Wall clock time and date at job start Mon Mar 8 2021 10:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33324 * 125.95165 * 2 1 4 4 C 1.50696 * 122.71145 * 0.05013 * 3 2 1 5 5 O 1.42902 * 109.46997 * 30.00751 * 4 3 2 6 6 Si 1.86306 * 109.47183 * 150.00311 * 4 3 2 7 7 N 1.32119 * 114.58201 * 180.02562 * 3 2 1 8 8 C 1.29693 * 116.86173 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.94769 * 180.26352 * 8 7 3 10 10 C 1.46497 * 119.99935 * 179.72183 * 9 8 7 11 11 C 1.50701 * 112.85130 * 311.19257 * 10 9 8 12 12 C 1.38437 * 120.01130 * 170.05539 * 11 10 9 13 13 F 1.35097 * 120.02942 * 0.02562 * 12 11 10 14 14 C 1.38489 * 119.94417 * 179.73246 * 12 11 10 15 15 C 1.38172 * 119.97345 * 0.56942 * 14 12 11 16 16 C 1.38269 * 120.02577 * 359.70681 * 15 14 12 17 17 C 1.38216 * 120.05441 * 359.97438 * 16 15 14 18 18 C 1.53788 * 113.61352 * 180.02562 * 10 9 8 19 19 C 1.53778 * 87.07890 * 270.88444 * 18 10 9 20 20 H 1.09000 * 113.61221 * 220.02035 * 19 18 10 21 21 O 1.42891 * 113.61876 * 89.11698 * 19 18 10 22 22 C 1.53777 * 87.08349 * 334.56579 * 19 18 10 23 23 S 1.70968 * 110.10264 * 359.97438 * 8 7 3 24 24 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46911 * 299.98704 * 1 2 3 26 26 H 1.08996 * 109.46743 * 59.98641 * 1 2 3 27 27 H 1.08998 * 109.47620 * 270.00722 * 4 3 2 28 28 H 0.96698 * 114.00104 * 59.99901 * 5 4 3 29 29 H 1.48499 * 109.99999 * 180.02562 * 6 4 3 30 30 H 1.48499 * 109.99941 * 301.32270 * 6 4 3 31 31 H 0.96998 * 119.99747 * 359.71801 * 9 8 7 32 32 H 1.07995 * 120.01159 * 180.29911 * 14 12 11 33 33 H 1.07999 * 119.98677 * 179.72888 * 15 14 12 34 34 H 1.08001 * 119.97366 * 180.02562 * 16 15 14 35 35 H 1.07995 * 119.98899 * 180.02562 * 17 16 15 36 36 H 1.08998 * 113.61382 * 25.43216 * 18 10 9 37 37 H 1.08994 * 113.61192 * 156.33701 * 18 10 9 38 38 H 0.96707 * 114.00353 * 179.97438 * 21 19 18 39 39 H 1.08998 * 113.61997 * 270.88541 * 22 19 18 40 40 H 1.09002 * 113.61712 * 139.98195 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0011 5 8 0.4819 2.5018 0.6758 6 14 2.9331 3.6145 0.8790 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4310 -0.0005 9 7 5.2385 -0.8927 0.0042 10 6 5.5065 -2.3329 0.0100 11 6 4.7119 -3.0719 1.0557 12 6 4.6908 -4.4561 1.0593 13 9 5.3828 -5.1453 0.1258 14 6 3.9647 -5.1339 2.0243 15 6 3.2528 -4.4280 2.9751 16 6 3.2700 -3.0454 2.9670 17 6 3.9997 -2.3679 2.0084 18 6 7.0045 -2.6807 0.0154 19 6 6.9379 -2.6451 -1.5206 20 1 7.5181 -3.4329 -2.0011 21 8 7.1894 -1.3523 -2.0748 22 6 5.4425 -2.9770 -1.3850 23 16 2.5413 -1.4261 0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.6084 2.8219 -1.0262 28 1 0.5249 2.2115 1.5972 29 1 2.4036 5.0018 0.8875 30 1 3.1476 3.1446 2.2713 31 1 5.9755 -0.2621 0.0037 32 1 3.9514 -6.2138 2.0311 33 1 2.6829 -4.9563 3.7251 34 1 2.7136 -2.4945 3.7108 35 1 4.0127 -1.2880 2.0033 36 1 7.6326 -1.8994 0.4433 37 1 7.2218 -3.6690 0.4202 38 1 7.1492 -1.3237 -3.0406 39 1 5.2327 -4.0464 -1.3629 40 1 4.8094 -2.4349 -2.0875 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17639086_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:29 Heat of formation + Delta-G solvation = 9.746103 kcal Electronic energy + Delta-G solvation = -28119.907704 eV Core-core repulsion = 24137.731835 eV Total energy + Delta-G solvation = -3982.175870 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.093 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.15513 -41.80808 -40.90139 -39.48331 -37.97410 -36.61457 -34.68080 -32.49391 -32.03754 -31.40031 -29.31295 -27.11763 -26.11679 -25.53106 -24.35561 -23.83626 -22.65987 -21.07642 -20.65722 -19.05120 -18.72626 -18.26281 -18.02313 -17.56508 -17.31266 -16.99877 -16.76969 -16.64657 -16.38596 -15.78297 -15.60617 -15.49827 -15.14337 -14.77923 -14.60489 -14.31284 -13.99657 -13.95060 -13.78235 -13.71119 -13.48639 -13.43728 -13.09431 -12.80190 -12.55415 -12.44539 -12.36752 -12.00985 -11.96506 -11.67524 -11.10913 -10.77357 -10.65771 -10.57987 -10.40151 -9.69672 -9.49063 -8.61639 -4.79896 -0.12334 0.01315 0.12017 0.22656 0.82794 1.27270 1.64254 1.73187 1.81716 1.96587 2.49387 3.00843 3.15406 3.18587 3.27826 3.39700 3.44884 3.54205 3.70143 3.80183 4.01119 4.13511 4.25713 4.28338 4.30947 4.35275 4.53413 4.58760 4.68974 4.74902 4.78199 4.80923 4.83968 4.87104 4.88381 4.96417 5.03952 5.08867 5.26533 5.27270 5.40430 5.65681 5.83045 6.26461 6.41057 6.81089 6.89232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.266 4.266 3 C 0.052 3.948 4 C -0.039 4.039 5 O -0.532 6.532 6 Si 0.777 3.223 7 N -0.551 5.551 8 C 0.308 3.692 9 N -0.655 5.655 10 C 0.196 3.804 11 C -0.140 4.140 12 C 0.103 3.897 13 F -0.133 7.133 14 C -0.154 4.154 15 C -0.081 4.081 16 C -0.127 4.127 17 C -0.082 4.082 18 C -0.119 4.119 19 C 0.091 3.909 20 H 0.093 0.907 21 O -0.562 6.562 22 C -0.190 4.190 23 S 0.134 5.866 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.384 0.616 29 H -0.291 1.291 30 H -0.303 1.303 31 H 0.421 0.579 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.398 0.602 39 H 0.122 0.878 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -5.238 0.334 5.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.389 4.389 3 C -0.078 4.078 4 C -0.151 4.151 5 O -0.338 6.338 6 Si 0.682 3.318 7 N -0.279 5.279 8 C -0.062 4.062 9 N -0.295 5.295 10 C 0.108 3.892 11 C -0.144 4.144 12 C 0.084 3.916 13 F -0.111 7.111 14 C -0.173 4.173 15 C -0.098 4.098 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.032 3.968 20 H 0.110 0.890 21 O -0.370 6.370 22 C -0.229 4.229 23 S 0.387 5.613 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.234 0.766 29 H -0.218 1.218 30 H -0.230 1.230 31 H 0.261 0.739 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.550 -5.172 0.954 5.483 hybrid contribution -0.704 0.480 -0.121 0.861 sum 0.846 -4.691 0.833 4.839 Atomic orbital electron populations 1.20133 0.85771 1.01944 1.03663 1.25609 1.02285 0.94305 1.16669 1.20173 0.86905 0.97562 1.03196 1.24444 0.91712 0.95053 1.03929 1.86595 1.28563 1.89056 1.29635 0.92866 0.85524 0.73987 0.79413 1.65737 1.17330 1.16855 1.27942 1.23336 0.92453 0.91479 0.98971 1.43466 1.01486 1.05517 1.79055 1.20053 0.96520 0.78841 0.93781 1.19814 1.02832 0.92350 0.99357 1.17392 0.96049 0.88405 0.89783 1.91379 1.77312 1.79428 1.62996 1.21437 0.98566 1.02120 0.95206 1.21388 0.96948 0.93772 0.97727 1.21379 0.99382 0.95076 0.98720 1.20966 0.95534 1.00005 0.93786 1.23417 0.92016 1.04360 0.95869 1.22579 0.93901 0.86012 0.94356 0.88951 1.86391 1.93445 1.29655 1.27516 1.24584 0.99410 1.03584 0.95363 1.84376 0.95289 1.08990 1.72598 0.91857 0.89529 0.91089 0.85324 0.76620 1.21826 1.22973 0.73860 0.82672 0.82312 0.83982 0.86660 0.89278 0.86024 0.75189 0.86031 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.91 71.24 0.63 0.55 16 2 C -0.27 -1.30 6.50 24.58 0.16 -1.14 16 3 C 0.05 0.32 5.92 41.40 0.25 0.56 16 4 C -0.04 -0.15 2.94 71.23 0.21 0.06 16 5 O -0.53 -1.68 10.17 -148.98 -1.52 -3.20 16 6 Si 0.78 3.51 32.08 68.60 2.20 5.71 16 7 N -0.55 -3.99 8.95 -189.86 -1.70 -5.69 16 8 C 0.31 1.62 6.26 179.32 1.12 2.74 16 9 N -0.66 -1.51 4.54 -311.70 -1.42 -2.92 16 10 C 0.20 0.00 1.04 3.39 0.00 0.00 16 11 C -0.14 -0.10 4.16 -19.82 -0.08 -0.18 16 12 C 0.10 -0.02 6.72 22.38 0.15 0.13 16 13 F -0.13 0.04 12.94 44.97 0.58 0.62 16 14 C -0.15 0.42 10.03 22.31 0.22 0.65 16 15 C -0.08 0.32 10.04 22.26 0.22 0.55 16 16 C -0.13 0.23 10.04 22.27 0.22 0.45 16 17 C -0.08 -0.10 6.34 22.26 0.14 0.04 16 18 C -0.12 0.27 6.87 31.12 0.21 0.49 16 19 C 0.09 -0.28 5.28 31.12 0.16 -0.12 16 20 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 21 O -0.56 0.97 12.91 -148.98 -1.92 -0.95 16 22 C -0.19 0.20 6.92 31.12 0.22 0.41 16 23 S 0.13 0.50 18.24 -56.49 -1.03 -0.53 16 24 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.09 -0.04 6.39 -2.38 -0.02 -0.05 16 26 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.13 0.31 7.96 -2.39 -0.02 0.29 16 28 H 0.38 -0.64 8.13 -74.06 -0.60 -1.24 16 29 H -0.29 -2.69 7.11 99.48 0.71 -1.98 16 30 H -0.30 -3.12 7.11 99.48 0.71 -2.41 16 31 H 0.42 0.99 8.54 -92.71 -0.79 0.20 16 32 H 0.16 -0.99 8.06 -2.91 -0.02 -1.01 16 33 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 34 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 35 H 0.12 0.44 5.45 -2.91 -0.02 0.42 16 36 H 0.09 -0.16 8.12 -2.39 -0.02 -0.18 16 37 H 0.12 -0.46 6.95 -2.39 -0.02 -0.47 16 38 H 0.40 -3.24 9.12 -74.05 -0.68 -3.92 16 39 H 0.12 -0.17 5.20 -2.39 -0.01 -0.18 16 40 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 Total: 0.00 -12.93 334.62 -1.86 -14.78 By element: Atomic # 1 Polarization: -12.12 SS G_CDS: -0.90 Total: -13.02 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 3.85 Total: 5.19 kcal Atomic # 7 Polarization: -5.50 SS G_CDS: -3.11 Total: -8.61 kcal Atomic # 8 Polarization: -0.71 SS G_CDS: -3.44 Total: -4.15 kcal Atomic # 9 Polarization: 0.04 SS G_CDS: 0.58 Total: 0.62 kcal Atomic # 14 Polarization: 3.51 SS G_CDS: 2.20 Total: 5.71 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.03 Total: -0.53 kcal Total: -12.93 -1.86 -14.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.529 kcal (2) G-P(sol) polarization free energy of solvation -12.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds