Wall clock time and date at job start Mon Mar 8 2021 10:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33324 * 125.95165 * 2 1 4 4 C 1.50696 * 122.71145 * 0.05013 * 3 2 1 5 5 O 1.42902 * 109.46997 * 30.00751 * 4 3 2 6 6 Si 1.86306 * 109.47183 * 150.00311 * 4 3 2 7 7 N 1.32119 * 114.58201 * 180.02562 * 3 2 1 8 8 C 1.29693 * 116.86173 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.94769 * 180.26352 * 8 7 3 10 10 C 1.46497 * 119.99935 * 179.72183 * 9 8 7 11 11 C 1.50701 * 112.85130 * 311.19257 * 10 9 8 12 12 C 1.38437 * 120.01130 * 170.05539 * 11 10 9 13 13 F 1.35097 * 120.02942 * 0.02562 * 12 11 10 14 14 C 1.38489 * 119.94417 * 179.73246 * 12 11 10 15 15 C 1.38172 * 119.97345 * 0.56942 * 14 12 11 16 16 C 1.38269 * 120.02577 * 359.70681 * 15 14 12 17 17 C 1.38216 * 120.05441 * 359.97438 * 16 15 14 18 18 C 1.53788 * 113.61352 * 180.02562 * 10 9 8 19 19 C 1.53778 * 87.07890 * 270.88444 * 18 10 9 20 20 H 1.09000 * 113.61221 * 220.02035 * 19 18 10 21 21 O 1.42891 * 113.61876 * 89.11698 * 19 18 10 22 22 C 1.53777 * 87.08349 * 334.56579 * 19 18 10 23 23 S 1.70968 * 110.10264 * 359.97438 * 8 7 3 24 24 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46911 * 299.98704 * 1 2 3 26 26 H 1.08996 * 109.46743 * 59.98641 * 1 2 3 27 27 H 1.08998 * 109.47620 * 270.00722 * 4 3 2 28 28 H 0.96698 * 114.00104 * 59.99901 * 5 4 3 29 29 H 1.48499 * 109.99999 * 180.02562 * 6 4 3 30 30 H 1.48499 * 109.99941 * 301.32270 * 6 4 3 31 31 H 0.96998 * 119.99747 * 359.71801 * 9 8 7 32 32 H 1.07995 * 120.01159 * 180.29911 * 14 12 11 33 33 H 1.07999 * 119.98677 * 179.72888 * 15 14 12 34 34 H 1.08001 * 119.97366 * 180.02562 * 16 15 14 35 35 H 1.07995 * 119.98899 * 180.02562 * 17 16 15 36 36 H 1.08998 * 113.61382 * 25.43216 * 18 10 9 37 37 H 1.08994 * 113.61192 * 156.33701 * 18 10 9 38 38 H 0.96707 * 114.00353 * 179.97438 * 21 19 18 39 39 H 1.08998 * 113.61997 * 270.88541 * 22 19 18 40 40 H 1.09002 * 113.61712 * 139.98195 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0011 5 8 0.4819 2.5018 0.6758 6 14 2.9331 3.6145 0.8790 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0005 9 7 5.2385 -0.8927 0.0042 10 6 5.5065 -2.3329 0.0100 11 6 4.7119 -3.0719 1.0557 12 6 4.6908 -4.4561 1.0593 13 9 5.3828 -5.1453 0.1258 14 6 3.9647 -5.1339 2.0243 15 6 3.2528 -4.4280 2.9751 16 6 3.2700 -3.0454 2.9670 17 6 3.9997 -2.3679 2.0084 18 6 7.0045 -2.6807 0.0154 19 6 6.9379 -2.6451 -1.5206 20 1 7.5181 -3.4329 -2.0011 21 8 7.1894 -1.3523 -2.0748 22 6 5.4425 -2.9770 -1.3850 23 16 2.5413 -1.4261 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.6084 2.8219 -1.0262 28 1 0.5249 2.2115 1.5972 29 1 2.4036 5.0018 0.8875 30 1 3.1476 3.1446 2.2713 31 1 5.9755 -0.2621 0.0037 32 1 3.9514 -6.2138 2.0311 33 1 2.6829 -4.9563 3.7251 34 1 2.7136 -2.4945 3.7108 35 1 4.0127 -1.2880 2.0033 36 1 7.6326 -1.8994 0.4433 37 1 7.2218 -3.6690 0.4202 38 1 7.1492 -1.3237 -3.0406 39 1 5.2327 -4.0464 -1.3629 40 1 4.8094 -2.4349 -2.0875 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17639086_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:30 Heat of formation + Delta-G solvation = 6.347019 kcal Electronic energy + Delta-G solvation = -28120.055100 eV Core-core repulsion = 24137.731835 eV Total energy + Delta-G solvation = -3982.323265 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.20347 -41.83589 -40.80048 -39.57522 -37.87528 -36.65556 -34.66782 -32.45646 -32.07500 -31.48210 -29.20342 -27.18733 -26.13929 -25.45760 -24.28606 -23.88970 -22.73699 -21.09190 -20.58230 -19.02808 -18.73215 -18.34728 -17.92825 -17.59587 -17.30015 -17.01218 -16.81570 -16.54226 -16.41284 -15.65588 -15.58684 -15.54082 -15.21914 -14.81107 -14.61211 -14.18140 -13.97184 -13.91897 -13.79396 -13.65791 -13.56300 -13.39268 -13.14324 -12.72636 -12.61022 -12.45015 -12.24566 -12.04909 -11.82916 -11.68700 -11.10495 -10.82131 -10.52084 -10.47764 -10.36493 -9.76248 -9.44945 -8.52351 -4.62708 -0.07364 -0.03328 0.16246 0.28980 0.93881 1.42823 1.77965 1.85823 1.99874 2.15157 2.41191 2.86877 3.09245 3.13395 3.30259 3.34743 3.41787 3.57995 3.61290 3.73187 3.88887 4.13551 4.16313 4.23424 4.25377 4.38881 4.49340 4.57121 4.63623 4.66901 4.73133 4.78491 4.81575 4.82208 4.89726 4.94556 4.96437 5.13151 5.16939 5.31327 5.33688 5.68659 5.73509 6.32047 6.44040 6.55376 7.01448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.255 4.255 3 C 0.064 3.936 4 C -0.041 4.041 5 O -0.526 6.526 6 Si 0.720 3.280 7 N -0.533 5.533 8 C 0.314 3.686 9 N -0.660 5.660 10 C 0.201 3.799 11 C -0.134 4.134 12 C 0.114 3.886 13 F -0.131 7.131 14 C -0.152 4.152 15 C -0.082 4.082 16 C -0.123 4.123 17 C -0.070 4.070 18 C -0.121 4.121 19 C 0.086 3.914 20 H 0.078 0.922 21 O -0.547 6.547 22 C -0.194 4.194 23 S 0.121 5.879 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.374 0.626 29 H -0.261 1.261 30 H -0.268 1.268 31 H 0.422 0.578 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.385 0.615 39 H 0.120 0.880 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.390 -4.106 0.273 4.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.378 4.378 3 C -0.067 4.067 4 C -0.153 4.153 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.259 5.259 8 C -0.057 4.057 9 N -0.300 5.300 10 C 0.113 3.887 11 C -0.138 4.138 12 C 0.095 3.905 13 F -0.109 7.109 14 C -0.171 4.171 15 C -0.100 4.100 16 C -0.142 4.142 17 C -0.091 4.091 18 C -0.158 4.158 19 C 0.027 3.973 20 H 0.096 0.904 21 O -0.353 6.353 22 C -0.233 4.233 23 S 0.374 5.626 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.222 0.778 29 H -0.187 1.187 30 H -0.192 1.192 31 H 0.263 0.737 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.234 0.766 39 H 0.138 0.862 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.652 -4.023 0.911 4.443 hybrid contribution -0.746 0.158 -0.159 0.779 sum 0.905 -3.865 0.752 4.040 Atomic orbital electron populations 1.20117 0.86673 1.01483 1.03495 1.25363 1.01516 0.94089 1.16793 1.20030 0.86828 0.97065 1.02736 1.24444 0.91816 0.95512 1.03564 1.86622 1.28707 1.89032 1.28744 0.93590 0.86265 0.76416 0.81621 1.65735 1.16969 1.16249 1.26996 1.23179 0.91811 0.91449 0.99227 1.43399 1.01990 1.05036 1.79621 1.19918 0.95825 0.79458 0.93533 1.19770 1.02676 0.92084 0.99271 1.17263 0.95502 0.88430 0.89323 1.91389 1.77206 1.79470 1.62868 1.21163 0.99140 1.01184 0.95624 1.21110 0.97264 0.94056 0.97553 1.21171 0.99665 0.94462 0.98858 1.21015 0.94546 1.00587 0.92922 1.23390 0.92838 1.04134 0.95459 1.22571 0.94457 0.85840 0.94482 0.90407 1.86422 1.93497 1.29231 1.26180 1.24623 0.98907 1.03799 0.95991 1.84486 0.95825 1.09454 1.72799 0.92479 0.90353 0.90677 0.85967 0.77770 1.18680 1.19241 0.73733 0.84238 0.84607 0.85085 0.85311 0.89072 0.86682 0.76647 0.86181 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.91 36.01 0.32 0.28 16 2 C -0.26 -0.57 6.50 -36.02 -0.23 -0.80 16 3 C 0.06 0.17 5.92 -84.19 -0.50 -0.32 16 4 C -0.04 -0.07 2.94 36.00 0.11 0.04 16 5 O -0.53 -0.77 10.17 -35.23 -0.36 -1.13 16 6 Si 0.72 1.22 32.08 -169.99 -5.45 -4.23 16 7 N -0.53 -1.66 8.95 -11.36 -0.10 -1.77 16 8 C 0.31 0.67 6.26 -87.67 -0.55 0.12 16 9 N -0.66 -0.44 4.54 -49.87 -0.23 -0.67 16 10 C 0.20 -0.06 1.04 -132.16 -0.14 -0.19 16 11 C -0.13 -0.02 4.16 -104.55 -0.43 -0.46 16 12 C 0.11 0.00 6.72 -39.42 -0.26 -0.27 16 13 F -0.13 0.00 12.94 2.25 0.03 0.03 16 14 C -0.15 0.14 10.03 -39.51 -0.40 -0.25 16 15 C -0.08 0.12 10.04 -39.59 -0.40 -0.28 16 16 C -0.12 0.09 10.04 -39.58 -0.40 -0.30 16 17 C -0.07 -0.03 6.34 -39.59 -0.25 -0.28 16 18 C -0.12 0.15 6.87 -25.92 -0.18 -0.03 16 19 C 0.09 -0.13 5.28 -25.92 -0.14 -0.27 16 20 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 21 O -0.55 0.50 12.91 -35.23 -0.45 0.05 16 22 C -0.19 0.13 6.92 -25.92 -0.18 -0.05 16 23 S 0.12 0.19 18.24 -107.50 -1.96 -1.77 16 24 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.08 -0.01 6.39 -51.93 -0.33 -0.34 16 26 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.12 0.13 7.96 -51.93 -0.41 -0.28 16 28 H 0.37 -0.37 8.13 45.56 0.37 0.00 16 29 H -0.26 -1.03 7.11 56.52 0.40 -0.63 16 30 H -0.27 -1.13 7.11 56.52 0.40 -0.73 16 31 H 0.42 0.26 8.54 -40.82 -0.35 -0.09 16 32 H 0.14 -0.35 8.06 -52.49 -0.42 -0.77 16 33 H 0.14 -0.48 8.06 -52.49 -0.42 -0.91 16 34 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 35 H 0.13 0.17 5.45 -52.49 -0.29 -0.12 16 36 H 0.09 -0.10 8.12 -51.93 -0.42 -0.53 16 37 H 0.12 -0.21 6.95 -51.93 -0.36 -0.57 16 38 H 0.39 -1.57 9.12 45.56 0.42 -1.16 16 39 H 0.12 -0.09 5.20 -51.93 -0.27 -0.36 16 40 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 LS Contribution 334.62 15.07 5.04 5.04 Total: 0.00 -5.53 334.62 -10.92 -16.44 By element: Atomic # 1 Polarization: -5.14 SS G_CDS: -3.80 Total: -8.95 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.63 Total: -3.05 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -0.33 Total: -2.43 kcal Atomic # 8 Polarization: -0.27 SS G_CDS: -0.81 Total: -1.08 kcal Atomic # 9 Polarization: 0.00 SS G_CDS: 0.03 Total: 0.03 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: -5.45 Total: -4.23 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.96 Total: -1.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -5.53 -10.92 -16.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.789 kcal (2) G-P(sol) polarization free energy of solvation -5.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds