Wall clock time and date at job start Mon Mar 8 2021 08:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.53007 * 109.46889 * 239.99852 * 2 1 3 5 5 C 1.53000 * 109.47038 * 120.00772 * 2 1 3 6 6 H 1.09000 * 112.84739 * 292.42100 * 5 2 1 7 7 C 1.53780 * 113.61943 * 63.62018 * 5 2 1 8 8 C 1.53784 * 87.08195 * 140.06631 * 7 5 2 9 9 H 1.08994 * 113.61545 * 219.93693 * 8 7 5 10 10 N 1.46494 * 113.61621 * 89.11509 * 8 7 5 11 11 C 1.38613 * 120.00405 * 155.00271 * 10 8 7 12 12 N 1.29689 * 124.94398 * 0.02562 * 11 10 8 13 13 C 1.32121 * 116.86360 * 179.97438 * 12 11 10 14 14 C 1.33329 * 114.58093 * 0.02562 * 13 12 11 15 15 C 1.50695 * 125.95221 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47347 * 300.00132 * 15 14 13 17 17 Si 1.86298 * 109.47311 * 179.97438 * 15 14 13 18 18 S 1.70967 * 124.95261 * 180.34490 * 11 10 8 19 19 C 1.53778 * 113.69099 * 161.16146 * 5 2 1 20 20 H 1.09004 * 109.47102 * 299.99685 * 1 2 3 21 21 H 1.08995 * 109.47218 * 59.99251 * 1 2 3 22 22 H 1.08995 * 109.47670 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47087 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.47070 * 300.00317 * 3 2 1 25 25 H 1.09004 * 109.46659 * 60.00044 * 3 2 1 26 26 H 1.08997 * 109.47099 * 293.51551 * 4 2 1 27 27 H 1.09005 * 109.46464 * 53.51486 * 4 2 1 28 28 H 1.08993 * 109.47096 * 173.51438 * 4 2 1 29 29 H 1.08996 * 113.61167 * 25.51661 * 7 5 2 30 30 H 1.08998 * 113.69224 * 254.62342 * 7 5 2 31 31 H 0.97006 * 120.00101 * 335.00571 * 10 8 7 32 32 H 1.07996 * 122.70751 * 180.02562 * 13 12 11 33 33 H 1.09000 * 109.46687 * 60.00388 * 15 14 13 34 34 H 0.96693 * 114.00033 * 300.00021 * 16 15 14 35 35 H 1.48499 * 109.99914 * 58.68312 * 17 15 14 36 36 H 1.48497 * 110.00435 * 180.02562 * 17 15 14 37 37 H 1.09004 * 113.61846 * 105.45685 * 19 5 2 38 38 H 1.09000 * 113.61357 * 334.55288 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.8198 -0.1808 2.1697 7 6 1.6551 -2.2094 1.3016 8 6 3.0647 -2.4735 1.8568 9 1 3.5293 -3.3751 1.4577 10 7 3.1453 -2.3906 3.3171 11 6 4.1396 -3.0771 3.9965 12 7 5.0454 -3.8181 3.4377 13 6 5.9188 -4.4003 4.2401 14 6 5.7418 -4.1392 5.5355 15 6 6.5849 -4.6668 6.6676 16 8 6.5329 -6.0948 6.6749 17 14 5.9321 -4.0128 8.2853 18 16 4.3457 -3.0765 5.6937 19 6 3.5025 -1.1844 1.1415 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 3.1300 1.4423 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.7745 -1.7770 -1.1931 27 1 1.5848 -0.2788 -2.1354 28 1 3.1237 -0.6219 -1.3093 29 1 1.4827 -2.6506 0.3200 30 1 0.8579 -2.4308 2.0111 31 1 2.5029 -1.8553 3.8088 32 1 6.7121 -5.0363 3.8760 33 1 7.6167 -4.3414 6.5345 34 1 5.6431 -6.4554 6.7898 35 1 4.5159 -4.4222 8.4642 36 1 6.7554 -4.5254 9.4098 37 1 4.1967 -0.5770 1.7224 38 1 3.8351 -1.3454 0.1161 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17664194_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:00:51 Heat of formation + Delta-G solvation = 41.220662 kcal Electronic energy + Delta-G solvation = -18559.846711 eV Core-core repulsion = 15724.538791 eV Total energy + Delta-G solvation = -2835.307920 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38307 -40.45283 -38.09015 -36.89534 -34.21430 -31.16570 -28.45333 -28.19910 -26.89595 -26.20533 -25.95239 -24.36816 -21.85338 -20.63123 -19.65877 -19.02138 -18.06496 -17.19722 -16.59384 -16.43185 -16.24514 -15.96335 -15.51632 -15.40943 -15.06579 -14.96192 -14.31399 -13.95492 -13.77841 -13.55378 -13.24600 -12.92799 -12.83416 -12.64415 -12.46869 -12.40263 -12.07229 -11.97828 -11.87261 -11.38404 -11.28462 -10.98108 -10.90233 -10.75657 -10.29165 -10.21870 -8.73327 -5.04034 -0.07332 0.00915 0.65809 1.25011 1.54389 1.88019 1.95627 2.15745 3.37925 3.51995 3.57446 3.65292 3.80476 3.88647 3.92204 4.09176 4.30241 4.31374 4.56124 4.58549 4.68363 4.72223 4.75552 4.79971 4.83072 4.84088 4.98375 5.00588 5.05129 5.08209 5.15288 5.22180 5.24270 5.31264 5.43048 5.51634 5.60279 5.90823 6.15746 6.43471 7.00834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.149 4.149 5 C -0.090 4.090 6 H 0.091 0.909 7 C -0.135 4.135 8 C 0.133 3.867 9 H 0.085 0.915 10 N -0.667 5.667 11 C 0.317 3.683 12 N -0.578 5.578 13 C 0.104 3.896 14 C -0.306 4.306 15 C -0.022 4.022 16 O -0.542 6.542 17 Si 0.723 3.277 18 S 0.115 5.885 19 C -0.148 4.148 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.423 0.577 32 H 0.178 0.822 33 H 0.135 0.865 34 H 0.386 0.614 35 H -0.267 1.267 36 H -0.274 1.274 37 H 0.058 0.942 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 3.631 0.002 4.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.109 4.109 6 H 0.110 0.890 7 C -0.174 4.174 8 C 0.025 3.975 9 H 0.103 0.897 10 N -0.307 5.307 11 C -0.054 4.054 12 N -0.305 5.305 13 C -0.047 4.047 14 C -0.429 4.429 15 C -0.135 4.135 16 O -0.350 6.350 17 Si 0.626 3.374 18 S 0.364 5.636 19 C -0.187 4.187 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.262 0.738 32 H 0.195 0.805 33 H 0.152 0.848 34 H 0.235 0.765 35 H -0.192 1.192 36 H -0.200 1.200 37 H 0.077 0.923 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.083 3.901 0.781 5.033 hybrid contribution 0.091 -1.382 -0.607 1.512 sum -2.992 2.519 0.175 3.915 Atomic orbital electron populations 1.21842 0.94331 1.01958 1.01661 1.20401 0.95530 0.95131 0.94629 1.21848 1.00856 0.95495 1.01673 1.22041 1.01067 1.00634 0.96820 1.22580 0.95158 0.94908 0.98211 0.89034 1.23441 0.95333 0.96282 1.02307 1.21860 0.98349 0.98864 0.78461 0.89732 1.43771 1.29774 1.51138 1.05970 1.23944 0.93005 0.94671 0.93754 1.66479 1.08331 1.17048 1.38604 1.21448 0.97332 0.97752 0.88187 1.25632 1.05156 1.12366 0.99756 1.24272 1.03352 0.82987 1.02858 1.86585 1.35077 1.18757 1.94607 0.94391 0.78036 0.90439 0.74563 1.83824 1.27884 1.48820 1.03069 1.23594 0.96907 0.96758 1.01420 0.92634 0.92977 0.92303 0.92945 0.92885 0.92646 0.91914 0.92897 0.92399 0.87866 0.90379 0.73754 0.80505 0.84768 0.76466 1.19217 1.19954 0.92279 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.48 8.31 71.98 0.60 1.08 16 2 C -0.06 0.20 0.68 -52.18 -0.04 0.16 16 3 C -0.14 0.33 8.43 71.98 0.61 0.94 16 4 C -0.15 0.45 7.49 71.98 0.54 0.99 16 5 C -0.09 0.39 2.91 -10.27 -0.03 0.36 16 6 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 7 C -0.14 0.59 6.40 31.12 0.20 0.79 16 8 C 0.13 -0.12 4.44 45.52 0.20 0.09 16 9 H 0.08 0.29 7.66 -2.39 -0.02 0.27 16 10 N -0.67 0.63 5.42 -327.89 -1.78 -1.15 16 11 C 0.32 1.06 8.09 179.32 1.45 2.51 16 12 N -0.58 -4.22 9.83 -202.02 -1.99 -6.21 16 13 C 0.10 0.52 11.22 83.54 0.94 1.46 16 14 C -0.31 -0.62 5.74 24.57 0.14 -0.48 16 15 C -0.02 0.00 2.98 71.23 0.21 0.21 16 16 O -0.54 -1.50 12.87 -148.98 -1.92 -3.42 16 17 Si 0.72 -0.73 31.06 68.60 2.13 1.40 16 18 S 0.11 0.02 20.57 -56.49 -1.16 -1.14 16 19 C -0.15 0.26 7.09 31.12 0.22 0.48 16 20 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 21 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 22 H 0.06 -0.22 7.56 -2.39 -0.02 -0.24 16 23 H 0.05 -0.08 8.11 -2.39 -0.02 -0.10 16 24 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H 0.06 -0.23 6.05 -2.39 -0.01 -0.25 16 27 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 28 H 0.06 -0.14 6.46 -2.39 -0.02 -0.16 16 29 H 0.10 -0.48 6.09 -2.39 -0.01 -0.50 16 30 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.42 -2.27 8.83 -92.70 -0.82 -3.08 16 32 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.39 -0.91 8.70 -74.06 -0.64 -1.55 16 35 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 36 H -0.27 -1.38 7.11 99.48 0.71 -0.67 16 37 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 38 H 0.10 -0.16 5.70 -2.39 -0.01 -0.18 16 Total: 0.00 -9.77 314.07 -0.03 -9.80 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: -0.36 Total: -7.87 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.04 Total: 8.58 kcal Atomic # 7 Polarization: -3.60 SS G_CDS: -3.76 Total: -7.36 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -1.92 Total: -3.42 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.13 Total: 1.40 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.16 Total: -1.14 kcal Total: -9.77 -0.03 -9.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17664194_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.019 kcal (2) G-P(sol) polarization free energy of solvation -9.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds