Wall clock time and date at job start Mon Mar 8 2021 07:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46878 * 240.00088 * 2 1 3 5 5 C 1.33324 * 125.95452 * 299.71846 * 4 2 1 6 6 N 1.32117 * 114.58262 * 179.78886 * 5 4 2 7 7 C 1.29687 * 116.86164 * 0.51564 * 6 5 4 8 8 N 1.38617 * 124.94893 * 179.71800 * 7 6 5 9 9 C 1.46505 * 119.99741 * 0.02562 * 8 7 6 10 10 H 1.08997 * 112.85440 * 23.79764 * 9 8 7 11 11 C 1.53781 * 113.61331 * 155.00166 * 9 8 7 12 12 C 1.53778 * 87.08095 * 139.97867 * 11 9 8 13 13 H 1.08994 * 113.62221 * 89.19726 * 12 11 9 14 14 C 1.50706 * 113.61656 * 220.01975 * 12 11 9 15 15 N 1.30180 * 126.79789 * 264.69044 * 14 12 11 16 16 O 1.20921 * 111.59756 * 179.79281 * 15 14 12 17 17 C 1.34036 * 111.57033 * 0.47903 * 16 15 14 18 18 C 1.35446 * 106.44736 * 359.71266 * 17 16 15 19 19 C 1.53784 * 87.08510 * 334.56443 * 12 11 9 20 20 S 1.70968 * 110.10391 * 359.71849 * 7 6 5 21 21 H 0.96700 * 114.00234 * 59.99634 * 1 2 3 22 22 H 1.09002 * 109.47382 * 120.00154 * 2 1 3 23 23 H 1.48502 * 109.99951 * 60.00423 * 3 2 1 24 24 H 1.48507 * 109.99767 * 181.31988 * 3 2 1 25 25 H 1.08009 * 122.70800 * 359.95775 * 5 4 2 26 26 H 0.96994 * 119.99879 * 180.02562 * 8 7 6 27 27 H 1.08995 * 113.61132 * 254.52476 * 11 9 8 28 28 H 1.09001 * 113.61602 * 25.42948 * 11 9 8 29 29 H 1.08006 * 126.77647 * 179.68495 * 17 16 15 30 30 H 1.07997 * 128.01062 * 180.02562 * 18 17 16 31 31 H 1.08998 * 113.61452 * 270.88976 * 19 12 11 32 32 H 1.09000 * 113.61668 * 139.98012 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6878 -1.9803 -1.5555 6 7 2.2376 -2.3722 -2.6911 7 6 2.9426 -1.4941 -3.3344 8 7 3.5961 -1.7255 -4.5348 9 6 3.5174 -3.0437 -5.1694 10 1 2.6351 -3.6074 -4.8663 11 6 3.7330 -3.0083 -6.6916 12 6 4.5516 -4.2996 -6.5265 13 1 3.9532 -5.2079 -6.5958 14 6 5.7870 -4.3456 -7.3884 15 7 5.8999 -4.9012 -8.5603 16 8 7.0154 -4.7716 -9.0087 17 6 7.8118 -4.1028 -8.1631 18 6 7.0544 -3.7992 -7.0820 19 6 4.8250 -3.8484 -5.0820 20 16 2.9488 -0.0096 -2.4863 21 1 -0.3933 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8900 23 1 1.5615 2.4679 1.2086 24 1 3.5347 1.7703 -0.0321 25 1 1.0871 -2.6350 -0.9413 26 1 4.1054 -1.0148 -4.9546 27 1 2.8163 -3.1430 -7.2656 28 1 4.3239 -2.1569 -7.0293 29 1 8.8522 -3.8552 -8.3138 30 1 7.3500 -3.2634 -6.1921 31 1 5.7143 -3.2266 -4.9796 32 1 4.7897 -4.6613 -4.3566 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18339244_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:22 Heat of formation + Delta-G solvation = 116.926052 kcal Electronic energy + Delta-G solvation = -18629.443370 eV Core-core repulsion = 15495.244615 eV Total energy + Delta-G solvation = -3134.198755 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.89972 -41.01423 -40.10374 -37.85965 -35.85400 -34.14627 -32.58933 -31.22623 -27.48974 -26.84188 -26.23267 -24.59195 -23.93122 -22.41371 -21.05548 -20.66226 -19.47045 -18.80008 -18.48977 -18.11147 -17.03875 -16.87706 -16.43309 -16.13654 -15.76829 -15.61913 -15.38185 -14.92604 -14.39497 -14.09315 -13.88080 -13.71534 -13.42223 -12.96589 -12.69998 -12.50332 -12.44719 -12.03593 -11.92263 -11.73653 -11.12994 -10.88857 -10.79039 -10.57038 -10.26727 -10.15919 -8.73792 -5.10267 -0.05990 0.02647 0.61439 0.66917 1.27209 1.27959 1.58242 1.89157 1.97492 2.17136 2.47105 3.12249 3.30674 3.51385 3.53985 3.67599 3.71708 3.88466 3.94279 4.01463 4.28879 4.45870 4.49266 4.57254 4.65898 4.71699 4.72843 4.76118 4.90819 4.95659 5.02740 5.14377 5.30153 5.84900 6.16296 6.73143 7.01300 7.34952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.730 3.270 4 C -0.309 4.309 5 C 0.104 3.896 6 N -0.578 5.578 7 C 0.316 3.684 8 N -0.672 5.672 9 C 0.146 3.854 10 H 0.107 0.893 11 C -0.122 4.122 12 C -0.038 4.038 13 H 0.104 0.896 14 C 0.021 3.979 15 N -0.406 5.406 16 O 0.079 5.921 17 C -0.047 4.047 18 C -0.241 4.241 19 C -0.131 4.131 20 S 0.117 5.883 21 H 0.395 0.605 22 H 0.118 0.882 23 H -0.273 1.273 24 H -0.267 1.267 25 H 0.176 0.824 26 H 0.426 0.574 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.256 0.744 30 H 0.194 0.806 31 H 0.103 0.897 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 4.537 -1.518 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.634 3.366 4 C -0.432 4.432 5 C -0.047 4.047 6 N -0.304 5.304 7 C -0.055 4.055 8 N -0.311 5.311 9 C 0.038 3.962 10 H 0.125 0.875 11 C -0.162 4.162 12 C -0.057 4.057 13 H 0.123 0.877 14 C -0.138 4.138 15 N -0.112 5.112 16 O 0.015 5.985 17 C -0.128 4.128 18 C -0.262 4.262 19 C -0.171 4.171 20 S 0.367 5.633 21 H 0.245 0.755 22 H 0.135 0.865 23 H -0.199 1.199 24 H -0.193 1.193 25 H 0.193 0.807 26 H 0.266 0.734 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.272 0.728 30 H 0.211 0.789 31 H 0.121 0.879 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.501 4.447 -1.840 5.952 hybrid contribution 0.146 -0.784 1.128 1.382 sum 3.647 3.663 -0.712 5.218 Atomic orbital electron populations 1.86478 1.16986 1.82114 1.50279 1.24232 0.84890 1.09348 0.94290 0.94108 0.79190 0.75904 0.87439 1.25701 1.13214 0.99103 1.05210 1.21421 0.97681 0.93656 0.91927 1.66466 1.18168 1.34795 1.11000 1.23984 0.94770 0.93884 0.92828 1.44075 1.53776 1.14662 1.18628 1.22388 0.98812 0.83172 0.91814 0.87458 1.23366 1.00521 0.96963 0.95303 1.20691 0.91452 0.99808 0.93796 0.87747 1.23770 0.98307 0.98733 0.92964 1.73879 1.00793 1.22192 1.14369 1.84815 1.15336 1.56948 1.41383 1.26894 1.00605 0.95835 0.89422 1.23035 0.92058 1.07928 1.03185 1.23554 0.99136 1.00239 0.94157 1.83812 1.50839 1.12545 1.16131 0.75507 0.86500 1.19861 1.19264 0.80656 0.73449 0.89916 0.88164 0.72807 0.78909 0.87867 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.05 12.87 -148.98 -1.92 -1.96 16 2 C -0.01 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.36 31.05 68.60 2.13 0.77 16 4 C -0.31 -0.30 5.74 24.57 0.14 -0.16 16 5 C 0.10 0.40 11.22 83.54 0.94 1.34 16 6 N -0.58 -3.19 9.83 -202.02 -1.99 -5.17 16 7 C 0.32 0.39 8.09 179.32 1.45 1.84 16 8 N -0.67 2.39 5.51 -327.86 -1.81 0.58 16 9 C 0.15 -0.44 4.36 45.52 0.20 -0.24 16 10 H 0.11 0.07 7.66 -2.39 -0.02 0.05 16 11 C -0.12 0.50 7.38 31.12 0.23 0.73 16 12 C -0.04 0.05 4.29 -11.01 -0.05 0.00 16 13 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 14 C 0.02 0.04 6.70 43.58 0.29 0.33 16 15 N -0.41 -2.99 12.07 -49.56 -0.60 -3.58 16 16 O 0.08 0.31 11.20 71.67 0.80 1.11 16 17 C -0.05 0.20 12.30 67.17 0.83 1.03 16 18 C -0.24 0.81 10.28 22.40 0.23 1.04 16 19 C -0.13 0.49 7.27 31.13 0.23 0.72 16 20 S 0.12 -0.17 20.57 -56.49 -1.16 -1.33 16 21 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 22 H 0.12 0.00 7.96 -2.39 -0.02 -0.01 16 23 H -0.27 -1.17 7.11 99.48 0.71 -0.46 16 24 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 25 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 26 H 0.43 -3.59 8.85 -92.71 -0.82 -4.41 16 27 H 0.08 -0.28 8.14 -2.39 -0.02 -0.29 16 28 H 0.10 -0.60 8.07 -2.39 -0.02 -0.62 16 29 H 0.26 -3.53 8.06 -2.91 -0.02 -3.55 16 30 H 0.19 -1.74 7.12 -2.91 -0.02 -1.76 16 31 H 0.10 -0.65 6.62 -2.39 -0.02 -0.66 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -17.63 293.46 -0.09 -17.72 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -0.25 Total: -14.98 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.70 Total: 6.85 kcal Atomic # 7 Polarization: -3.78 SS G_CDS: -4.39 Total: -8.17 kcal Atomic # 8 Polarization: 0.26 SS G_CDS: -1.12 Total: -0.85 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: 2.13 Total: 0.77 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.16 Total: -1.33 kcal Total: -17.63 -0.09 -17.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.649 kcal (2) G-P(sol) polarization free energy of solvation -17.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds