Wall clock time and date at job start Mon Mar 8 2021 07:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 C 1.50697 * 122.71040 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47440 * 330.00273 * 4 3 2 6 6 Si 1.86301 * 109.46964 * 210.00195 * 4 3 2 7 7 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.87094 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.95101 * 180.02562 * 8 7 3 10 10 C 1.46501 * 119.99822 * 180.02562 * 9 8 7 11 11 H 1.09002 * 112.85229 * 336.19909 * 10 9 8 12 12 C 1.53788 * 113.61404 * 107.50645 * 10 9 8 13 13 C 1.53776 * 87.08049 * 139.97895 * 12 10 9 14 14 H 1.09005 * 113.69098 * 89.12838 * 13 12 10 15 15 C 1.50701 * 113.61631 * 220.01874 * 13 12 10 16 16 N 1.30175 * 126.80440 * 192.19044 * 15 13 12 17 17 O 1.20925 * 111.60431 * 179.80119 * 16 15 13 18 18 C 1.34037 * 111.56546 * 0.47547 * 17 16 15 19 19 C 1.35449 * 106.44794 * 359.71570 * 18 17 16 20 20 C 1.53778 * 87.08615 * 334.56868 * 13 12 10 21 21 S 1.70966 * 110.09929 * 359.73162 * 8 7 3 22 22 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 25 25 H 1.09003 * 109.46770 * 90.00319 * 4 3 2 26 26 H 0.96700 * 113.99862 * 300.00224 * 5 4 3 27 27 H 1.48506 * 109.99810 * 180.02562 * 6 4 3 28 28 H 1.48495 * 109.99915 * 301.32100 * 6 4 3 29 29 H 0.96993 * 120.00468 * 0.02562 * 9 8 7 30 30 H 1.08997 * 113.61672 * 254.53132 * 12 10 9 31 31 H 1.08998 * 113.61216 * 25.43383 * 12 10 9 32 32 H 1.08006 * 126.77536 * 179.69452 * 18 17 16 33 33 H 1.08000 * 128.00709 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.61378 * 270.88921 * 20 13 12 35 35 H 1.08997 * 113.69197 * 139.99111 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5020 -0.6746 6 14 2.9326 3.6147 -0.8787 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0005 10 6 5.5066 -2.3328 -0.0010 11 1 4.6805 -2.9173 0.4041 12 6 6.0362 -2.8604 -1.3449 13 6 6.9930 -3.7468 -0.5303 14 1 6.5747 -4.7193 -0.2705 15 6 8.3762 -3.8435 -1.1205 16 7 9.3126 -4.6812 -0.7800 17 8 10.3153 -4.5191 -1.4361 18 6 10.1723 -3.5173 -2.3151 19 6 8.9161 -3.0384 -2.1496 20 6 6.8747 -2.7050 0.5946 21 16 2.5413 -1.4260 0.0078 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6089 2.8217 1.0270 26 1 0.5240 2.2119 -1.5961 27 1 2.4035 5.0023 -0.8856 28 1 4.2561 3.5795 -0.2062 29 1 5.9756 -0.2621 -0.0001 30 1 5.2973 -3.4239 -1.9146 31 1 6.5443 -2.1029 -1.9416 32 1 10.9127 -3.1618 -3.0165 33 1 8.4375 -2.2292 -2.6812 34 1 7.6120 -1.9049 0.5281 35 1 6.8128 -3.1418 1.5913 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18339244_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:25 Heat of formation + Delta-G solvation = 111.412129 kcal Electronic energy + Delta-G solvation = -20628.747209 eV Core-core repulsion = 17338.771733 eV Total energy + Delta-G solvation = -3289.975476 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.94324 -41.16064 -40.56405 -37.80140 -35.95649 -34.30404 -32.70856 -32.40646 -29.32141 -27.11063 -26.92632 -25.55129 -24.33310 -24.07784 -22.41458 -21.35432 -20.23296 -19.29534 -18.69575 -18.50345 -17.89124 -17.47037 -16.89176 -16.54900 -16.39423 -15.78647 -15.56618 -15.32060 -14.61423 -14.25837 -14.15943 -14.05148 -13.76022 -13.74255 -13.62384 -13.31523 -12.92810 -12.70928 -12.56357 -12.29683 -12.12576 -11.90810 -11.80964 -11.06495 -10.99065 -10.64334 -10.55521 -10.29382 -9.98911 -8.62859 -4.84908 0.02935 0.18166 0.49870 0.79518 1.16325 1.39373 1.82247 1.90348 1.95089 2.25438 2.27174 2.97064 3.07526 3.28888 3.35611 3.43091 3.54440 3.63437 3.76797 4.09891 4.16055 4.22669 4.32094 4.35876 4.42173 4.50305 4.52250 4.55420 4.68786 4.70942 4.78302 4.88797 4.93270 5.00703 5.15156 5.32719 5.57953 6.23376 6.51058 6.96636 7.25791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.237 4.237 3 C 0.066 3.934 4 C -0.034 4.034 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.544 5.544 8 C 0.319 3.681 9 N -0.683 5.683 10 C 0.130 3.870 11 H 0.112 0.888 12 C -0.142 4.142 13 C -0.033 4.033 14 H 0.115 0.885 15 C 0.027 3.973 16 N -0.361 5.361 17 O 0.100 5.900 18 C -0.054 4.054 19 C -0.233 4.233 20 C -0.129 4.129 21 S 0.098 5.902 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.379 0.621 27 H -0.262 1.262 28 H -0.253 1.253 29 H 0.413 0.587 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.218 0.782 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.591 -1.302 -4.134 4.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.359 4.359 3 C -0.064 4.064 4 C -0.147 4.147 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.271 5.271 8 C -0.052 4.052 9 N -0.322 5.322 10 C 0.024 3.976 11 H 0.130 0.870 12 C -0.182 4.182 13 C -0.053 4.053 14 H 0.133 0.867 15 C -0.132 4.132 16 N -0.064 5.064 17 O 0.034 5.966 18 C -0.135 4.135 19 C -0.255 4.255 20 C -0.168 4.168 21 S 0.347 5.653 22 H 0.090 0.910 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.226 0.774 27 H -0.188 1.188 28 H -0.177 1.177 29 H 0.252 0.748 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.234 0.766 33 H 0.189 0.811 34 H 0.112 0.888 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.267 -2.246 -2.559 3.633 hybrid contribution -0.187 1.345 -0.021 1.358 sum 1.080 -0.902 -2.579 2.938 Atomic orbital electron populations 1.20220 0.86372 1.03158 1.02768 1.25149 1.01329 0.92657 1.16799 1.20132 0.86748 0.97156 1.02389 1.24515 0.92460 0.95542 1.02180 1.86506 1.28818 1.89630 1.29077 0.94109 0.77600 0.76484 0.90138 1.65969 1.17291 1.16674 1.27127 1.23324 0.91868 0.91495 0.98547 1.43937 1.01824 1.06455 1.80032 1.22584 0.97960 0.79688 0.97380 0.87016 1.23657 0.98429 0.98973 0.97096 1.20662 0.88300 0.99710 0.96605 0.86742 1.23327 0.97379 0.94879 0.97581 1.73878 0.94777 1.21999 1.15773 1.84875 1.31657 1.42759 1.37356 1.26109 0.99473 0.91196 0.96747 1.22708 0.95439 1.05033 1.02291 1.23393 0.95953 0.98491 0.98992 1.83952 0.96587 1.10661 1.74132 0.90989 0.89036 0.92272 0.86285 0.77353 1.18768 1.17679 0.74835 0.89669 0.88509 0.76552 0.81122 0.88761 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.02 8.95 36.01 0.32 0.34 16 2 C -0.24 -0.30 6.50 -36.02 -0.23 -0.54 16 3 C 0.07 0.14 5.92 -84.19 -0.50 -0.36 16 4 C -0.03 -0.04 2.82 36.00 0.10 0.07 16 5 O -0.54 0.05 9.90 -35.23 -0.35 -0.30 16 6 Si 0.72 0.64 32.08 -169.99 -5.45 -4.81 16 7 N -0.54 -1.58 8.94 -11.36 -0.10 -1.68 16 8 C 0.32 0.41 8.24 -87.68 -0.72 -0.31 16 9 N -0.68 0.69 5.51 -54.98 -0.30 0.39 16 10 C 0.13 -0.34 4.23 -67.11 -0.28 -0.63 16 11 H 0.11 -0.31 7.05 -51.93 -0.37 -0.68 16 12 C -0.14 0.44 7.27 -25.92 -0.19 0.25 16 13 C -0.03 0.06 4.29 -90.96 -0.39 -0.33 16 14 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 15 C 0.03 0.01 6.70 -82.10 -0.55 -0.54 16 16 N -0.36 -0.96 12.07 33.42 0.40 -0.56 16 17 O 0.10 0.14 11.20 17.18 0.19 0.33 16 18 C -0.05 0.10 12.30 29.74 0.37 0.47 16 19 C -0.23 0.38 10.28 -39.38 -0.40 -0.03 16 20 C -0.13 0.33 7.38 -25.92 -0.19 0.14 16 21 S 0.10 0.04 21.68 -107.50 -2.33 -2.29 16 22 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.09 0.04 6.62 -51.93 -0.34 -0.31 16 24 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.12 0.18 7.96 -51.93 -0.41 -0.23 16 26 H 0.38 -1.32 8.68 45.56 0.40 -0.93 16 27 H -0.26 -0.87 7.11 56.52 0.40 -0.47 16 28 H -0.25 -1.10 7.11 56.52 0.40 -0.70 16 29 H 0.41 -0.63 8.85 -40.82 -0.36 -0.99 16 30 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 31 H 0.10 -0.33 6.62 -51.93 -0.34 -0.67 16 32 H 0.22 -1.30 8.06 -52.48 -0.42 -1.72 16 33 H 0.17 -0.66 7.12 -52.49 -0.37 -1.03 16 34 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 35 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 LS Contribution 310.22 15.07 4.67 4.67 Total: 0.00 -7.22 310.22 -9.90 -17.12 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: -3.96 Total: -11.39 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.67 Total: -1.47 kcal Atomic # 7 Polarization: -1.86 SS G_CDS: 0.00 Total: -1.86 kcal Atomic # 8 Polarization: 0.18 SS G_CDS: -0.16 Total: 0.03 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: -5.45 Total: -4.81 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.33 Total: -2.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -7.22 -9.90 -17.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.535 kcal (2) G-P(sol) polarization free energy of solvation -7.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds