Wall clock time and date at job start Mon Mar 8 2021 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.46894 * 2 1 4 4 C 1.50697 * 109.47572 * 120.00230 * 2 1 3 5 5 C 1.37980 * 120.32902 * 244.97970 * 4 2 1 6 6 N 1.32007 * 120.90301 * 180.02562 * 5 4 2 7 7 C 1.32337 * 121.64439 * 0.02562 * 6 5 4 8 8 N 1.39148 * 119.71634 * 180.27452 * 7 6 5 9 9 C 1.46497 * 120.00060 * 359.72463 * 8 7 6 10 10 H 1.09000 * 112.85177 * 334.66879 * 9 8 7 11 11 C 1.53785 * 113.61599 * 105.86049 * 9 8 7 12 12 C 1.53950 * 87.01908 * 139.95332 * 11 9 8 13 13 H 1.09003 * 113.53881 * 89.18957 * 12 11 9 14 14 C 1.50705 * 113.66741 * 220.07195 * 12 11 9 15 15 N 1.30174 * 126.80301 * 192.24911 * 14 12 11 16 16 O 1.20921 * 111.60680 * 179.79175 * 15 14 12 17 17 C 1.34043 * 111.56324 * 0.48569 * 16 15 14 18 18 C 1.35452 * 106.44838 * 359.70846 * 17 16 15 19 19 C 1.53777 * 113.61892 * 203.47051 * 9 8 7 20 20 C 1.39345 * 120.56527 * 359.97438 * 7 6 5 21 21 F 1.35105 * 120.47109 * 180.02562 * 20 7 6 22 22 C 1.38438 * 119.05622 * 0.02562 * 20 7 6 23 23 H 0.96698 * 114.00180 * 299.99173 * 1 2 3 24 24 H 1.09001 * 109.47097 * 240.00764 * 2 1 3 25 25 H 1.48503 * 110.00217 * 178.68226 * 3 2 1 26 26 H 1.48501 * 110.00378 * 300.00627 * 3 2 1 27 27 H 1.08003 * 119.54993 * 0.04594 * 5 4 2 28 28 H 0.97000 * 119.99732 * 179.72537 * 8 7 6 29 29 H 1.08998 * 113.61919 * 254.53481 * 11 9 8 30 30 H 1.09005 * 113.61094 * 25.43145 * 11 9 8 31 31 H 1.07992 * 126.77625 * 179.72543 * 17 16 15 32 32 H 1.07998 * 128.00808 * 179.97438 * 18 17 16 33 33 H 1.09007 * 113.61234 * 334.56601 * 19 9 8 34 34 H 1.09000 * 113.61621 * 105.46869 * 19 9 8 35 35 H 1.08003 * 120.75719 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6386 -0.0203 2.1934 6 7 3.0844 -0.6314 3.2753 7 6 2.8741 -1.9218 3.4803 8 7 3.3573 -2.5240 4.6379 9 6 4.1004 -1.7314 5.6205 10 1 4.5845 -0.8589 5.1818 11 6 3.2958 -1.4149 6.8923 12 6 4.5925 -1.6742 7.6805 13 1 5.2108 -0.7853 7.8060 14 6 4.3773 -2.4258 8.9689 15 7 5.2395 -2.5878 9.9306 16 8 4.7755 -3.2353 10.8403 17 6 3.5123 -3.6055 10.5873 18 6 3.2009 -3.0996 9.3699 19 6 5.0324 -2.5703 6.5108 20 6 2.1675 -2.6811 2.5498 21 9 1.9535 -3.9983 2.7612 22 6 1.6881 -2.0668 1.4056 23 1 -0.3933 0.4416 0.7651 24 1 1.7923 -0.5137 -0.8901 25 1 3.5345 1.7704 0.0321 26 1 1.5613 2.4680 -1.2084 27 1 2.8297 1.0343 2.0605 28 1 3.2020 -3.4687 4.7942 29 1 2.9507 -0.3823 6.9450 30 1 2.5063 -2.1372 7.1005 31 1 2.8695 -4.1912 11.2277 32 1 2.2697 -3.1905 8.8304 33 1 4.7187 -3.6090 6.6146 34 1 6.0874 -2.4691 6.2560 35 1 1.1374 -2.6292 0.6661 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18339244_17656566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:28:28 Heat of formation + Delta-G solvation = 65.132953 kcal Electronic energy + Delta-G solvation = -22403.754748 eV Core-core repulsion = 18708.703854 eV Total energy + Delta-G solvation = -3695.050894 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95697 -45.89671 -41.49189 -40.28210 -37.93222 -35.93857 -34.30112 -33.19411 -32.59372 -31.23177 -27.35689 -26.82756 -26.09550 -24.89230 -23.89073 -23.00031 -21.97165 -20.82166 -19.24156 -18.95571 -18.50717 -18.38203 -18.24925 -17.53201 -17.00932 -16.73949 -16.31238 -16.03701 -15.81250 -15.55167 -15.38130 -14.89403 -14.35459 -14.30213 -14.08841 -13.86514 -13.66967 -13.52219 -13.40583 -12.73009 -12.53122 -12.50447 -12.15229 -11.91459 -11.68528 -11.22205 -10.87776 -10.70185 -10.67610 -10.57005 -10.40442 -8.76802 -4.96572 -0.08175 0.10052 0.61077 1.27588 1.32826 1.67853 1.96649 2.01658 2.46456 2.53542 3.01582 3.12858 3.27196 3.38676 3.51370 3.57181 3.67937 3.71350 3.86426 3.90884 3.99812 4.03602 4.29029 4.42722 4.46169 4.51448 4.62330 4.67244 4.71466 4.73706 4.77310 4.96108 4.99243 5.00027 5.12980 5.20784 5.46151 5.97298 6.18905 6.80698 6.94895 7.34625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.059 4.059 3 Si 0.774 3.226 4 C -0.207 4.207 5 C 0.150 3.850 6 N -0.524 5.524 7 C 0.383 3.617 8 N -0.702 5.702 9 C 0.143 3.857 10 H 0.118 0.882 11 C -0.129 4.129 12 C -0.036 4.036 13 H 0.109 0.891 14 C 0.021 3.979 15 N -0.405 5.405 16 O 0.078 5.922 17 C -0.047 4.047 18 C -0.242 4.242 19 C -0.129 4.129 20 C -0.038 4.038 21 F -0.141 7.141 22 C -0.041 4.041 23 H 0.396 0.604 24 H 0.110 0.890 25 H -0.281 1.281 26 H -0.298 1.298 27 H 0.185 0.815 28 H 0.416 0.584 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.256 0.744 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 1.012 1.751 4.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.169 4.169 3 Si 0.680 3.320 4 C -0.212 4.212 5 C -0.007 4.007 6 N -0.241 5.241 7 C 0.145 3.855 8 N -0.334 5.334 9 C 0.038 3.962 10 H 0.136 0.864 11 C -0.168 4.168 12 C -0.056 4.056 13 H 0.127 0.873 14 C -0.138 4.138 15 N -0.112 5.112 16 O 0.015 5.985 17 C -0.128 4.128 18 C -0.263 4.263 19 C -0.168 4.168 20 C -0.064 4.064 21 F -0.120 7.120 22 C -0.068 4.068 23 H 0.246 0.754 24 H 0.127 0.873 25 H -0.208 1.208 26 H -0.226 1.226 27 H 0.202 0.798 28 H 0.254 0.746 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.272 0.728 32 H 0.209 0.791 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.222 2.193 1.779 3.077 hybrid contribution -1.174 -2.065 -0.992 2.574 sum -2.396 0.128 0.787 2.525 Atomic orbital electron populations 1.86481 1.17212 1.82156 1.50548 1.24982 0.85239 1.10591 0.96107 0.93854 0.77994 0.74771 0.85387 1.20983 1.05577 0.94272 1.00358 1.22694 0.90856 1.00180 0.87005 1.67330 1.25441 1.07269 1.24042 1.18581 0.90511 0.89165 0.87237 1.44610 1.58599 1.12230 1.17966 1.22380 0.92330 0.95174 0.86300 0.86401 1.23553 0.95928 1.03627 0.93741 1.20747 1.00288 0.97976 0.86603 0.87268 1.23804 0.91340 1.01219 0.97404 1.73867 1.24298 1.13651 0.99399 1.84814 1.26368 1.51432 1.35881 1.26884 0.86050 1.00969 0.98868 1.23037 1.01422 1.03857 0.98006 1.23373 1.00708 0.99300 0.93433 1.18138 1.09693 0.79398 0.99161 1.91468 1.93828 1.31712 1.95017 1.21438 0.95399 0.94989 0.94947 0.75386 0.87255 1.20780 1.22613 0.79828 0.74563 0.89778 0.88581 0.72829 0.79086 0.89132 0.90066 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.21 12.84 -148.98 -1.91 -0.71 16 2 C -0.06 0.18 2.82 71.24 0.20 0.38 16 3 Si 0.77 -3.75 29.83 68.60 2.05 -1.70 16 4 C -0.21 0.36 5.36 -19.77 -0.11 0.25 16 5 C 0.15 -0.30 9.83 84.61 0.83 0.53 16 6 N -0.52 -0.77 9.15 -193.03 -1.77 -2.53 16 7 C 0.38 0.74 7.49 133.08 1.00 1.74 16 8 N -0.70 0.91 5.51 -321.79 -1.77 -0.86 16 9 C 0.14 -0.40 4.24 45.52 0.19 -0.21 16 10 H 0.12 -0.16 7.45 -2.39 -0.02 -0.18 16 11 C -0.13 0.51 7.29 31.18 0.23 0.74 16 12 C -0.04 0.04 4.29 -10.96 -0.05 0.00 16 13 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 14 C 0.02 0.05 6.70 43.58 0.29 0.35 16 15 N -0.41 -3.18 12.07 -49.55 -0.60 -3.78 16 16 O 0.08 0.35 11.20 71.61 0.80 1.16 16 17 C -0.05 0.16 12.30 67.18 0.83 0.99 16 18 C -0.24 0.57 10.28 22.40 0.23 0.80 16 19 C -0.13 0.34 7.38 31.12 0.23 0.57 16 20 C -0.04 -0.10 7.35 22.58 0.17 0.06 16 21 F -0.14 -0.59 16.65 44.97 0.75 0.15 16 22 C -0.04 -0.03 9.82 22.48 0.22 0.19 16 23 H 0.40 -4.05 8.70 -74.06 -0.64 -4.69 16 24 H 0.11 -0.23 7.96 -2.39 -0.02 -0.25 16 25 H -0.28 0.05 7.11 99.48 0.71 0.76 16 26 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 27 H 0.19 -1.37 4.91 -2.91 -0.01 -1.39 16 28 H 0.42 -1.28 8.18 -92.71 -0.76 -2.04 16 29 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.10 -0.50 6.63 -2.38 -0.02 -0.51 16 31 H 0.26 -3.32 8.06 -2.91 -0.02 -3.35 16 32 H 0.19 -1.46 7.12 -2.91 -0.02 -1.48 16 33 H 0.09 -0.26 8.06 -2.38 -0.02 -0.28 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.15 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: 0.00 -17.87 306.17 1.61 -16.26 By element: Atomic # 1 Polarization: -14.18 SS G_CDS: -0.20 Total: -14.38 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 4.26 Total: 6.40 kcal Atomic # 7 Polarization: -3.04 SS G_CDS: -4.14 Total: -7.18 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: -1.11 Total: 0.45 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.75 Total: 0.15 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.05 Total: -1.70 kcal Total: -17.87 1.61 -16.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18339244_17656566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.394 kcal (2) G-P(sol) polarization free energy of solvation -17.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds