Wall clock time and date at job start Mon Mar 8 2021 08:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 C 1.53003 * 109.46999 * 240.00458 * 2 1 3 5 5 Si 1.86303 * 109.47432 * 120.00342 * 2 1 3 6 6 C 1.86298 * 109.46915 * 299.99881 * 5 2 1 7 7 C 1.86295 * 109.46882 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.46849 * 60.00020 * 5 2 1 9 9 C 1.42903 * 113.99510 * 179.97438 * 8 5 2 10 10 C 1.53000 * 109.46726 * 179.97438 * 9 8 5 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.32561 * 119.22481 * 359.72684 * 12 11 10 14 14 C 1.32253 * 120.73533 * 179.76257 * 13 12 11 15 15 C 1.38622 * 119.20478 * 0.50657 * 14 13 12 16 16 C 1.50702 * 120.71707 * 179.72888 * 15 14 13 17 17 O 1.42899 * 109.47219 * 120.01922 * 16 15 14 18 18 Si 1.86294 * 109.47195 * 0.02562 * 16 15 14 19 19 H 1.48502 * 109.47414 * 180.02562 * 18 16 15 20 20 H 1.48499 * 109.47172 * 299.99994 * 18 16 15 21 21 H 1.48502 * 109.47246 * 59.99689 * 18 16 15 22 22 C 1.38617 * 118.56890 * 359.74939 * 15 14 13 23 23 N 1.32259 * 119.20324 * 359.97438 * 22 15 14 24 24 H 1.09004 * 109.46700 * 299.99178 * 1 2 3 25 25 H 1.08992 * 109.47178 * 59.99941 * 1 2 3 26 26 H 1.09003 * 109.46789 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47263 * 300.00528 * 3 2 1 29 29 H 1.09007 * 109.46922 * 60.00095 * 3 2 1 30 30 H 1.09006 * 109.46841 * 299.99960 * 4 2 1 31 31 H 1.09003 * 109.47056 * 59.99651 * 4 2 1 32 32 H 1.08996 * 109.47397 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.46848 * 180.02562 * 6 5 2 34 34 H 1.08994 * 109.47460 * 299.99963 * 6 5 2 35 35 H 1.08996 * 109.47371 * 60.00039 * 6 5 2 36 36 H 1.09007 * 109.47373 * 299.99693 * 7 5 2 37 37 H 1.08997 * 109.47767 * 60.00181 * 7 5 2 38 38 H 1.09003 * 109.46952 * 180.02562 * 7 5 2 39 39 H 1.09001 * 109.46938 * 60.00001 * 9 8 5 40 40 H 1.08992 * 109.47388 * 299.99992 * 9 8 5 41 41 H 1.09002 * 109.47398 * 300.00244 * 10 9 8 42 42 H 1.09001 * 109.47194 * 60.00425 * 10 9 8 43 43 H 1.08003 * 120.40232 * 180.22981 * 14 13 12 44 44 H 1.09005 * 109.46943 * 240.01844 * 16 15 14 45 45 H 0.96697 * 114.00323 * 179.97438 * 17 16 15 46 46 H 1.08007 * 120.39933 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1512 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8775 1.5213 8 8 1.6075 -2.4161 1.5209 9 6 2.0297 -3.1818 2.6512 10 6 1.4638 -4.5995 2.5468 11 16 1.9980 -5.5692 3.9787 12 6 1.2271 -7.1100 3.6096 13 7 0.5036 -7.2234 2.5046 14 6 -0.0842 -8.3672 2.1960 15 6 0.0550 -9.4510 3.0491 16 6 -0.6051 -10.7685 2.7338 17 8 0.3923 -11.7851 2.6166 18 14 -1.5389 -10.6268 1.1280 19 1 -2.1899 -11.9249 0.8177 20 1 -2.5754 -9.5704 1.2497 21 1 -0.5962 -10.2718 0.0369 22 6 0.8142 -9.2966 4.1985 23 7 1.3803 -8.1271 4.4458 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.8940 -0.5138 3.9322 34 1 1.8935 1.0275 3.0423 35 1 0.4402 -0.0001 3.0423 36 1 4.3778 -1.3911 0.6313 37 1 4.3771 0.1502 1.5216 38 1 4.3775 -1.3918 2.4110 39 1 1.6657 -2.7120 3.5649 40 1 3.1185 -3.2256 2.6741 41 1 0.3749 -4.5553 2.5241 42 1 1.8275 -5.0695 1.6331 43 1 -0.6695 -8.4546 1.2925 44 1 -1.2970 -11.0291 3.5348 45 1 0.0384 -12.6619 2.4143 46 1 0.9419 -10.1214 4.8841 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18313560_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:42:39 Heat of formation + Delta-G solvation = -81.680605 kcal Electronic energy + Delta-G solvation = -23525.750460 eV Core-core repulsion = 20086.224228 eV Total energy + Delta-G solvation = -3439.526232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15292 -38.24596 -37.93633 -36.83155 -35.05241 -33.86999 -31.94117 -29.35832 -29.06176 -27.87927 -27.83315 -27.37821 -26.07152 -24.23829 -23.52721 -20.43138 -19.72131 -19.15290 -18.38481 -18.13127 -16.90488 -16.83038 -16.38699 -16.08674 -15.94480 -15.70847 -15.57591 -15.08321 -14.86441 -14.77262 -14.48288 -14.34855 -14.11160 -13.92703 -13.42717 -13.38856 -13.30022 -13.16661 -13.00843 -12.95277 -12.89841 -12.39337 -12.39106 -12.18721 -12.05843 -11.87422 -11.80984 -11.73051 -11.64464 -11.52319 -11.38604 -11.24410 -10.74232 -10.34901 -10.16728 -10.06341 -8.93430 -0.54368 -0.13208 -0.06049 0.86629 1.09823 1.42494 1.49282 1.61629 1.76956 1.88951 2.10858 2.36290 2.48175 2.95690 3.26090 3.39663 3.44328 3.74701 3.77276 3.85805 4.02819 4.12178 4.12694 4.28254 4.46437 4.47613 4.58276 4.61910 4.67392 4.75049 4.78780 4.79627 4.82441 4.83008 4.83539 5.00513 5.05336 5.09523 5.09859 5.19292 5.32427 5.39365 5.41201 5.47218 5.60008 5.62830 5.64952 6.60116 6.80192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.381 4.381 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.314 2.686 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.634 6.634 9 C 0.093 3.907 10 C -0.112 4.112 11 S 0.022 5.978 12 C 0.277 3.723 13 N -0.531 5.531 14 C 0.149 3.851 15 C -0.188 4.188 16 C -0.064 4.064 17 O -0.561 6.561 18 Si 0.963 3.037 19 H -0.243 1.243 20 H -0.254 1.254 21 H -0.270 1.270 22 C 0.187 3.813 23 N -0.522 5.522 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.181 0.819 44 H 0.114 0.886 45 H 0.405 0.595 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -2.249 0.276 3.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.444 2.556 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.594 6.594 9 C 0.016 3.984 10 C -0.261 4.261 11 S 0.257 5.743 12 C -0.098 4.098 13 N -0.249 5.249 14 C -0.019 4.019 15 C -0.196 4.196 16 C -0.176 4.176 17 O -0.371 6.371 18 Si 0.787 3.213 19 H -0.166 1.166 20 H -0.178 1.178 21 H -0.194 1.194 22 C 0.019 3.981 23 N -0.239 5.239 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.198 0.802 44 H 0.131 0.869 45 H 0.256 0.744 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.353 -0.553 0.618 1.587 hybrid contribution -1.111 -1.284 -1.085 2.015 sum -2.464 -1.837 -0.467 3.109 Atomic orbital electron populations 1.21549 0.94260 1.01744 1.01913 1.25896 1.00395 1.03076 1.12979 1.21604 1.01327 0.94570 1.02280 1.21551 1.01062 0.99975 0.96897 0.76259 0.62643 0.52345 0.64325 1.27082 1.06948 1.09958 1.17979 1.27095 1.25100 1.05176 1.04658 1.85319 1.79744 1.46656 1.47637 1.21774 0.99315 0.89192 0.88122 1.23641 1.06216 0.97156 0.99120 1.85674 1.61145 0.97442 1.30083 1.25184 0.95341 0.99624 0.89641 1.68820 1.11005 1.27152 1.17906 1.23418 0.92963 0.87706 0.97812 1.21291 1.02969 0.97562 0.97765 1.24484 0.95219 0.85998 1.11861 1.86441 1.34599 1.21427 1.94657 0.85474 0.78074 0.81997 0.75791 1.16579 1.17775 1.19445 1.23640 0.86649 0.93664 0.94164 1.68592 1.23173 1.00697 1.31413 0.91996 0.93289 0.92627 0.91752 0.93093 0.91715 0.92642 0.93281 0.92049 0.90905 0.90169 0.91070 0.91142 0.90164 0.90927 0.90158 0.90265 0.87961 0.88162 0.80248 0.86888 0.74394 0.78245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 2 C -0.38 0.10 0.53 -10.79 -0.01 0.09 16 3 C -0.14 0.18 7.85 71.98 0.56 0.74 16 4 C -0.14 -0.13 7.85 71.98 0.56 0.44 16 5 Si 1.31 -2.80 8.45 68.60 0.58 -2.22 16 6 C -0.52 1.01 8.50 113.37 0.96 1.98 16 7 C -0.52 0.91 8.50 113.37 0.96 1.88 16 8 O -0.63 -0.61 8.56 -148.98 -1.28 -1.89 16 9 C 0.09 -0.07 5.13 71.98 0.37 0.30 16 10 C -0.11 -0.25 5.18 71.98 0.37 0.12 16 11 S 0.02 0.10 22.25 -56.49 -1.26 -1.16 16 12 C 0.28 2.40 7.85 180.42 1.42 3.82 16 13 N -0.53 -4.13 9.14 -196.44 -1.80 -5.92 16 14 C 0.15 0.56 9.92 84.72 0.84 1.40 16 15 C -0.19 -0.24 5.43 -19.68 -0.11 -0.34 16 16 C -0.06 0.34 2.84 71.24 0.20 0.54 16 17 O -0.56 2.51 12.76 -148.98 -1.90 0.61 16 18 Si 0.96 -4.67 25.15 68.60 1.73 -2.94 16 19 H -0.24 1.31 7.11 99.48 0.71 2.02 16 20 H -0.25 0.89 7.11 99.48 0.71 1.60 16 21 H -0.27 0.14 7.11 99.48 0.71 0.85 16 22 C 0.19 0.60 10.92 84.72 0.93 1.53 16 23 N -0.52 -4.50 10.40 -196.44 -2.04 -6.55 16 24 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 25 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.05 0.09 7.97 -2.39 -0.02 0.07 16 27 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 28 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.06 -0.19 7.79 -2.38 -0.02 -0.21 16 30 H 0.05 0.10 7.97 -2.38 -0.02 0.08 16 31 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 33 H 0.07 -0.20 7.48 -2.39 -0.02 -0.22 16 34 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 35 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 36 H 0.07 -0.06 7.79 -2.38 -0.02 -0.08 16 37 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 38 H 0.07 -0.19 7.48 -2.39 -0.02 -0.20 16 39 H 0.08 -0.30 7.21 -2.39 -0.02 -0.31 16 40 H 0.08 -0.27 7.21 -2.39 -0.02 -0.29 16 41 H 0.10 0.32 8.11 -2.39 -0.02 0.30 16 42 H 0.10 0.36 8.11 -2.39 -0.02 0.34 16 43 H 0.18 -0.11 5.04 -2.91 -0.01 -0.12 16 44 H 0.11 -1.21 7.96 -2.38 -0.02 -1.23 16 45 H 0.40 -5.48 8.74 -74.06 -0.65 -6.13 16 46 H 0.20 -0.52 8.06 -2.91 -0.02 -0.54 16 Total: 0.00 -14.71 384.47 2.73 -11.98 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 1.06 Total: -4.88 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 7.64 Total: 12.96 kcal Atomic # 7 Polarization: -8.63 SS G_CDS: -3.84 Total: -12.47 kcal Atomic # 8 Polarization: 1.90 SS G_CDS: -3.18 Total: -1.28 kcal Atomic # 14 Polarization: -7.47 SS G_CDS: 2.31 Total: -5.16 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.26 Total: -1.16 kcal Total: -14.71 2.73 -11.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18313560_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.699 kcal (2) G-P(sol) polarization free energy of solvation -14.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds