Wall clock time and date at job start Mon Mar 8 2021 07:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86297 * 109.47575 * 2 1 4 4 C 1.50705 * 109.46938 * 239.99931 * 2 1 3 5 5 C 1.38839 * 120.33589 * 299.98070 * 4 2 1 6 6 C 1.38341 * 118.50351 * 179.77046 * 5 4 2 7 7 C 1.39087 * 119.09887 * 0.47441 * 6 5 4 8 8 N 1.39012 * 119.70293 * 179.79542 * 7 6 5 9 9 C 1.46494 * 119.99945 * 359.72310 * 8 7 6 10 10 H 1.08997 * 112.85325 * 336.19245 * 9 8 7 11 11 C 1.53782 * 113.69010 * 107.46699 * 9 8 7 12 12 C 1.53781 * 87.08170 * 139.98870 * 11 9 8 13 13 H 1.09000 * 113.69193 * 89.13006 * 12 11 9 14 14 C 1.50703 * 113.61438 * 220.02019 * 12 11 9 15 15 N 1.30174 * 126.79902 * 192.47634 * 14 12 11 16 16 O 1.20925 * 111.60250 * 179.97438 * 15 14 12 17 17 C 1.34034 * 111.56886 * 359.97438 * 16 15 14 18 18 C 1.35450 * 106.44531 * 359.97438 * 17 16 15 19 19 C 1.53776 * 87.08113 * 334.56607 * 12 11 9 20 20 N 1.32425 * 120.58931 * 359.51444 * 7 6 5 21 21 C 1.31939 * 121.62484 * 0.26173 * 20 7 6 22 22 H 0.96707 * 113.99938 * 300.00557 * 1 2 3 23 23 H 1.09001 * 109.47193 * 120.00348 * 2 1 3 24 24 H 1.48506 * 110.00115 * 178.68004 * 3 2 1 25 25 H 1.48498 * 110.00199 * 300.00028 * 3 2 1 26 26 H 1.08001 * 120.74680 * 0.02562 * 5 4 2 27 27 H 1.08005 * 120.44901 * 180.26675 * 6 5 4 28 28 H 0.97003 * 119.99562 * 179.72754 * 8 7 6 29 29 H 1.09009 * 113.61331 * 25.44366 * 11 9 8 30 30 H 1.08994 * 113.61832 * 254.53713 * 11 9 8 31 31 H 1.08000 * 126.77781 * 180.02562 * 17 16 15 32 32 H 1.08002 * 128.01009 * 180.02562 * 18 17 16 33 33 H 1.09000 * 113.61352 * 139.97832 * 19 12 11 34 34 H 1.09000 * 113.61667 * 270.79601 * 19 12 11 35 35 H 1.07997 * 119.57321 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6004 -2.0397 -1.4569 6 6 2.0781 -2.6533 -2.6011 7 6 2.8774 -1.9249 -3.4758 8 7 3.3677 -2.5302 -4.6272 9 6 3.0471 -3.9311 -4.9115 10 1 2.7952 -4.4980 -4.0153 11 6 2.0401 -4.1137 -6.0594 12 6 2.8929 -5.3106 -6.5122 13 1 2.5998 -6.2554 -6.0545 14 6 3.0497 -5.4087 -8.0079 15 7 3.5154 -6.4227 -8.6782 16 8 3.5193 -6.2059 -9.8679 17 6 3.0424 -4.9849 -10.1478 18 6 2.7182 -4.4185 -8.9610 19 6 4.0802 -4.6289 -5.8119 20 7 3.1708 -0.6582 -3.2245 21 6 2.7255 -0.0462 -2.1438 22 1 -0.3933 0.4418 0.7651 23 1 1.7923 -0.5139 0.8900 24 1 3.5347 1.7701 0.0321 25 1 1.5616 2.4679 -1.2085 26 1 0.9806 -2.5813 -0.7576 27 1 1.8365 -3.6849 -2.8105 28 1 3.9222 -2.0250 -5.2422 29 1 2.0343 -3.2877 -6.7707 30 1 1.0410 -4.3916 -5.7237 31 1 2.9367 -4.5408 -11.1266 32 1 2.3030 -3.4374 -8.7836 33 1 4.7281 -5.3228 -5.2762 34 1 4.6330 -3.9450 -6.4558 35 1 2.9849 0.9879 -1.9718 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18339244_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:19 Heat of formation + Delta-G solvation = 111.176361 kcal Electronic energy + Delta-G solvation = -20024.996633 eV Core-core repulsion = 16801.396306 eV Total energy + Delta-G solvation = -3223.600327 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.93059 -41.61730 -40.32908 -37.81930 -35.99088 -34.34643 -33.49255 -32.62912 -31.38873 -27.36405 -26.88807 -25.79427 -25.01061 -24.01643 -22.82446 -21.83942 -20.76428 -19.09505 -18.67874 -18.49713 -18.38965 -18.00234 -16.86637 -16.62970 -16.20936 -15.80509 -15.67802 -15.29859 -15.08264 -14.47910 -14.26485 -14.12501 -13.91194 -13.74718 -13.58267 -13.46663 -12.79697 -12.55519 -12.41141 -12.06591 -11.92190 -11.74192 -11.17022 -10.92222 -10.86548 -10.71034 -10.60658 -10.17962 -8.78740 -4.95248 0.05962 0.30149 0.57159 1.23605 1.33479 1.64847 1.96999 2.00123 2.42390 2.66917 3.09937 3.27812 3.36295 3.49173 3.51605 3.63028 3.74498 3.84597 3.92276 3.95817 4.04777 4.24786 4.29289 4.36751 4.46918 4.54067 4.63483 4.65917 4.68838 4.70985 4.89902 4.91032 4.93310 5.08643 5.15199 5.24636 5.44077 5.93922 6.42356 6.95445 7.00650 7.30376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.058 4.058 3 Si 0.767 3.233 4 C -0.202 4.202 5 C -0.009 4.009 6 C -0.235 4.235 7 C 0.393 3.607 8 N -0.706 5.706 9 C 0.136 3.864 10 H 0.128 0.872 11 C -0.135 4.135 12 C -0.036 4.036 13 H 0.115 0.885 14 C 0.021 3.979 15 N -0.404 5.404 16 O 0.078 5.922 17 C -0.046 4.046 18 C -0.244 4.244 19 C -0.127 4.127 20 N -0.569 5.569 21 C 0.124 3.876 22 H 0.403 0.597 23 H 0.096 0.904 24 H -0.290 1.290 25 H -0.300 1.300 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.406 0.594 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.255 0.745 32 H 0.189 0.811 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 1.054 2.835 4.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.169 4.169 3 Si 0.675 3.325 4 C -0.207 4.207 5 C -0.034 4.034 6 C -0.259 4.259 7 C 0.157 3.843 8 N -0.337 5.337 9 C 0.031 3.969 10 H 0.146 0.854 11 C -0.174 4.174 12 C -0.055 4.055 13 H 0.133 0.867 14 C -0.138 4.138 15 N -0.110 5.110 16 O 0.015 5.985 17 C -0.127 4.127 18 C -0.266 4.266 19 C -0.166 4.166 20 N -0.287 5.287 21 C -0.032 4.032 22 H 0.255 0.745 23 H 0.114 0.886 24 H -0.218 1.218 25 H -0.228 1.228 26 H 0.176 0.824 27 H 0.178 0.822 28 H 0.242 0.758 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.271 0.729 32 H 0.207 0.793 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.237 0.366 1.588 2.046 hybrid contribution -0.317 0.250 -0.301 0.504 sum -1.554 0.616 1.286 2.110 Atomic orbital electron populations 1.86432 1.17244 1.82314 1.51450 1.24479 0.85749 1.10066 0.96641 0.94502 0.77270 0.75988 0.84773 1.20371 1.04303 0.96610 0.99438 1.21493 0.93517 0.92921 0.95500 1.21792 1.04396 1.02862 0.96865 1.18692 0.89791 0.88111 0.87750 1.44574 1.55585 1.11892 1.21678 1.22591 0.96043 0.80406 0.97868 0.85449 1.23599 0.99154 0.96752 0.97932 1.20748 0.98918 1.00215 0.85651 0.86671 1.23817 1.00212 0.90667 0.99111 1.73865 1.21616 1.25081 0.90479 1.84812 1.62143 1.32482 1.19029 1.26870 0.97693 0.84788 1.03340 1.23031 1.08841 1.03423 0.91269 1.23349 0.96414 0.99239 0.97575 1.67053 1.28649 1.10569 1.22414 1.22098 0.93886 0.98287 0.88926 0.74534 0.88585 1.21786 1.22844 0.82434 0.82152 0.75764 0.88872 0.89302 0.72869 0.79345 0.89572 0.89466 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.57 12.75 -148.98 -1.90 -1.33 16 2 C -0.06 0.04 2.83 71.24 0.20 0.24 16 3 Si 0.77 -0.93 29.82 68.60 2.05 1.12 16 4 C -0.20 -1.12 5.43 -19.76 -0.11 -1.22 16 5 C -0.01 -0.03 9.77 22.44 0.22 0.19 16 6 C -0.23 -0.54 9.28 22.50 0.21 -0.33 16 7 C 0.39 2.28 7.65 133.04 1.02 3.30 16 8 N -0.71 -0.41 5.53 -322.07 -1.78 -2.19 16 9 C 0.14 -0.56 4.02 45.52 0.18 -0.38 16 10 H 0.13 -0.84 6.11 -2.39 -0.01 -0.86 16 11 C -0.13 0.61 7.27 31.12 0.23 0.84 16 12 C -0.04 0.07 4.29 -11.01 -0.05 0.03 16 13 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 14 C 0.02 0.06 6.70 43.58 0.29 0.35 16 15 N -0.40 -3.16 12.07 -49.56 -0.60 -3.76 16 16 O 0.08 0.38 11.20 71.69 0.80 1.18 16 17 C -0.05 0.13 12.30 67.18 0.83 0.96 16 18 C -0.24 0.39 10.28 22.40 0.23 0.62 16 19 C -0.13 0.41 7.38 31.12 0.23 0.64 16 20 N -0.57 -6.11 10.39 -193.27 -2.01 -8.12 16 21 C 0.12 1.18 9.84 84.64 0.83 2.01 16 22 H 0.40 -4.67 8.74 -74.05 -0.65 -5.32 16 23 H 0.10 -0.51 7.96 -2.39 -0.02 -0.53 16 24 H -0.29 -1.34 7.11 99.48 0.71 -0.64 16 25 H -0.30 -2.12 7.11 99.48 0.71 -1.42 16 26 H 0.16 -0.25 8.06 -2.91 -0.02 -0.28 16 27 H 0.16 -0.58 6.04 -2.91 -0.02 -0.60 16 28 H 0.41 0.17 8.85 -92.71 -0.82 -0.65 16 29 H 0.09 -0.40 6.62 -2.38 -0.02 -0.41 16 30 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.26 -3.12 8.06 -2.91 -0.02 -3.14 16 32 H 0.19 -1.18 7.12 -2.91 -0.02 -1.20 16 33 H 0.09 -0.30 8.14 -2.39 -0.02 -0.31 16 34 H 0.09 -0.20 8.07 -2.39 -0.02 -0.22 16 35 H 0.14 1.22 4.88 -2.91 -0.01 1.21 16 Total: 0.00 -21.63 297.95 0.59 -21.04 By element: Atomic # 1 Polarization: -14.91 SS G_CDS: -0.28 Total: -15.19 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.31 Total: 7.25 kcal Atomic # 7 Polarization: -9.68 SS G_CDS: -4.39 Total: -14.07 kcal Atomic # 8 Polarization: 0.95 SS G_CDS: -1.10 Total: -0.15 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.05 Total: 1.12 kcal Total: -21.63 0.59 -21.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.216 kcal (2) G-P(sol) polarization free energy of solvation -21.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds