Wall clock time and date at job start Mon Mar 8 2021 07:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46878 * 240.00088 * 2 1 3 5 5 C 1.33324 * 125.95452 * 299.71846 * 4 2 1 6 6 N 1.32117 * 114.58262 * 179.78886 * 5 4 2 7 7 C 1.29687 * 116.86164 * 0.51564 * 6 5 4 8 8 N 1.38617 * 124.94893 * 179.71800 * 7 6 5 9 9 C 1.46505 * 119.99741 * 0.02562 * 8 7 6 10 10 H 1.08997 * 112.85440 * 23.79764 * 9 8 7 11 11 C 1.53781 * 113.61331 * 155.00166 * 9 8 7 12 12 C 1.53778 * 87.08095 * 139.97867 * 11 9 8 13 13 H 1.08994 * 113.62221 * 89.19726 * 12 11 9 14 14 C 1.50706 * 113.61656 * 220.01975 * 12 11 9 15 15 N 1.30180 * 126.79789 * 264.69044 * 14 12 11 16 16 O 1.20921 * 111.59756 * 179.79281 * 15 14 12 17 17 C 1.34036 * 111.57033 * 0.47903 * 16 15 14 18 18 C 1.35446 * 106.44736 * 359.71266 * 17 16 15 19 19 C 1.53784 * 87.08510 * 334.56443 * 12 11 9 20 20 S 1.70968 * 110.10391 * 359.71849 * 7 6 5 21 21 H 0.96700 * 114.00234 * 59.99634 * 1 2 3 22 22 H 1.09002 * 109.47382 * 120.00154 * 2 1 3 23 23 H 1.48502 * 109.99951 * 60.00423 * 3 2 1 24 24 H 1.48507 * 109.99767 * 181.31988 * 3 2 1 25 25 H 1.08009 * 122.70800 * 359.95775 * 5 4 2 26 26 H 0.96994 * 119.99879 * 180.02562 * 8 7 6 27 27 H 1.08995 * 113.61132 * 254.52476 * 11 9 8 28 28 H 1.09001 * 113.61602 * 25.42948 * 11 9 8 29 29 H 1.08006 * 126.77647 * 179.68495 * 17 16 15 30 30 H 1.07997 * 128.01062 * 180.02562 * 18 17 16 31 31 H 1.08998 * 113.61452 * 270.88976 * 19 12 11 32 32 H 1.09000 * 113.61668 * 139.98012 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6878 -1.9803 -1.5555 6 7 2.2376 -2.3722 -2.6911 7 6 2.9426 -1.4941 -3.3344 8 7 3.5961 -1.7255 -4.5348 9 6 3.5174 -3.0437 -5.1694 10 1 2.6351 -3.6074 -4.8663 11 6 3.7330 -3.0083 -6.6916 12 6 4.5516 -4.2996 -6.5265 13 1 3.9532 -5.2079 -6.5958 14 6 5.7870 -4.3456 -7.3884 15 7 5.8999 -4.9012 -8.5603 16 8 7.0154 -4.7716 -9.0087 17 6 7.8118 -4.1028 -8.1631 18 6 7.0544 -3.7992 -7.0820 19 6 4.8250 -3.8484 -5.0820 20 16 2.9488 -0.0096 -2.4863 21 1 -0.3933 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8900 23 1 1.5615 2.4679 1.2086 24 1 3.5347 1.7703 -0.0321 25 1 1.0871 -2.6350 -0.9413 26 1 4.1054 -1.0148 -4.9546 27 1 2.8163 -3.1430 -7.2656 28 1 4.3239 -2.1569 -7.0293 29 1 8.8522 -3.8552 -8.3138 30 1 7.3500 -3.2634 -6.1921 31 1 5.7143 -3.2266 -4.9796 32 1 4.7897 -4.6613 -4.3566 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18339244_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:22 Heat of formation + Delta-G solvation = 115.240367 kcal Electronic energy + Delta-G solvation = -18629.516467 eV Core-core repulsion = 15495.244615 eV Total energy + Delta-G solvation = -3134.271852 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.91120 -41.04511 -40.13561 -37.87964 -35.90042 -34.20128 -32.63554 -31.21806 -27.51929 -26.96916 -26.24022 -24.60202 -23.98174 -22.47308 -21.13410 -20.68180 -19.51163 -18.86831 -18.46933 -18.12124 -17.08654 -16.94191 -16.44476 -16.18537 -15.79318 -15.69568 -15.40486 -14.90307 -14.50341 -14.07560 -13.93650 -13.82349 -13.57726 -12.99334 -12.73532 -12.54005 -12.35174 -12.07127 -12.00325 -11.80511 -11.17336 -10.96260 -10.78768 -10.60797 -10.25197 -10.16344 -8.77033 -5.14299 -0.04564 0.01789 0.52754 0.67946 1.20385 1.25295 1.57392 1.89834 2.02153 2.07974 2.30138 3.03228 3.19815 3.41942 3.43755 3.55892 3.68757 3.77618 3.88353 3.94033 4.15236 4.32694 4.46528 4.48279 4.50461 4.56238 4.62498 4.74027 4.80899 4.83985 4.95489 5.02045 5.23988 5.80829 6.01043 6.51977 6.98991 7.29480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.655 3.345 4 C -0.307 4.307 5 C 0.120 3.880 6 N -0.550 5.550 7 C 0.326 3.674 8 N -0.682 5.682 9 C 0.143 3.857 10 H 0.123 0.877 11 C -0.133 4.133 12 C -0.034 4.034 13 H 0.113 0.887 14 C 0.029 3.971 15 N -0.362 5.362 16 O 0.100 5.900 17 C -0.055 4.055 18 C -0.234 4.234 19 C -0.141 4.141 20 S 0.087 5.913 21 H 0.380 0.620 22 H 0.121 0.879 23 H -0.236 1.236 24 H -0.241 1.241 25 H 0.176 0.824 26 H 0.415 0.585 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.218 0.782 30 H 0.170 0.830 31 H 0.090 0.910 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 3.460 -1.413 4.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.555 3.445 4 C -0.429 4.429 5 C -0.031 4.031 6 N -0.275 5.275 7 C -0.044 4.044 8 N -0.320 5.320 9 C 0.035 3.965 10 H 0.141 0.859 11 C -0.173 4.173 12 C -0.053 4.053 13 H 0.131 0.869 14 C -0.130 4.130 15 N -0.065 5.065 16 O 0.033 5.967 17 C -0.136 4.136 18 C -0.255 4.255 19 C -0.181 4.181 20 S 0.336 5.664 21 H 0.227 0.773 22 H 0.139 0.861 23 H -0.159 1.159 24 H -0.165 1.165 25 H 0.193 0.807 26 H 0.252 0.748 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.234 0.766 30 H 0.188 0.812 31 H 0.109 0.891 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.582 3.370 -1.694 4.571 hybrid contribution 0.400 -0.463 1.068 1.231 sum 2.983 2.907 -0.627 4.212 Atomic orbital electron populations 1.86513 1.16891 1.81680 1.49140 1.24113 0.84835 1.08879 0.94629 0.94979 0.81970 0.78100 0.89404 1.25581 1.13308 0.99234 1.04823 1.21328 0.97067 0.93023 0.91711 1.66471 1.17084 1.33634 1.10312 1.23776 0.94862 0.93468 0.92333 1.44056 1.54254 1.14343 1.19334 1.22523 0.99204 0.83198 0.91550 0.85917 1.23434 1.00740 0.97247 0.95855 1.20670 0.91685 0.99591 0.93388 0.86867 1.23385 0.97080 0.99204 0.93372 1.73883 0.99673 1.20063 1.12880 1.84872 1.15245 1.56103 1.40457 1.26097 0.99498 0.97680 0.90364 1.22698 0.92973 1.07705 1.02149 1.23608 0.98898 1.00505 0.95103 1.83987 1.51537 1.13773 1.17126 0.77254 0.86149 1.15899 1.16527 0.80690 0.74781 0.89678 0.89181 0.76597 0.81212 0.89134 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.05 12.87 -35.23 -0.45 -0.50 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.55 31.05 -169.99 -5.28 -5.83 16 4 C -0.31 -0.15 5.74 -36.02 -0.21 -0.35 16 5 C 0.12 0.19 11.22 -19.15 -0.21 -0.02 16 6 N -0.55 -1.36 9.83 -15.20 -0.15 -1.51 16 7 C 0.33 0.23 8.09 -87.67 -0.71 -0.48 16 8 N -0.68 1.04 5.51 -54.98 -0.30 0.73 16 9 C 0.14 -0.23 4.36 -67.11 -0.29 -0.52 16 10 H 0.12 -0.03 7.66 -51.93 -0.40 -0.42 16 11 C -0.13 0.28 7.38 -25.92 -0.19 0.08 16 12 C -0.03 0.03 4.29 -90.96 -0.39 -0.36 16 13 H 0.11 -0.09 8.14 -51.93 -0.42 -0.51 16 14 C 0.03 0.02 6.70 -82.10 -0.55 -0.53 16 15 N -0.36 -1.14 12.07 33.42 0.40 -0.73 16 16 O 0.10 0.17 11.20 17.19 0.19 0.36 16 17 C -0.05 0.09 12.30 29.74 0.37 0.46 16 18 C -0.23 0.28 10.28 -39.38 -0.40 -0.13 16 19 C -0.14 0.26 7.27 -25.91 -0.19 0.07 16 20 S 0.09 -0.04 20.57 -107.50 -2.21 -2.25 16 21 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 22 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 23 H -0.24 -0.43 7.11 56.52 0.40 -0.03 16 24 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 25 H 0.18 0.11 8.06 -52.48 -0.42 -0.32 16 26 H 0.41 -1.50 8.85 -40.82 -0.36 -1.86 16 27 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 29 H 0.22 -1.25 8.06 -52.48 -0.42 -1.67 16 30 H 0.17 -0.59 7.12 -52.49 -0.37 -0.96 16 31 H 0.09 -0.23 6.62 -51.93 -0.34 -0.57 16 32 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 LS Contribution 293.46 15.07 4.42 4.42 Total: 0.00 -7.06 293.46 -9.28 -16.33 By element: Atomic # 1 Polarization: -6.15 SS G_CDS: -3.22 Total: -9.37 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.68 Total: -1.66 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -0.05 Total: -1.51 kcal Atomic # 8 Polarization: 0.12 SS G_CDS: -0.26 Total: -0.14 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.28 Total: -5.83 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.21 Total: -2.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -7.06 -9.28 -16.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.574 kcal (2) G-P(sol) polarization free energy of solvation -7.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds