Wall clock time and date at job start Mon Mar 8 2021 08:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.53007 * 109.46889 * 239.99852 * 2 1 3 5 5 C 1.53000 * 109.47038 * 120.00772 * 2 1 3 6 6 H 1.09000 * 112.84739 * 292.42100 * 5 2 1 7 7 C 1.53780 * 113.61943 * 63.62018 * 5 2 1 8 8 C 1.53784 * 87.08195 * 140.06631 * 7 5 2 9 9 H 1.08994 * 113.61545 * 219.93693 * 8 7 5 10 10 N 1.46494 * 113.61621 * 89.11509 * 8 7 5 11 11 C 1.38613 * 120.00405 * 155.00271 * 10 8 7 12 12 N 1.29689 * 124.94398 * 0.02562 * 11 10 8 13 13 C 1.32121 * 116.86360 * 179.97438 * 12 11 10 14 14 C 1.33329 * 114.58093 * 0.02562 * 13 12 11 15 15 C 1.50695 * 125.95221 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47347 * 300.00132 * 15 14 13 17 17 Si 1.86298 * 109.47311 * 179.97438 * 15 14 13 18 18 S 1.70967 * 124.95261 * 180.34490 * 11 10 8 19 19 C 1.53778 * 113.69099 * 161.16146 * 5 2 1 20 20 H 1.09004 * 109.47102 * 299.99685 * 1 2 3 21 21 H 1.08995 * 109.47218 * 59.99251 * 1 2 3 22 22 H 1.08995 * 109.47670 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47087 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47070 * 300.00317 * 3 2 1 25 25 H 1.09004 * 109.46659 * 60.00044 * 3 2 1 26 26 H 1.08997 * 109.47099 * 293.51551 * 4 2 1 27 27 H 1.09005 * 109.46464 * 53.51486 * 4 2 1 28 28 H 1.08993 * 109.47096 * 173.51438 * 4 2 1 29 29 H 1.08996 * 113.61167 * 25.51661 * 7 5 2 30 30 H 1.08998 * 113.69224 * 254.62342 * 7 5 2 31 31 H 0.97006 * 120.00101 * 335.00571 * 10 8 7 32 32 H 1.07996 * 122.70751 * 180.02562 * 13 12 11 33 33 H 1.09000 * 109.46687 * 60.00388 * 15 14 13 34 34 H 0.96693 * 114.00033 * 300.00021 * 16 15 14 35 35 H 1.48499 * 109.99914 * 58.68312 * 17 15 14 36 36 H 1.48497 * 110.00435 * 180.02562 * 17 15 14 37 37 H 1.09004 * 113.61846 * 105.45685 * 19 5 2 38 38 H 1.09000 * 113.61357 * 334.55288 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.8198 -0.1808 2.1697 7 6 1.6551 -2.2094 1.3016 8 6 3.0647 -2.4735 1.8568 9 1 3.5293 -3.3751 1.4577 10 7 3.1453 -2.3906 3.3171 11 6 4.1396 -3.0771 3.9965 12 7 5.0454 -3.8181 3.4377 13 6 5.9188 -4.4003 4.2401 14 6 5.7418 -4.1392 5.5355 15 6 6.5849 -4.6668 6.6676 16 8 6.5329 -6.0948 6.6749 17 14 5.9321 -4.0128 8.2853 18 16 4.3457 -3.0765 5.6937 19 6 3.5025 -1.1844 1.1415 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4423 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.7745 -1.7770 -1.1931 27 1 1.5848 -0.2788 -2.1354 28 1 3.1237 -0.6219 -1.3093 29 1 1.4827 -2.6506 0.3200 30 1 0.8579 -2.4308 2.0111 31 1 2.5029 -1.8553 3.8088 32 1 6.7121 -5.0363 3.8760 33 1 7.6167 -4.3414 6.5345 34 1 5.6431 -6.4554 6.7898 35 1 4.5159 -4.4222 8.4642 36 1 6.7554 -4.5254 9.4098 37 1 4.1967 -0.5770 1.7224 38 1 3.8351 -1.3454 0.1161 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17664194_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:00:52 Heat of formation + Delta-G solvation = 34.937576 kcal Electronic energy + Delta-G solvation = -18560.119166 eV Core-core repulsion = 15724.538791 eV Total energy + Delta-G solvation = -2835.580375 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43011 -40.40271 -38.04516 -36.93352 -34.24040 -31.10471 -28.56071 -28.30216 -26.87401 -26.29979 -25.96385 -24.33717 -21.86787 -20.61729 -19.63827 -19.08742 -18.02635 -17.19289 -16.63082 -16.40898 -16.27256 -15.93150 -15.51788 -15.45416 -15.10488 -14.89865 -14.38634 -13.88935 -13.86384 -13.59871 -13.32202 -12.92950 -12.89275 -12.71706 -12.50786 -12.34934 -12.11846 -11.98201 -11.95976 -11.42589 -11.39066 -11.01848 -10.90325 -10.79541 -10.21265 -10.15876 -8.70583 -5.04635 -0.00167 0.05682 0.72004 1.26423 1.56933 1.91687 2.06240 2.13101 3.35722 3.44880 3.47843 3.62213 3.75118 3.80466 3.95685 3.98907 4.20497 4.21714 4.47658 4.55761 4.63272 4.67239 4.70069 4.72812 4.75208 4.78298 4.87282 4.93440 4.96160 5.04813 5.05564 5.12142 5.15034 5.27077 5.32429 5.40970 5.50360 5.92132 6.08517 6.37303 7.04739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.099 4.099 6 H 0.086 0.914 7 C -0.145 4.145 8 C 0.135 3.865 9 H 0.104 0.896 10 N -0.674 5.674 11 C 0.329 3.671 12 N -0.550 5.550 13 C 0.120 3.880 14 C -0.306 4.306 15 C -0.016 4.016 16 O -0.526 6.526 17 Si 0.653 3.347 18 S 0.086 5.914 19 C -0.151 4.151 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.176 0.824 33 H 0.125 0.875 34 H 0.377 0.623 35 H -0.244 1.244 36 H -0.238 1.238 37 H 0.069 0.931 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 3.171 -0.276 3.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.117 4.117 6 H 0.105 0.895 7 C -0.183 4.183 8 C 0.027 3.973 9 H 0.122 0.878 10 N -0.313 5.313 11 C -0.041 4.041 12 N -0.275 5.275 13 C -0.031 4.031 14 C -0.429 4.429 15 C -0.130 4.130 16 O -0.333 6.333 17 Si 0.553 3.447 18 S 0.335 5.665 19 C -0.190 4.190 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.251 0.749 32 H 0.193 0.807 33 H 0.143 0.857 34 H 0.224 0.776 35 H -0.168 1.168 36 H -0.161 1.161 37 H 0.088 0.912 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.469 3.424 0.518 4.253 hybrid contribution -0.100 -1.219 -0.533 1.334 sum -2.568 2.205 -0.015 3.385 Atomic orbital electron populations 1.21852 0.94465 1.01821 1.01744 1.20423 0.95494 0.95387 0.94587 1.21848 1.01091 0.95207 1.01719 1.22038 1.01207 1.00410 0.96861 1.22645 0.96064 0.94881 0.98143 0.89536 1.23494 0.96155 0.96546 1.02154 1.21882 0.97398 0.99521 0.78459 0.87830 1.43736 1.30141 1.51519 1.05879 1.23723 0.92891 0.94666 0.92867 1.66486 1.07436 1.16004 1.37544 1.21335 0.96973 0.97158 0.87673 1.25506 1.04934 1.12528 0.99924 1.24062 1.02694 0.83430 1.02793 1.86612 1.34011 1.18092 1.94543 0.95204 0.80897 0.91544 0.77091 1.83990 1.28648 1.49466 1.04388 1.23636 0.96513 0.97164 1.01708 0.92771 0.92656 0.92561 0.92589 0.92651 0.92779 0.92273 0.92627 0.92198 0.88163 0.91012 0.74902 0.80725 0.85741 0.77557 1.16789 1.16096 0.91229 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.20 8.31 37.16 0.31 0.51 16 2 C -0.06 0.09 0.68 -154.51 -0.11 -0.01 16 3 C -0.14 0.16 8.43 37.16 0.31 0.47 16 4 C -0.15 0.22 7.49 37.16 0.28 0.50 16 5 C -0.10 0.19 2.91 -89.81 -0.26 -0.07 16 6 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 7 C -0.15 0.29 6.40 -25.92 -0.17 0.12 16 8 C 0.14 -0.08 4.44 -67.12 -0.30 -0.38 16 9 H 0.10 0.12 7.66 -51.93 -0.40 -0.28 16 10 N -0.67 0.33 5.42 -54.99 -0.30 0.03 16 11 C 0.33 0.51 8.09 -87.68 -0.71 -0.20 16 12 N -0.55 -1.77 9.83 -15.21 -0.15 -1.92 16 13 C 0.12 0.26 11.22 -19.14 -0.21 0.04 16 14 C -0.31 -0.30 5.74 -36.03 -0.21 -0.51 16 15 C -0.02 0.00 2.98 36.00 0.11 0.11 16 16 O -0.53 -0.70 12.87 -35.23 -0.45 -1.15 16 17 Si 0.65 -0.27 31.06 -169.99 -5.28 -5.55 16 18 S 0.09 0.02 20.57 -107.50 -2.21 -2.19 16 19 C -0.15 0.16 7.09 -25.92 -0.18 -0.03 16 20 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 21 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 22 H 0.06 -0.08 7.56 -51.93 -0.39 -0.48 16 23 H 0.06 -0.05 8.11 -51.93 -0.42 -0.47 16 24 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.06 -0.10 6.05 -51.93 -0.31 -0.42 16 27 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.06 -0.08 6.46 -51.93 -0.34 -0.42 16 29 H 0.10 -0.21 6.09 -51.93 -0.32 -0.53 16 30 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 31 H 0.41 -1.00 8.83 -40.82 -0.36 -1.36 16 32 H 0.18 0.18 8.06 -52.49 -0.42 -0.24 16 33 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.38 -0.48 8.70 45.56 0.40 -0.08 16 35 H -0.24 -0.36 7.11 56.52 0.40 0.04 16 36 H -0.24 -0.53 7.11 56.52 0.40 -0.12 16 37 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.10 -0.11 5.70 -51.93 -0.30 -0.40 16 LS Contribution 314.07 15.07 4.73 4.73 Total: 0.00 -4.12 314.07 -10.65 -14.77 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -5.85 Total: -9.28 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.14 Total: 0.56 kcal Atomic # 7 Polarization: -1.45 SS G_CDS: -0.45 Total: -1.90 kcal Atomic # 8 Polarization: -0.70 SS G_CDS: -0.45 Total: -1.15 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: -5.28 Total: -5.55 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.21 Total: -2.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -4.12 -10.65 -14.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17664194_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.706 kcal (2) G-P(sol) polarization free energy of solvation -4.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds