Wall clock time and date at job start Mon Mar 8 2021 07:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46878 * 240.00088 * 2 1 3 5 5 C 1.38608 * 120.71790 * 119.72427 * 4 2 1 6 6 N 1.32272 * 119.19347 * 179.72218 * 5 4 2 7 7 C 1.32491 * 120.74469 * 0.55821 * 6 5 4 8 8 N 1.38404 * 119.22247 * 179.73048 * 7 6 5 9 9 C 1.46496 * 119.99649 * 359.97438 * 8 7 6 10 10 H 1.09000 * 112.85099 * 336.18897 * 9 8 7 11 11 C 1.53782 * 113.61883 * 107.50403 * 9 8 7 12 12 C 1.53778 * 87.08363 * 139.97623 * 11 9 8 13 13 H 1.09006 * 113.68716 * 89.12631 * 12 11 9 14 14 C 1.50700 * 113.61042 * 220.01316 * 12 11 9 15 15 N 1.30174 * 126.79707 * 192.51997 * 14 12 11 16 16 O 1.20925 * 111.60201 * 179.97438 * 15 14 12 17 17 C 1.34045 * 111.56684 * 359.97438 * 16 15 14 18 18 C 1.35448 * 106.44509 * 359.75307 * 17 16 15 19 19 C 1.53774 * 87.08316 * 334.56584 * 12 11 9 20 20 N 1.32498 * 121.56363 * 359.71215 * 7 6 5 21 21 C 1.32277 * 120.73621 * 359.97438 * 20 7 6 22 22 H 0.96700 * 114.00234 * 59.99634 * 1 2 3 23 23 H 1.09002 * 109.47382 * 120.00154 * 2 1 3 24 24 H 1.48491 * 110.00200 * 298.68284 * 3 2 1 25 25 H 1.48502 * 109.99951 * 60.00423 * 3 2 1 26 26 H 1.08002 * 120.40125 * 359.97438 * 5 4 2 27 27 H 0.96998 * 120.00395 * 179.97438 * 8 7 6 28 28 H 1.09009 * 113.61031 * 254.52726 * 11 9 8 29 29 H 1.09000 * 113.61517 * 25.42047 * 11 9 8 30 30 H 1.07999 * 126.77798 * 180.02562 * 17 16 15 31 31 H 1.07998 * 128.00975 * 180.23150 * 18 17 16 32 32 H 1.08999 * 113.61859 * 270.88580 * 19 12 11 33 33 H 1.08997 * 113.69490 * 139.99135 * 19 12 11 34 34 H 1.08003 * 120.39880 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7243 -0.0495 -2.1555 6 7 3.1532 -0.7038 -3.2221 7 6 2.8237 -1.9723 -3.4164 8 7 3.2853 -2.6249 -4.5463 9 6 4.1274 -1.9128 -5.5106 10 1 3.9906 -0.8320 -5.4751 11 6 5.6014 -2.3504 -5.4825 12 6 5.5790 -2.2493 -7.0168 13 1 5.8405 -1.2608 -7.3945 14 6 6.3331 -3.3574 -7.7058 15 7 6.6728 -3.4059 -8.9615 16 8 7.2725 -4.4233 -9.2214 17 6 7.4123 -5.2029 -8.1400 18 6 6.8179 -4.5468 -7.1149 19 6 4.0634 -2.4954 -6.9325 20 7 2.0630 -2.6311 -2.5545 21 6 1.6061 -2.0372 -1.4645 22 1 -0.3933 0.4417 -0.7650 23 1 1.7924 -0.5139 0.8900 24 1 1.5879 2.4586 -1.2241 25 1 1.5615 2.4679 1.2086 26 1 2.9922 0.9859 -2.0050 27 1 3.0513 -3.5536 -4.6996 28 1 6.2629 -1.6262 -5.0068 29 1 5.7486 -3.3655 -5.1138 30 1 7.9057 -6.1625 -8.0940 31 1 6.7317 -4.8607 -6.0852 32 1 3.7900 -3.5502 -6.9602 33 1 3.4819 -1.8891 -7.6269 34 1 0.9860 -2.5793 -0.7658 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18339244_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:16 Heat of formation + Delta-G solvation = 127.529778 kcal Electronic energy + Delta-G solvation = -20163.762828 eV Core-core repulsion = 16875.445728 eV Total energy + Delta-G solvation = -3288.317100 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 275.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.89129 -42.12314 -40.39286 -38.14498 -36.01703 -34.74752 -34.29616 -32.60662 -32.02242 -27.46861 -26.83793 -26.12751 -25.66894 -24.00047 -23.25897 -22.02746 -20.83754 -19.36347 -19.01390 -18.51468 -18.43215 -18.08590 -16.80128 -16.57178 -16.37891 -16.10065 -15.70980 -15.59745 -15.46883 -14.55547 -14.42213 -14.05102 -13.88508 -13.74263 -13.41833 -13.15586 -12.73585 -12.52036 -12.28785 -11.93977 -11.88832 -11.74697 -11.69681 -11.24085 -10.87365 -10.67680 -10.56577 -10.05928 -9.10268 -4.90446 0.05032 0.14212 0.61624 1.27991 1.32900 1.61590 1.81526 1.99410 2.46859 2.77578 3.09899 3.18296 3.35319 3.43117 3.54862 3.66723 3.70048 3.73920 3.81178 3.90508 4.02355 4.24799 4.29541 4.48222 4.60204 4.66066 4.67150 4.72870 4.73414 4.78404 4.95815 4.98288 5.11687 5.16544 5.38773 5.78257 6.03129 6.40343 6.49498 7.26783 7.35062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.759 3.241 4 C -0.284 4.284 5 C 0.194 3.806 6 N -0.575 5.575 7 C 0.553 3.447 8 N -0.679 5.679 9 C 0.146 3.854 10 H 0.118 0.882 11 C -0.129 4.129 12 C -0.035 4.035 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.405 5.405 16 O 0.078 5.922 17 C -0.047 4.047 18 C -0.242 4.242 19 C -0.127 4.127 20 N -0.590 5.590 21 C 0.213 3.787 22 H 0.385 0.615 23 H 0.132 0.868 24 H -0.281 1.281 25 H -0.301 1.301 26 H 0.187 0.813 27 H 0.419 0.581 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.256 0.744 31 H 0.192 0.808 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -1.554 2.435 4.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.166 4.166 3 Si 0.664 3.336 4 C -0.292 4.292 5 C 0.027 3.973 6 N -0.298 5.298 7 C 0.196 3.804 8 N -0.315 5.315 9 C 0.040 3.960 10 H 0.136 0.864 11 C -0.168 4.168 12 C -0.055 4.055 13 H 0.128 0.872 14 C -0.138 4.138 15 N -0.112 5.112 16 O 0.015 5.985 17 C -0.128 4.128 18 C -0.263 4.263 19 C -0.166 4.166 20 N -0.312 5.312 21 C 0.045 3.955 22 H 0.234 0.766 23 H 0.150 0.850 24 H -0.207 1.207 25 H -0.229 1.229 26 H 0.204 0.796 27 H 0.257 0.743 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.272 0.728 31 H 0.209 0.791 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.022 -0.624 0.929 3.222 hybrid contribution -1.522 -0.527 0.820 1.807 sum 1.500 -1.150 1.749 2.575 Atomic orbital electron populations 1.86587 1.18532 1.80213 1.50156 1.24854 0.83184 1.11112 0.97490 0.94311 0.90200 0.72215 0.76837 1.21691 1.07610 0.97901 1.02040 1.23187 0.88142 0.99720 0.86266 1.67943 1.28849 1.08470 1.24541 1.19680 0.87059 0.86028 0.87643 1.44222 1.53522 1.14528 1.19202 1.22433 0.89181 0.98055 0.86320 0.86388 1.23529 0.96881 1.03578 0.92859 1.20697 0.94146 0.95292 0.95376 0.87215 1.23788 1.01291 0.98747 0.89937 1.73870 1.13332 1.04874 1.19109 1.84815 1.55094 1.22606 1.35984 1.26884 1.01243 1.00036 0.84595 1.23038 1.05059 0.94961 1.03239 1.23380 0.94406 1.02668 0.96167 1.68013 1.16790 1.40035 1.06394 1.23132 0.90321 0.91284 0.90738 0.76560 0.85049 1.20719 1.22851 0.79626 0.74286 0.89865 0.88421 0.72827 0.79063 0.88903 0.89986 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.24 12.79 -148.98 -1.91 -1.67 16 2 C -0.06 0.21 2.85 71.24 0.20 0.41 16 3 Si 0.76 -3.51 29.87 68.60 2.05 -1.47 16 4 C -0.28 0.42 5.40 -19.69 -0.11 0.31 16 5 C 0.19 -0.15 9.92 84.71 0.84 0.69 16 6 N -0.58 -1.85 9.13 -197.98 -1.81 -3.66 16 7 C 0.55 2.23 8.42 261.49 2.20 4.43 16 8 N -0.68 0.14 5.50 -327.92 -1.80 -1.66 16 9 C 0.15 -0.34 4.25 45.52 0.19 -0.15 16 10 H 0.12 -0.08 7.37 -2.39 -0.02 -0.10 16 11 C -0.13 0.48 7.27 31.12 0.23 0.71 16 12 C -0.04 0.04 4.29 -11.02 -0.05 0.00 16 13 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 14 C 0.02 0.05 6.70 43.58 0.29 0.34 16 15 N -0.41 -3.14 12.07 -49.56 -0.60 -3.74 16 16 O 0.08 0.35 11.20 71.58 0.80 1.15 16 17 C -0.05 0.17 12.30 67.17 0.83 0.99 16 18 C -0.24 0.59 10.27 22.40 0.23 0.82 16 19 C -0.13 0.34 7.38 31.12 0.23 0.57 16 20 N -0.59 -2.83 10.46 -197.99 -2.07 -4.90 16 21 C 0.21 0.25 10.92 84.71 0.93 1.18 16 22 H 0.39 -2.05 8.70 -74.06 -0.64 -2.69 16 23 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 24 H -0.28 0.21 7.11 99.48 0.71 0.91 16 25 H -0.30 -1.06 7.11 99.48 0.71 -0.35 16 26 H 0.19 -1.13 5.04 -2.91 -0.01 -1.14 16 27 H 0.42 -0.93 8.84 -92.71 -0.82 -1.75 16 28 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.10 -0.49 6.62 -2.39 -0.02 -0.51 16 30 H 0.26 -3.34 8.06 -2.91 -0.02 -3.36 16 31 H 0.19 -1.47 7.12 -2.91 -0.02 -1.49 16 32 H 0.09 -0.29 8.07 -2.39 -0.02 -0.31 16 33 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -18.68 295.47 0.42 -18.26 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.26 Total: -12.64 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.02 Total: 10.31 kcal Atomic # 7 Polarization: -7.67 SS G_CDS: -6.28 Total: -13.95 kcal Atomic # 8 Polarization: 0.58 SS G_CDS: -1.10 Total: -0.52 kcal Atomic # 14 Polarization: -3.51 SS G_CDS: 2.05 Total: -1.47 kcal Total: -18.68 0.42 -18.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.791 kcal (2) G-P(sol) polarization free energy of solvation -18.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds