Wall clock time and date at job start Mon Mar 8 2021 07:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 C 1.50697 * 122.71040 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47440 * 330.00273 * 4 3 2 6 6 Si 1.86301 * 109.46964 * 210.00195 * 4 3 2 7 7 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.87094 * 359.97438 * 7 3 2 9 9 N 1.38611 * 124.95101 * 180.02562 * 8 7 3 10 10 C 1.46501 * 119.99822 * 180.02562 * 9 8 7 11 11 H 1.09002 * 112.85229 * 336.19909 * 10 9 8 12 12 C 1.53788 * 113.61404 * 107.50645 * 10 9 8 13 13 C 1.53776 * 87.08049 * 139.97895 * 12 10 9 14 14 H 1.09005 * 113.69098 * 89.12838 * 13 12 10 15 15 C 1.50701 * 113.61631 * 220.01874 * 13 12 10 16 16 N 1.30175 * 126.80440 * 192.19044 * 15 13 12 17 17 O 1.20925 * 111.60431 * 179.80119 * 16 15 13 18 18 C 1.34037 * 111.56546 * 0.47547 * 17 16 15 19 19 C 1.35449 * 106.44794 * 359.71570 * 18 17 16 20 20 C 1.53778 * 87.08615 * 334.56868 * 13 12 10 21 21 S 1.70966 * 110.09929 * 359.73162 * 8 7 3 22 22 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 25 25 H 1.09003 * 109.46770 * 90.00319 * 4 3 2 26 26 H 0.96700 * 113.99862 * 300.00224 * 5 4 3 27 27 H 1.48506 * 109.99810 * 180.02562 * 6 4 3 28 28 H 1.48495 * 109.99915 * 301.32100 * 6 4 3 29 29 H 0.96993 * 120.00468 * 0.02562 * 9 8 7 30 30 H 1.08997 * 113.61672 * 254.53132 * 12 10 9 31 31 H 1.08998 * 113.61216 * 25.43383 * 12 10 9 32 32 H 1.08006 * 126.77536 * 179.69452 * 18 17 16 33 33 H 1.08000 * 128.00709 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.61378 * 270.88921 * 20 13 12 35 35 H 1.08997 * 113.69197 * 139.99111 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5020 -0.6746 6 14 2.9326 3.6147 -0.8787 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0005 10 6 5.5066 -2.3328 -0.0010 11 1 4.6805 -2.9173 0.4041 12 6 6.0362 -2.8604 -1.3449 13 6 6.9930 -3.7468 -0.5303 14 1 6.5747 -4.7193 -0.2705 15 6 8.3762 -3.8435 -1.1205 16 7 9.3126 -4.6812 -0.7800 17 8 10.3153 -4.5191 -1.4361 18 6 10.1723 -3.5173 -2.3151 19 6 8.9161 -3.0384 -2.1496 20 6 6.8747 -2.7050 0.5946 21 16 2.5413 -1.4260 0.0078 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6089 2.8217 1.0270 26 1 0.5240 2.2119 -1.5961 27 1 2.4035 5.0023 -0.8856 28 1 4.2561 3.5795 -0.2062 29 1 5.9756 -0.2621 -0.0001 30 1 5.2973 -3.4239 -1.9146 31 1 6.5443 -2.1029 -1.9416 32 1 10.9127 -3.1618 -3.0165 33 1 8.4375 -2.2292 -2.6812 34 1 7.6120 -1.9049 0.5281 35 1 6.8128 -3.1418 1.5913 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18339244_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:25 Heat of formation + Delta-G solvation = 114.173029 kcal Electronic energy + Delta-G solvation = -20628.627487 eV Core-core repulsion = 17338.771733 eV Total energy + Delta-G solvation = -3289.855754 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.89564 -41.15672 -40.46300 -37.79882 -35.90192 -34.23106 -32.63162 -32.38948 -29.34079 -26.91709 -26.83099 -25.56372 -24.33670 -23.99671 -22.30091 -21.26702 -20.18086 -19.23904 -18.64530 -18.48898 -17.89728 -17.41713 -16.81393 -16.58118 -16.25110 -15.70784 -15.57756 -15.31241 -14.49511 -14.30844 -14.13121 -13.91987 -13.78811 -13.61732 -13.44378 -13.31286 -12.83092 -12.68873 -12.51878 -12.33962 -12.08012 -11.93298 -11.73217 -11.01511 -10.87636 -10.61646 -10.57194 -10.33327 -10.02923 -8.62531 -4.96209 -0.01373 0.16249 0.60945 0.75401 1.27265 1.30757 1.73497 1.84165 1.91549 2.12206 2.46277 3.11512 3.25215 3.39792 3.47759 3.54788 3.60887 3.81358 3.94324 4.17939 4.28013 4.33466 4.36340 4.49926 4.53128 4.64322 4.70505 4.71737 4.85393 4.88645 4.90045 4.94408 5.08240 5.14393 5.22285 5.37006 5.66670 6.29300 6.68580 6.94997 7.34109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.245 4.245 3 C 0.052 3.948 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.792 3.208 7 N -0.573 5.573 8 C 0.309 3.691 9 N -0.677 5.677 10 C 0.132 3.868 11 H 0.116 0.884 12 C -0.131 4.131 13 C -0.036 4.036 14 H 0.113 0.887 15 C 0.021 3.979 16 N -0.405 5.405 17 O 0.077 5.923 18 C -0.048 4.048 19 C -0.241 4.241 20 C -0.124 4.124 21 S 0.121 5.879 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.395 0.605 27 H -0.295 1.295 28 H -0.302 1.302 29 H 0.415 0.585 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.255 0.745 33 H 0.193 0.807 34 H 0.094 0.906 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 -1.509 -5.122 5.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.078 4.078 4 C -0.144 4.144 5 O -0.346 6.346 6 Si 0.699 3.301 7 N -0.301 5.301 8 C -0.062 4.062 9 N -0.316 5.316 10 C 0.027 3.973 11 H 0.134 0.866 12 C -0.170 4.170 13 C -0.056 4.056 14 H 0.131 0.869 15 C -0.138 4.138 16 N -0.112 5.112 17 O 0.014 5.986 18 C -0.128 4.128 19 C -0.262 4.262 20 C -0.164 4.164 21 S 0.370 5.630 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.245 0.755 27 H -0.223 1.223 28 H -0.229 1.229 29 H 0.254 0.746 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.271 0.729 33 H 0.211 0.789 34 H 0.112 0.888 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.800 -2.482 -3.579 4.428 hybrid contribution 0.016 1.415 0.291 1.445 sum 0.816 -1.067 -3.288 3.552 Atomic orbital electron populations 1.20237 0.85383 1.02929 1.03668 1.25407 1.02151 0.92930 1.16338 1.20233 0.86752 0.97652 1.03114 1.24432 0.92807 0.95314 1.01869 1.86477 1.28045 1.89693 1.30413 0.93232 0.73934 0.74100 0.88855 1.65965 1.17922 1.17715 1.28448 1.23556 0.92839 0.91494 0.98289 1.44061 1.01205 1.07097 1.79274 1.22639 0.97959 0.78841 0.97877 0.86650 1.23607 0.98036 0.98658 0.96729 1.20726 0.87711 0.99988 0.97166 0.86850 1.23774 0.97711 0.94537 0.97747 1.73872 0.95778 1.23955 1.17563 1.84817 1.31593 1.44010 1.38170 1.26885 1.00274 0.89724 0.95961 1.23049 0.95646 1.05481 1.02054 1.23353 0.95956 0.98246 0.98811 1.83808 0.95664 1.09733 1.73800 0.89480 0.89766 0.91941 0.87083 0.75518 1.22279 1.22929 0.74629 0.88992 0.87888 0.72934 0.78939 0.88781 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.09 8.95 71.24 0.64 0.72 16 2 C -0.25 -0.53 6.50 24.58 0.16 -0.37 16 3 C 0.05 0.22 5.92 41.41 0.25 0.47 16 4 C -0.03 -0.07 2.82 71.23 0.20 0.13 16 5 O -0.54 0.34 9.90 -148.98 -1.47 -1.14 16 6 Si 0.79 2.13 32.08 68.60 2.20 4.33 16 7 N -0.57 -3.56 8.94 -189.86 -1.70 -5.26 16 8 C 0.31 0.77 8.24 179.32 1.48 2.25 16 9 N -0.68 1.50 5.51 -327.87 -1.81 -0.31 16 10 C 0.13 -0.75 4.23 45.52 0.19 -0.56 16 11 H 0.12 -0.72 7.05 -2.39 -0.02 -0.73 16 12 C -0.13 0.92 7.27 31.12 0.23 1.14 16 13 C -0.04 0.14 4.29 -11.02 -0.05 0.09 16 14 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 15 C 0.02 0.02 6.70 43.58 0.29 0.31 16 16 N -0.40 -2.61 12.07 -49.55 -0.60 -3.21 16 17 O 0.08 0.27 11.20 71.66 0.80 1.07 16 18 C -0.05 0.21 12.30 67.17 0.83 1.04 16 19 C -0.24 0.93 10.28 22.40 0.23 1.16 16 20 C -0.12 0.62 7.38 31.12 0.23 0.85 16 21 S 0.12 0.02 21.68 -56.49 -1.22 -1.20 16 22 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.08 0.03 6.62 -2.39 -0.02 0.02 16 24 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 25 H 0.11 0.43 7.96 -2.39 -0.02 0.41 16 26 H 0.39 -3.15 8.68 -74.06 -0.64 -3.80 16 27 H -0.29 -2.32 7.11 99.48 0.71 -1.61 16 28 H -0.30 -3.28 7.11 99.48 0.71 -2.58 16 29 H 0.41 -1.26 8.85 -92.71 -0.82 -2.08 16 30 H 0.09 -0.73 8.14 -2.39 -0.02 -0.74 16 31 H 0.10 -0.83 6.62 -2.39 -0.02 -0.84 16 32 H 0.25 -3.49 8.06 -2.91 -0.02 -3.52 16 33 H 0.19 -1.79 7.12 -2.91 -0.02 -1.81 16 34 H 0.09 -0.45 8.07 -2.39 -0.02 -0.47 16 35 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -18.23 310.22 0.59 -17.64 By element: Atomic # 1 Polarization: -18.88 SS G_CDS: -0.28 Total: -19.16 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.67 Total: 7.23 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -4.10 Total: -8.78 kcal Atomic # 8 Polarization: 0.61 SS G_CDS: -0.67 Total: -0.06 kcal Atomic # 14 Polarization: 2.13 SS G_CDS: 2.20 Total: 4.33 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.22 Total: -1.20 kcal Total: -18.23 0.59 -17.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.813 kcal (2) G-P(sol) polarization free energy of solvation -18.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds