Wall clock time and date at job start Mon Mar 8 2021 08:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.53003 * 109.46999 * 240.00458 * 2 1 3 5 5 Si 1.86303 * 109.47432 * 120.00342 * 2 1 3 6 6 C 1.86298 * 109.46915 * 299.99881 * 5 2 1 7 7 C 1.86295 * 109.46882 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.46849 * 60.00020 * 5 2 1 9 9 C 1.42903 * 113.99510 * 179.97438 * 8 5 2 10 10 C 1.53000 * 109.46726 * 179.97438 * 9 8 5 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32561 * 119.22481 * 359.72684 * 12 11 10 14 14 C 1.32253 * 120.73533 * 179.76257 * 13 12 11 15 15 C 1.38622 * 119.20478 * 0.50657 * 14 13 12 16 16 C 1.50702 * 120.71707 * 179.72888 * 15 14 13 17 17 O 1.42899 * 109.47219 * 120.01922 * 16 15 14 18 18 Si 1.86294 * 109.47195 * 0.02562 * 16 15 14 19 19 H 1.48502 * 109.47414 * 180.02562 * 18 16 15 20 20 H 1.48499 * 109.47172 * 299.99994 * 18 16 15 21 21 H 1.48502 * 109.47246 * 59.99689 * 18 16 15 22 22 C 1.38617 * 118.56890 * 359.74939 * 15 14 13 23 23 N 1.32259 * 119.20324 * 359.97438 * 22 15 14 24 24 H 1.09004 * 109.46700 * 299.99178 * 1 2 3 25 25 H 1.08992 * 109.47178 * 59.99941 * 1 2 3 26 26 H 1.09003 * 109.46789 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47263 * 300.00528 * 3 2 1 29 29 H 1.09007 * 109.46922 * 60.00095 * 3 2 1 30 30 H 1.09006 * 109.46841 * 299.99960 * 4 2 1 31 31 H 1.09003 * 109.47056 * 59.99651 * 4 2 1 32 32 H 1.08996 * 109.47397 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46848 * 180.02562 * 6 5 2 34 34 H 1.08994 * 109.47460 * 299.99963 * 6 5 2 35 35 H 1.08996 * 109.47371 * 60.00039 * 6 5 2 36 36 H 1.09007 * 109.47373 * 299.99693 * 7 5 2 37 37 H 1.08997 * 109.47767 * 60.00181 * 7 5 2 38 38 H 1.09003 * 109.46952 * 180.02562 * 7 5 2 39 39 H 1.09001 * 109.46938 * 60.00001 * 9 8 5 40 40 H 1.08992 * 109.47388 * 299.99992 * 9 8 5 41 41 H 1.09002 * 109.47398 * 300.00244 * 10 9 8 42 42 H 1.09001 * 109.47194 * 60.00425 * 10 9 8 43 43 H 1.08003 * 120.40232 * 180.22981 * 14 13 12 44 44 H 1.09005 * 109.46943 * 240.01844 * 16 15 14 45 45 H 0.96697 * 114.00323 * 179.97438 * 17 16 15 46 46 H 1.08007 * 120.39933 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1512 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8775 1.5213 8 8 1.6075 -2.4161 1.5209 9 6 2.0297 -3.1818 2.6512 10 6 1.4638 -4.5995 2.5468 11 16 1.9980 -5.5692 3.9787 12 6 1.2271 -7.1100 3.6096 13 7 0.5036 -7.2234 2.5046 14 6 -0.0842 -8.3672 2.1960 15 6 0.0550 -9.4510 3.0491 16 6 -0.6051 -10.7685 2.7338 17 8 0.3923 -11.7851 2.6166 18 14 -1.5389 -10.6268 1.1280 19 1 -2.1899 -11.9249 0.8177 20 1 -2.5754 -9.5704 1.2497 21 1 -0.5962 -10.2718 0.0369 22 6 0.8142 -9.2966 4.1985 23 7 1.3803 -8.1271 4.4458 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.8940 -0.5138 3.9322 34 1 1.8935 1.0275 3.0423 35 1 0.4402 -0.0001 3.0423 36 1 4.3778 -1.3911 0.6313 37 1 4.3771 0.1502 1.5216 38 1 4.3775 -1.3918 2.4110 39 1 1.6657 -2.7120 3.5649 40 1 3.1185 -3.2256 2.6741 41 1 0.3749 -4.5553 2.5241 42 1 1.8275 -5.0695 1.6331 43 1 -0.6695 -8.4546 1.2925 44 1 -1.2970 -11.0291 3.5348 45 1 0.0384 -12.6619 2.4143 46 1 0.9419 -10.1214 4.8841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18313560_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:42:40 Heat of formation + Delta-G solvation = -87.251306 kcal Electronic energy + Delta-G solvation = -23525.992024 eV Core-core repulsion = 20086.224228 eV Total energy + Delta-G solvation = -3439.767796 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.05277 -38.27306 -38.08704 -36.85921 -34.91797 -33.84323 -31.92541 -29.43173 -29.11223 -27.88782 -27.87701 -27.40251 -25.98025 -24.25244 -23.51351 -20.45436 -19.64455 -19.10452 -18.51280 -18.14832 -16.91149 -16.85081 -16.40648 -16.03165 -15.94329 -15.73941 -15.59983 -15.11183 -14.89872 -14.77808 -14.53429 -14.34017 -14.10191 -13.96927 -13.47657 -13.45846 -13.37093 -13.24352 -13.04999 -12.94849 -12.93438 -12.42315 -12.40234 -12.27426 -11.97143 -11.89938 -11.85501 -11.75270 -11.57797 -11.55076 -11.41424 -11.21084 -10.74960 -10.41029 -10.19227 -10.09987 -8.82462 -0.43802 -0.02563 0.03459 0.92460 0.93916 1.25028 1.33242 1.54920 1.70272 1.73191 2.01574 2.42082 2.46274 3.01865 3.13451 3.42030 3.52253 3.66145 3.76637 3.84586 3.95498 4.09906 4.09985 4.20501 4.28340 4.44668 4.60302 4.62269 4.64517 4.66126 4.70956 4.71491 4.79450 4.82073 4.83748 4.98141 5.08546 5.08581 5.08832 5.16154 5.30049 5.34048 5.40077 5.46843 5.52058 5.58011 5.73139 6.37890 6.73377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.620 6.620 9 C 0.100 3.900 10 C -0.120 4.120 11 S 0.023 5.977 12 C 0.298 3.702 13 N -0.517 5.517 14 C 0.164 3.836 15 C -0.192 4.192 16 C -0.069 4.069 17 O -0.544 6.544 18 Si 0.934 3.066 19 H -0.247 1.247 20 H -0.245 1.245 21 H -0.243 1.243 22 C 0.197 3.803 23 N -0.499 5.499 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.085 0.915 45 H 0.385 0.615 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -1.683 -0.246 2.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.579 6.579 9 C 0.023 3.977 10 C -0.269 4.269 11 S 0.258 5.742 12 C -0.077 4.077 13 N -0.234 5.234 14 C -0.005 4.005 15 C -0.200 4.200 16 C -0.181 4.181 17 O -0.351 6.351 18 Si 0.756 3.244 19 H -0.170 1.170 20 H -0.169 1.169 21 H -0.166 1.166 22 C 0.028 3.972 23 N -0.215 5.215 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.183 0.817 44 H 0.103 0.897 45 H 0.234 0.766 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.150 0.040 0.103 1.155 hybrid contribution -1.145 -1.403 -0.874 2.011 sum -2.295 -1.363 -0.771 2.778 Atomic orbital electron populations 1.21518 0.93790 1.02032 1.01818 1.25772 1.00703 1.02638 1.12624 1.21557 1.00801 0.94857 1.02176 1.21519 1.00637 1.00257 0.96754 0.76735 0.63131 0.53149 0.65136 1.27029 1.07072 1.09549 1.17704 1.27032 1.24897 1.04841 1.04597 1.85334 1.79381 1.46003 1.47224 1.21615 0.98483 0.89869 0.87746 1.23686 1.06592 0.96674 0.99971 1.85815 1.61142 0.97739 1.29465 1.24945 0.94593 0.98969 0.89212 1.68825 1.10556 1.26201 1.17812 1.23031 0.92788 0.87631 0.97015 1.20985 1.03871 0.96550 0.98592 1.24476 0.95469 0.87205 1.10949 1.86489 1.33893 1.20182 1.94518 0.85882 0.79269 0.82380 0.76912 1.17000 1.16875 1.16605 1.23193 0.86873 0.93743 0.93413 1.68588 1.22210 0.99844 1.30831 0.92667 0.92778 0.92150 0.92483 0.92474 0.92489 0.92144 0.92777 0.92665 0.91363 0.90613 0.90797 0.90795 0.90608 0.91361 0.91560 0.91550 0.87407 0.87417 0.81688 0.89719 0.76635 0.80420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 2 C -0.37 0.11 0.53 -90.62 -0.05 0.06 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 5 Si 1.29 -1.32 8.45 -169.99 -1.44 -2.76 16 6 C -0.51 0.38 8.50 101.05 0.86 1.24 16 7 C -0.51 0.35 8.50 101.05 0.86 1.21 16 8 O -0.62 -0.20 8.56 -35.23 -0.30 -0.51 16 9 C 0.10 -0.04 5.13 37.16 0.19 0.15 16 10 C -0.12 -0.07 5.18 37.16 0.19 0.12 16 11 S 0.02 0.04 22.25 -107.50 -2.39 -2.35 16 12 C 0.30 1.11 7.85 -90.83 -0.71 0.40 16 13 N -0.52 -1.69 9.14 -13.44 -0.12 -1.81 16 14 C 0.16 0.25 9.92 -17.23 -0.17 0.08 16 15 C -0.19 -0.13 5.43 -104.34 -0.57 -0.70 16 16 C -0.07 0.15 2.84 36.01 0.10 0.25 16 17 O -0.54 0.88 12.76 -35.23 -0.45 0.43 16 18 Si 0.93 -2.04 25.15 -169.99 -4.28 -6.31 16 19 H -0.25 0.51 7.11 56.52 0.40 0.91 16 20 H -0.25 0.40 7.11 56.52 0.40 0.80 16 21 H -0.24 0.15 7.11 56.52 0.40 0.55 16 22 C 0.20 0.31 10.92 -17.23 -0.19 0.12 16 23 N -0.50 -1.94 10.40 -13.44 -0.14 -2.08 16 24 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 25 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 26 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 27 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 28 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.06 -0.07 7.79 -51.92 -0.40 -0.48 16 30 H 0.06 0.02 7.97 -51.93 -0.41 -0.39 16 31 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 33 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 34 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 35 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 -0.03 7.79 -51.92 -0.40 -0.43 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 38 H 0.07 -0.07 7.48 -51.93 -0.39 -0.45 16 39 H 0.07 -0.11 7.21 -51.93 -0.37 -0.49 16 40 H 0.07 -0.11 7.21 -51.93 -0.37 -0.49 16 41 H 0.11 0.10 8.11 -51.91 -0.42 -0.32 16 42 H 0.11 0.11 8.11 -51.92 -0.42 -0.31 16 43 H 0.17 -0.11 5.04 -52.48 -0.26 -0.38 16 44 H 0.08 -0.36 7.96 -51.93 -0.41 -0.77 16 45 H 0.39 -2.31 8.74 45.56 0.40 -1.91 16 46 H 0.18 -0.17 8.06 -52.48 -0.42 -0.60 16 LS Contribution 384.47 15.07 5.79 5.79 Total: 0.00 -6.19 384.47 -9.13 -15.32 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -7.20 Total: -9.59 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 1.39 Total: 3.87 kcal Atomic # 7 Polarization: -3.63 SS G_CDS: -0.26 Total: -3.89 kcal Atomic # 8 Polarization: 0.68 SS G_CDS: -0.75 Total: -0.07 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: -5.71 Total: -9.07 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.39 Total: -2.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -6.19 -9.13 -15.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18313560_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.931 kcal (2) G-P(sol) polarization free energy of solvation -6.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds