Wall clock time and date at job start Mon Mar 8 2021 08:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47059 * 239.99593 * 2 1 3 5 5 C 1.37990 * 120.32542 * 120.02432 * 4 2 1 6 6 N 1.32003 * 120.89834 * 179.72101 * 5 4 2 7 7 C 1.32337 * 121.65133 * 0.52338 * 6 5 4 8 8 N 1.39138 * 119.72081 * 179.75121 * 7 6 5 9 9 C 1.46500 * 120.00284 * 359.72829 * 8 7 6 10 10 C 1.53001 * 109.47299 * 179.97438 * 9 8 7 11 11 F 1.39904 * 109.46640 * 60.00440 * 10 9 8 12 12 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47127 * 300.00449 * 13 12 10 15 15 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 16 16 C 1.52997 * 109.47127 * 179.97438 * 14 13 12 17 17 O 1.42899 * 109.47457 * 64.99652 * 16 14 13 18 18 C 1.52997 * 109.47164 * 59.99836 * 14 13 12 19 19 C 1.52996 * 109.47302 * 300.00141 * 10 9 8 20 20 C 1.39345 * 120.55788 * 359.47973 * 7 6 5 21 21 F 1.35102 * 120.46861 * 180.27631 * 20 7 6 22 22 C 1.38440 * 119.05794 * 0.25258 * 20 7 6 23 23 H 0.96706 * 113.99912 * 60.00241 * 1 2 3 24 24 H 1.09009 * 109.47098 * 119.99554 * 2 1 3 25 25 H 1.48503 * 109.99833 * 298.68104 * 3 2 1 26 26 H 1.48501 * 109.99896 * 59.99750 * 3 2 1 27 27 H 1.08000 * 119.54559 * 359.97438 * 5 4 2 28 28 H 0.97003 * 119.99732 * 179.72879 * 8 7 6 29 29 H 1.09001 * 109.46596 * 59.99722 * 9 8 7 30 30 H 1.09002 * 109.47129 * 300.00078 * 9 8 7 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 10 9 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 10 9 33 33 H 1.08998 * 109.47533 * 59.99948 * 13 12 10 34 34 H 1.08996 * 109.47853 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47346 * 184.99897 * 16 14 13 36 36 H 1.09002 * 109.47196 * 304.99671 * 16 14 13 37 37 H 0.96696 * 114.00139 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47045 * 180.02562 * 18 14 13 39 39 H 1.09001 * 109.47375 * 59.99966 * 18 14 13 40 40 H 1.08992 * 109.47554 * 299.99692 * 19 10 9 41 41 H 1.09004 * 109.47108 * 59.99942 * 19 10 9 42 42 H 1.08002 * 120.75817 * 180.02562 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7254 -0.0466 -2.1429 6 7 3.1761 -0.6595 -3.2217 7 6 2.8795 -1.9236 -3.4771 8 7 3.3722 -2.5286 -4.6292 9 6 4.2107 -1.7647 -5.5564 10 6 4.6163 -2.6575 -6.7309 11 9 3.4689 -3.1012 -7.3972 12 6 5.4914 -1.8595 -7.6995 13 6 5.8965 -2.7520 -8.8743 14 6 6.6815 -3.9571 -8.3523 15 1 7.5756 -3.6114 -7.8335 16 6 7.0860 -4.8500 -9.5270 17 8 7.9964 -4.1428 -10.3714 18 6 5.8063 -4.7551 -7.3837 19 6 5.4009 -3.8625 -6.2084 20 6 2.0825 -2.6556 -2.5993 21 9 1.7853 -3.9477 -2.8590 22 6 1.5999 -2.0402 -1.4569 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5138 0.8901 25 1 1.5879 2.4585 -1.2243 26 1 1.5615 2.4679 1.2085 27 1 2.9850 0.9874 -1.9700 28 1 3.1605 -3.4561 -4.8184 29 1 5.1047 -1.4193 -5.0373 30 1 3.6518 -0.9060 -5.9283 31 1 4.9321 -1.0011 -8.0717 32 1 6.3854 -1.5133 -7.1807 33 1 5.0025 -3.0978 -9.3931 34 1 6.5204 -2.1837 -9.5642 35 1 7.5671 -5.7521 -9.1490 36 1 6.1987 -5.1235 -10.0980 37 1 8.2961 -4.6496 -11.1385 38 1 6.3656 -5.6134 -7.0115 39 1 4.9121 -5.1008 -7.9024 40 1 6.2947 -3.5168 -5.6893 41 1 4.7770 -4.4309 -5.5185 42 1 0.9802 -2.5818 -0.7576 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17664724_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:05:56 Heat of formation + Delta-G solvation = -142.203046 kcal Electronic energy + Delta-G solvation = -26751.623453 eV Core-core repulsion = 22561.619295 eV Total energy + Delta-G solvation = -4190.004158 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.98920 -48.83173 -41.43436 -39.67566 -38.35205 -37.48551 -36.48029 -33.53893 -32.99342 -32.01139 -31.17439 -28.38788 -26.37542 -25.41835 -24.18585 -23.87774 -22.85947 -21.77177 -20.76424 -19.55194 -18.61318 -18.38256 -18.27572 -17.67172 -17.27738 -17.01585 -16.72388 -16.53852 -16.12547 -15.85151 -15.77410 -15.64993 -15.50741 -15.22362 -15.04240 -14.42397 -14.32636 -14.27633 -14.05956 -13.84956 -13.71761 -13.46193 -13.19258 -13.02923 -12.75430 -12.66210 -12.16697 -12.08522 -12.07036 -11.58877 -11.46647 -11.22233 -11.09806 -10.83000 -10.81904 -10.68883 -10.55084 -8.82917 -4.88816 -0.11238 0.07653 1.31897 1.63921 1.86703 2.00436 2.51082 2.98499 3.11050 3.25649 3.31217 3.40563 3.44177 3.54061 3.58563 3.66240 3.83556 3.86702 3.96300 4.05123 4.22550 4.29066 4.39034 4.41739 4.43007 4.52907 4.53917 4.54731 4.64313 4.70060 4.72465 4.81038 4.92017 4.95551 4.96318 5.01662 5.08907 5.23013 5.29331 5.31834 5.43869 5.84930 6.06966 6.49370 6.86664 6.88300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.767 3.233 4 C -0.202 4.202 5 C 0.149 3.851 6 N -0.525 5.525 7 C 0.382 3.618 8 N -0.714 5.714 9 C 0.119 3.881 10 C 0.112 3.888 11 F -0.218 7.218 12 C -0.134 4.134 13 C -0.108 4.108 14 C -0.088 4.088 15 H 0.079 0.921 16 C 0.076 3.924 17 O -0.593 6.593 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.037 4.037 21 F -0.142 7.142 22 C -0.039 4.039 23 H 0.386 0.614 24 H 0.130 0.870 25 H -0.278 1.278 26 H -0.301 1.301 27 H 0.185 0.815 28 H 0.415 0.585 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -0.130 -0.020 4.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.672 3.328 4 C -0.207 4.207 5 C -0.008 4.008 6 N -0.243 5.243 7 C 0.143 3.857 8 N -0.348 5.348 9 C -0.005 4.005 10 C 0.094 3.906 11 F -0.199 7.199 12 C -0.172 4.172 13 C -0.146 4.146 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.001 4.001 17 O -0.402 6.402 18 C -0.150 4.150 19 C -0.172 4.172 20 C -0.064 4.064 21 F -0.121 7.121 22 C -0.065 4.065 23 H 0.236 0.764 24 H 0.148 0.852 25 H -0.204 1.204 26 H -0.229 1.229 27 H 0.202 0.798 28 H 0.253 0.747 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.889 1.332 0.195 5.071 hybrid contribution -2.060 -1.842 -0.641 2.837 sum 2.829 -0.510 -0.446 2.909 Atomic orbital electron populations 1.86585 1.18554 1.80351 1.50213 1.25066 0.83315 1.11702 0.97675 0.94178 0.90095 0.71628 0.76890 1.20931 1.04510 0.94679 1.00605 1.22720 0.91039 0.99941 0.87137 1.67349 1.27046 1.07287 1.22593 1.18524 0.90399 0.89360 0.87371 1.44482 1.54860 1.14889 1.20606 1.21897 0.95950 0.93839 0.88808 1.21327 0.82633 0.95402 0.91243 1.92843 1.53210 1.91081 1.82718 1.22061 1.00450 0.98342 0.96307 1.21438 0.99603 0.96279 0.97257 1.21177 0.98686 0.95551 0.95197 0.90229 1.22266 0.92129 0.94183 0.91532 1.86416 1.65441 1.46430 1.41882 1.21479 0.99738 0.98289 0.95445 1.22103 1.01214 0.95420 0.98464 1.18147 1.07762 0.80856 0.99599 1.91468 1.92369 1.34117 1.94119 1.21432 0.95964 0.94763 0.94365 0.76419 0.85184 1.20404 1.22909 0.79846 0.74725 0.88487 0.91118 0.90288 0.88155 0.92647 0.91213 0.92576 0.93526 0.75489 0.89930 0.91930 0.88334 0.90618 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.31 12.78 -148.98 -1.90 -2.22 16 2 C -0.07 0.21 2.84 71.24 0.20 0.41 16 3 Si 0.77 -3.51 29.82 68.60 2.05 -1.46 16 4 C -0.20 0.24 5.40 -19.77 -0.11 0.13 16 5 C 0.15 -0.15 9.84 84.61 0.83 0.69 16 6 N -0.53 -1.54 9.57 -193.04 -1.85 -3.39 16 7 C 0.38 1.45 7.49 133.09 1.00 2.45 16 8 N -0.71 -1.01 5.34 -344.81 -1.84 -2.85 16 9 C 0.12 -0.13 4.90 86.38 0.42 0.30 16 10 C 0.11 -0.18 0.85 -10.79 -0.01 -0.19 16 11 F -0.22 -0.91 15.63 44.97 0.70 -0.21 16 12 C -0.13 0.35 5.00 30.59 0.15 0.50 16 13 C -0.11 0.02 4.98 30.60 0.15 0.17 16 14 C -0.09 0.15 2.43 -10.79 -0.03 0.12 16 15 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 16 C 0.08 -0.13 6.43 71.98 0.46 0.34 16 17 O -0.59 -0.35 13.19 -148.98 -1.97 -2.32 16 18 C -0.11 0.35 5.08 30.61 0.16 0.51 16 19 C -0.13 0.51 4.83 30.61 0.15 0.65 16 20 C -0.04 -0.16 7.35 22.58 0.17 0.01 16 21 F -0.14 -0.85 16.65 44.97 0.75 -0.10 16 22 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 23 H 0.39 -1.81 8.70 -74.05 -0.64 -2.46 16 24 H 0.13 -0.65 7.96 -2.38 -0.02 -0.67 16 25 H -0.28 0.26 7.11 99.48 0.71 0.96 16 26 H -0.30 -1.07 7.11 99.48 0.71 -0.37 16 27 H 0.19 -1.14 4.88 -2.91 -0.01 -1.16 16 28 H 0.41 0.37 6.73 -92.71 -0.62 -0.25 16 29 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.05 0.12 7.80 -2.39 -0.02 0.11 16 34 H 0.07 0.12 7.82 -2.39 -0.02 0.10 16 35 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.40 -2.90 9.12 -74.06 -0.68 -3.57 16 38 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.06 -0.06 7.80 -2.39 -0.02 -0.07 16 40 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.08 -0.27 6.86 -2.38 -0.02 -0.29 16 42 H 0.16 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -15.40 343.35 -1.13 -16.53 By element: Atomic # 1 Polarization: -9.41 SS G_CDS: -0.83 Total: -10.24 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 3.77 Total: 6.25 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -3.69 Total: -6.23 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -3.87 Total: -4.54 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 1.45 Total: -0.30 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.05 Total: -1.46 kcal Total: -15.40 -1.13 -16.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17664724_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.676 kcal (2) G-P(sol) polarization free energy of solvation -15.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds