Wall clock time and date at job start Mon Mar 8 2021 10:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47005 * 2 1 4 4 C 1.50696 * 109.47192 * 120.00044 * 2 1 3 5 5 C 1.37988 * 120.32520 * 245.00500 * 4 2 1 6 6 N 1.32011 * 120.89866 * 180.28095 * 5 4 2 7 7 C 1.32332 * 121.64639 * 359.46597 * 6 5 4 8 8 N 1.39143 * 119.72027 * 180.29138 * 7 6 5 9 9 C 1.46499 * 119.99665 * 0.23378 * 8 7 6 10 10 C 1.50701 * 112.85043 * 48.80403 * 9 8 7 11 11 C 1.38434 * 120.01402 * 189.38789 * 10 9 8 12 12 F 1.35101 * 120.02565 * 0.02562 * 11 10 9 13 13 C 1.38485 * 119.95045 * 179.76811 * 11 10 9 14 14 C 1.38179 * 119.97101 * 0.48575 * 13 11 10 15 15 C 1.38270 * 120.02709 * 359.79237 * 14 13 11 16 16 C 1.38220 * 120.01345 * 9.66587 * 10 9 8 17 17 C 1.53776 * 113.61739 * 277.49793 * 9 8 7 18 18 C 1.53788 * 87.08116 * 270.88547 * 17 9 8 19 19 H 1.08997 * 113.69115 * 220.01086 * 18 17 9 20 20 O 1.42892 * 113.61483 * 89.11522 * 18 17 9 21 21 C 1.53780 * 113.61492 * 179.97438 * 9 8 7 22 22 C 1.39349 * 120.56336 * 0.52848 * 7 6 5 23 23 F 1.35103 * 120.46772 * 179.72024 * 22 7 6 24 24 C 1.38444 * 119.05746 * 359.74729 * 22 7 6 25 25 H 0.96695 * 114.00388 * 299.99569 * 1 2 3 26 26 H 1.09002 * 109.46776 * 240.00108 * 2 1 3 27 27 H 1.48509 * 109.99847 * 300.00255 * 3 2 1 28 28 H 1.48507 * 110.00153 * 61.31601 * 3 2 1 29 29 H 1.08002 * 119.54703 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00259 * 180.23353 * 8 7 6 31 31 H 1.07997 * 120.01843 * 180.24905 * 13 11 10 32 32 H 1.08003 * 119.98799 * 179.76849 * 14 13 11 33 33 H 1.07996 * 119.97868 * 179.97438 * 15 14 13 34 34 H 1.08004 * 119.98911 * 359.97438 * 16 10 9 35 35 H 1.09001 * 113.61489 * 25.42756 * 17 9 8 36 36 H 1.09005 * 113.61605 * 156.33860 * 17 9 8 37 37 H 0.96700 * 114.00206 * 82.51034 * 20 18 17 38 38 H 1.09005 * 113.61793 * 203.66442 * 21 9 8 39 39 H 1.08995 * 113.61596 * 334.57445 * 21 9 8 40 40 H 1.07997 * 120.75318 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6381 -0.0201 2.1938 6 7 3.0882 -0.6322 3.2733 7 6 2.8733 -1.9214 3.4809 8 7 3.3609 -2.5248 4.6360 9 6 4.1041 -1.7321 5.6186 10 6 3.4059 -0.4472 5.9827 11 6 4.0606 0.5046 6.7454 12 9 5.3260 0.2825 7.1633 13 6 3.4195 1.6870 7.0752 14 6 2.1236 1.9110 6.6512 15 6 1.4685 0.9571 5.8943 16 6 2.1094 -0.2211 5.5601 17 6 5.5898 -1.5495 5.2661 18 6 5.8524 -2.8525 6.0394 19 1 6.7598 -2.8284 6.6428 20 8 5.7541 -4.0272 5.2318 21 6 4.5736 -2.5442 6.8371 22 6 2.1672 -2.6809 2.5501 23 9 1.9538 -3.9982 2.7613 24 6 1.6879 -2.0666 1.4058 25 1 -0.3934 0.4416 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 1.5614 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.8299 1.0344 2.0603 30 1 3.2087 -3.4702 4.7906 31 1 3.9306 2.4320 7.6667 32 1 1.6219 2.8314 6.9114 33 1 0.4556 1.1328 5.5636 34 1 1.5969 -0.9652 4.9685 35 1 5.7979 -1.6257 4.1988 36 1 6.0426 -0.6705 5.7250 37 1 6.5551 -4.2263 4.7279 38 1 4.7488 -1.9372 7.7254 39 1 3.9615 -3.4234 7.0380 40 1 1.1368 -2.6290 0.6666 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17639086_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:33 Heat of formation + Delta-G solvation = -35.276596 kcal Electronic energy + Delta-G solvation = -30246.651385 eV Core-core repulsion = 25859.454581 eV Total energy + Delta-G solvation = -4387.196803 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.112 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.05553 -49.96146 -42.05317 -40.79837 -39.36021 -38.10408 -36.59130 -34.82960 -33.21882 -31.98672 -31.29072 -31.08810 -27.10941 -26.73971 -25.78398 -24.80021 -23.50021 -23.12111 -22.47395 -20.74009 -19.53426 -18.86792 -18.41156 -18.21990 -18.12693 -17.64885 -17.32722 -17.06200 -16.91290 -16.68170 -16.27265 -16.13410 -15.91687 -15.52610 -15.38178 -15.34921 -15.10783 -14.58172 -14.36246 -14.20554 -14.07607 -13.77974 -13.60041 -13.45152 -13.35165 -12.96055 -12.66199 -12.49373 -12.30931 -12.09011 -11.89756 -11.82504 -11.25388 -10.83890 -10.69546 -10.65195 -10.56220 -9.72633 -9.55883 -8.80607 -4.90223 -0.10601 0.06847 0.19443 0.34093 1.30190 1.60456 1.83316 1.97178 2.48937 2.64818 2.98496 3.05608 3.20787 3.30081 3.41500 3.42267 3.50561 3.59124 3.64988 3.78446 3.83422 3.85459 4.00790 4.10367 4.28422 4.35074 4.44795 4.47376 4.53021 4.62737 4.69081 4.72299 4.87282 4.90537 4.95295 4.96255 5.00041 5.07613 5.16940 5.37536 5.40659 5.49542 5.94350 5.97701 6.14407 6.50221 6.79279 6.94729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.065 4.065 3 Si 0.757 3.243 4 C -0.197 4.197 5 C 0.142 3.858 6 N -0.506 5.506 7 C 0.384 3.616 8 N -0.684 5.684 9 C 0.209 3.791 10 C -0.099 4.099 11 C 0.090 3.910 12 F -0.138 7.138 13 C -0.158 4.158 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.064 4.064 17 C -0.176 4.176 18 C 0.087 3.913 19 H 0.089 0.911 20 O -0.564 6.564 21 C -0.129 4.129 22 C -0.036 4.036 23 F -0.142 7.142 24 C -0.039 4.039 25 H 0.386 0.614 26 H 0.128 0.872 27 H -0.299 1.299 28 H -0.273 1.273 29 H 0.177 0.823 30 H 0.419 0.581 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.397 0.603 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 2.479 0.892 3.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.175 4.175 3 Si 0.662 3.338 4 C -0.203 4.203 5 C -0.016 4.016 6 N -0.223 5.223 7 C 0.147 3.853 8 N -0.317 5.317 9 C 0.121 3.879 10 C -0.101 4.101 11 C 0.071 3.929 12 F -0.116 7.116 13 C -0.176 4.176 14 C -0.110 4.110 15 C -0.156 4.156 16 C -0.083 4.083 17 C -0.215 4.215 18 C 0.028 3.972 19 H 0.106 0.894 20 O -0.372 6.372 21 C -0.166 4.166 22 C -0.063 4.063 23 F -0.121 7.121 24 C -0.066 4.066 25 H 0.236 0.764 26 H 0.146 0.854 27 H -0.227 1.227 28 H -0.199 1.199 29 H 0.193 0.807 30 H 0.258 0.742 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.247 0.753 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.155 3.450 1.385 4.297 hybrid contribution -1.005 -1.432 -0.387 1.792 sum 1.149 2.018 0.998 2.527 Atomic orbital electron populations 1.86592 1.18421 1.80335 1.50181 1.24988 0.83377 1.11417 0.97697 0.94150 0.90433 0.72139 0.77123 1.20858 1.05351 0.94029 1.00035 1.22703 0.91460 1.00269 0.87141 1.67693 1.24778 1.06839 1.22964 1.18462 0.90712 0.89208 0.86957 1.44156 1.58346 1.11601 1.17582 1.19753 0.90340 0.88344 0.89448 1.19638 0.95319 0.95881 0.99279 1.17462 0.79937 0.95769 0.99779 1.91363 1.37141 1.94822 1.88298 1.21339 0.96637 0.96461 1.03195 1.21265 0.93566 0.99924 0.96197 1.21374 1.00974 0.93925 0.99313 1.20759 0.93312 0.97410 0.96794 1.24359 0.94861 1.00569 1.01710 1.22640 0.98176 0.84326 0.92057 0.89362 1.86372 1.43982 1.43782 1.63057 1.23489 0.96703 1.00081 0.96375 1.18144 1.09713 0.79316 0.99108 1.91471 1.93819 1.31824 1.95024 1.21401 0.95473 0.94891 0.94801 0.76438 0.85431 1.22732 1.19912 0.80692 0.74187 0.83265 0.82977 0.84557 0.87170 0.91494 0.86825 0.75262 0.86532 0.89828 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.20 12.84 -148.98 -1.91 -2.11 16 2 C -0.07 0.18 2.82 71.23 0.20 0.38 16 3 Si 0.76 -2.95 29.91 68.60 2.05 -0.89 16 4 C -0.20 0.22 5.36 -19.77 -0.11 0.11 16 5 C 0.14 -0.05 9.84 84.61 0.83 0.78 16 6 N -0.51 -1.60 6.60 -193.03 -1.27 -2.87 16 7 C 0.38 1.56 5.41 133.09 0.72 2.28 16 8 N -0.68 -2.18 4.54 -305.68 -1.39 -3.56 16 9 C 0.21 0.48 1.08 3.38 0.00 0.48 16 10 C -0.10 -0.34 4.50 -19.82 -0.09 -0.43 16 11 C 0.09 0.27 6.71 22.38 0.15 0.42 16 12 F -0.14 -0.40 12.93 44.97 0.58 0.18 16 13 C -0.16 -0.07 10.03 22.31 0.22 0.16 16 14 C -0.09 0.10 10.04 22.26 0.22 0.32 16 15 C -0.14 -0.08 10.04 22.27 0.22 0.14 16 16 C -0.06 -0.21 7.20 22.26 0.16 -0.05 16 17 C -0.18 -0.25 6.92 31.12 0.22 -0.04 16 18 C 0.09 -0.07 5.28 31.14 0.16 0.10 16 19 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 20 O -0.56 -0.01 12.91 -148.98 -1.92 -1.94 16 21 C -0.13 -0.05 6.87 31.14 0.21 0.17 16 22 C -0.04 -0.16 7.35 22.59 0.17 0.01 16 23 F -0.14 -0.95 16.65 44.97 0.75 -0.20 16 24 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 25 H 0.39 -2.00 8.70 -74.06 -0.64 -2.65 16 26 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 27 H -0.30 -1.20 7.11 99.48 0.71 -0.49 16 28 H -0.27 0.26 7.01 99.48 0.70 0.96 16 29 H 0.18 -0.73 4.84 -2.91 -0.01 -0.75 16 30 H 0.42 1.42 7.89 -92.71 -0.73 0.69 16 31 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 32 H 0.15 -0.89 8.06 -2.91 -0.02 -0.92 16 33 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 34 H 0.11 0.53 5.54 -2.91 -0.02 0.51 16 35 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.11 0.20 5.25 -2.38 -0.01 0.19 16 37 H 0.40 -2.67 9.12 -74.06 -0.68 -3.35 16 38 H 0.12 -0.07 6.90 -2.38 -0.02 -0.09 16 39 H 0.08 0.07 8.12 -2.39 -0.02 0.05 16 40 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: 0.00 -13.37 332.59 -0.47 -13.84 By element: Atomic # 1 Polarization: -6.55 SS G_CDS: -0.88 Total: -7.43 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 3.52 Total: 4.99 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -2.66 Total: -6.43 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -3.84 Total: -4.05 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 1.33 Total: -0.02 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.05 Total: -0.89 kcal Total: -13.37 -0.47 -13.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17639086_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.440 kcal (2) G-P(sol) polarization free energy of solvation -13.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds