11 11 C 1.38443 * 120.01500 * 170.33150 * 10 9 8 12 12 F 1.35104 * 120.02028 * 359.97438 * 11 10 9 13 13 C 1.38475 * 119.95106 * 180.02562 * 11 10 9 14 14 C 1.38180 * 119.97746 * 0.02562 * 13 11 10 15 15 C 1.38274 * 120.02025 * 359.97438 * 14 13 11 16 16 C 1.38221 * 120.05497 * 359.72795 * 15 14 13 17 17 C 1.53775 * 113.61375 * 178.19571 * 9 8 7 18 18 C 1.53785 * 87.07897 * 270.88118 * 17 9 8 19 19 H 1.09001 * 113.61075 * 220.01954 * 18 17 9 20 20 O 1.42895 * 113.61462 * 89.20650 * 18 17 9 21 21 C 1.53777 * 113.61549 * 80.58289 * 9 8 7 22 22 S 1.70971 * 110.10202 * 0.24335 * 7 6 5 23 23 H 0.96706 * 113.99803 * 299.99511 * 1 2 3 24 24 H 1.08999 * 109.46876 * 240.00450 * 2 1 3 25 25 H 1.48498 * 110.00302 * 178.68210 * 3 2 1 26 26 H 1.48500 * 110.00326 * 300.00586 * 3 2 1 27 27 H 1.07994 * 122.71013 * 0.02562 * 5 4 2 28 28 H 0.97005 * 120.00298 * 179.74759 * 8 7 6 29 29 H 1.07995 * 120.01354 * 179.97438 * 13 11 10 30 30 H 1.07996 * 119.98998 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.97196 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.99038 * 180.27525 * 16 15 14 33 33 H 1.08997 * 113.61856 * 25.43321 * 17 9 8 34 34 H 1.09001 * 113.61441 * 156.33474 * 17 9 8 35 35 H 0.96698 * 114.00115 * 179.97438 * 20 18 17 36 36 H 1.09001 * 113.61862 * 203.66333 * 21 9 8 37 37 H 1.08996 * 113.61512 * 334.57292 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7623 -2.0026 1.5120 6 7 2.2984 -2.3906 2.6555 7 6 2.9126 -1.4852 3.3519 8 7 3.5323 -1.7065 4.5718 9 6 3.5238 -3.0458 5.1655 10 6 2.1454 -3.6524 5.2209 11 6 1.9882 -4.9840 5.5656 12 9 3.0704 -5.7405 5.8519 13 6 0.7210 -5.5402 5.6156 14 6 -0.3849 -4.7660 5.3210 15 6 -0.2267 -3.4362 4.9769 16 6 1.0372 -2.8783 4.9326 17 6 4.2899 -3.1348 6.4958 18 6 5.5424 -3.4542 5.6626 19 1 6.1756 -4.2240 6.1037 20 8 6.2754 -2.2943 5.2634 21 6 4.5879 -3.9872 4.5772 22 16 2.8400 0.0228 2.5496 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5138 -0.8900 25 1 3.5346 1.7704 0.0321 26 1 1.5614 2.4680 -1.2084 27 1 1.2310 -2.6778 0.8578 28 1 3.9753 -0.9754 5.0305 29 1 0.5973 -6.5790 5.8840 30 1 -1.3732 -5.1997 5.3595 31 1 -1.0917 -2.8317 4.7472 32 1 1.1592 -1.8384 4.6681 33 1 4.3505 -2.1861 7.0292 34 1 3.9666 -3.9590 7.1316 35 1 7.0645 -2.4888 4.7393 36 1 4.3460 -5.0441 4.6894 37 1 4.8889 -3.7262 3.5627 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17639086_15704118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:25 Heat of formation + Delta-G solvation = 11.833667 kcal Electronic energy + Delta-G solvation = -25797.069171 eV Core-core repulsion = 21970.521444 eV Total energy + Delta-G solvation = -3826.547727 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.078 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.08537 -41.80654 -40.30149 -39.34811 -37.87818 -36.55334 -34.53174 -31.94919 -31.28680 -31.17624 -27.18450 -26.76160 -25.80191 -24.52651 -23.62890 -22.70429 -21.52856 -20.18889 -19.72992 -18.73643 -18.19784 -18.04707 -17.41184 -17.15947 -16.81530 -16.71532 -16.53373 -16.16335 -15.82595 -15.58384 -15.46034 -15.10523 -14.86725 -14.65300 -14.36648 -14.07790 -13.79396 -13.63337 -13.44494 -12.98033 -12.86154 -12.48727 -12.46131 -12.33759 -12.04440 -11.87384 -11.82007 -11.20760 -10.85663 -10.69115 -10.26925 -10.19132 -9.73058 -9.56719 -8.75167 -5.13474 -0.06585 0.00054 0.19034 0.30834 0.67713 1.26027 1.57027 1.87982 1.98496 2.07742 2.62424 3.02147 3.26987 3.37127 3.45526 3.50608 3.59238 3.66217 3.76467 3.90776 3.94379 4.11119 4.29901 4.38303 4.44873 4.48016 4.61605 4.68534 4.71840 4.84734 4.87134 4.89796 4.93361 5.07736 5.09622 5.22076 5.39333 5.50658 5.86348 5.94925 6.12407 6.73082 6.76612 7.02916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.011 4.011 3 Si 0.730 3.270 4 C -0.306 4.306 5 C 0.104 3.896 6 N -0.556 5.556 7 C 0.317 3.683 8 N -0.657 5.657 9 C 0.213 3.787 10 C -0.106 4.106 11 C 0.086 3.914 12 F -0.139 7.139 13 C -0.162 4.162 14 C -0.093 4.093 15 C -0.134 4.134 16 C -0.061 4.061 17 C -0.123 4.123 18 C 0.090 3.910 19 H 0.087 0.913 20 O -0.560 6.560 21 C -0.183 4.183 22 S 0.115 5.885 23 H 0.395 0.605 24 H 0.117 0.883 25 H -0.273 1.273 26 H -0.272 1.272 27 H 0.172 0.828 28 H 0.427 0.573 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.397 0.603 36 H 0.109 0.891 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 1.802 3.560 4.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.125 4.125 3 Si 0.634 3.366 4 C -0.429 4.429 5 C -0.047 4.047 6 N -0.282 5.282 7 C -0.053 4.053 8 N -0.296 5.296 9 C 0.123 3.877 10 C -0.109 4.109 11 C 0.066 3.934 12 F -0.118 7.118 13 C -0.181 4.181 14 C -0.111 4.111 15 C -0.153 4.153 16 C -0.080 4.080 17 C -0.160 4.160 18 C 0.030 3.970 19 H 0.105 0.895 20 O -0.368 6.368 21 C -0.222 4.222 22 S 0.364 5.636 23 H 0.245 0.755 24 H 0.135 0.865 25 H -0.199 1.199 26 H -0.197 1.197 27 H 0.189 0.811 28 H 0.268 0.732 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.247 0.753 36 H 0.127 0.873 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.048 2.698 3.426 4.362 hybrid contribution 0.493 -1.492 -1.108 1.923 sum 0.541 1.207 2.318 2.669 Atomic orbital electron populations 1.86485 1.16892 1.82090 1.50241 1.24169 0.84933 1.09073 0.94284 0.94142 0.79042 0.76000 0.87398 1.25674 1.14845 0.98187 1.04205 1.21408 0.97336 0.93590 0.92338 1.66693 1.18873 1.33952 1.08652 1.23834 0.95531 0.93751 0.92190 1.43608 1.58419 1.10684 1.16937 1.19795 0.90067 0.82774 0.95108 1.19713 0.95989 0.92454 1.02706 1.17512 0.83643 0.88713 1.03492 1.91353 1.53404 1.75923 1.91114 1.21336 0.90888 1.02029 1.03840 1.21288 0.99210 0.93663 0.96950 1.21418 0.97577 0.95968 1.00289 1.20816 0.91619 0.99650 0.95881 1.23438 0.93203 1.04726 0.94659 1.22655 0.92116 0.87936 0.94248 0.89485 1.86341 1.43615 1.31770 1.75114 1.24437 0.96916 1.01256 0.99584 1.83847 1.55230 1.10035 1.14475 0.75543 0.86548 1.19896 1.19716 0.81065 0.73237 0.83529 0.83011 0.84202 0.86340 0.88822 0.86647 0.75269 0.87311 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.03 12.88 -148.98 -1.92 -1.95 16 2 C -0.01 0.00 2.99 71.23 0.21 0.21 16 3 Si 0.73 -0.72 31.07 68.60 2.13 1.41 16 4 C -0.31 -0.43 5.73 24.57 0.14 -0.29 16 5 C 0.10 0.45 11.24 83.54 0.94 1.39 16 6 N -0.56 -3.30 7.73 -202.03 -1.56 -4.86 16 7 C 0.32 0.93 5.96 179.32 1.07 2.00 16 8 N -0.66 -0.53 4.48 -311.72 -1.40 -1.93 16 9 C 0.21 0.40 1.13 3.38 0.00 0.40 16 10 C -0.11 -0.44 4.65 -19.82 -0.09 -0.54 16 11 C 0.09 0.39 6.71 22.38 0.15 0.54 16 12 F -0.14 -0.64 12.93 44.97 0.58 -0.06 16 13 C -0.16 -0.38 10.03 22.31 0.22 -0.15 16 14 C -0.09 -0.05 10.04 22.26 0.22 0.18 16 15 C -0.13 -0.21 10.04 22.27 0.22 0.02 16 16 C -0.06 -0.22 7.44 22.26 0.17 -0.06 16 17 C -0.12 0.13 6.88 31.12 0.21 0.34 16 18 C 0.09 -0.12 5.28 31.21 0.16 0.04 16 19 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 20 O -0.56 0.93 12.96 -148.98 -1.93 -1.00 16 21 C -0.18 -0.47 6.93 31.21 0.22 -0.25 16 22 S 0.11 -0.02 20.59 -56.49 -1.16 -1.18 16 23 H 0.39 -2.99 8.70 -74.05 -0.64 -3.63 16 24 H 0.12 0.07 7.96 -2.39 -0.02 0.06 16 25 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 26 H -0.27 -1.32 7.11 99.48 0.71 -0.61 16 27 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 28 H 0.43 -0.78 8.60 -92.70 -0.80 -1.57 16 29 H 0.15 -0.15 8.06 -2.91 -0.02 -0.17 16 30 H 0.15 -0.66 8.06 -2.91 -0.02 -0.69 16 31 H 0.14 -0.29 8.06 -2.91 -0.02 -0.31 16 32 H 0.12 0.43 5.67 -2.91 -0.02 0.42 16 33 H 0.09 -0.21 8.11 -2.39 -0.02 -0.23 16 34 H 0.12 -0.16 6.93 -2.39 -0.02 -0.18 16 35 H 0.40 -3.09 9.12 -74.06 -0.68 -3.76 16 36 H 0.11 0.43 5.22 -2.39 -0.01 0.41 16 37 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 Total: 0.00 -13.54 320.73 -2.32 -15.86 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: -0.92 Total: -10.13 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 3.85 Total: 3.83 kcal Atomic # 7 Polarization: -3.83 SS G_CDS: -2.96 Total: -6.78 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: -3.85 Total: -2.95 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.58 Total: -0.06 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.13 Total: 1.41 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.16 Total: -1.18 kcal Total: -13.54 -2.32 -15.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_15704118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.692 kcal (2) G-P(sol) polarization free energy of solvation -13.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds