Wall clock time and date at job start Mon Mar 8 2021 07:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86294 * 109.47272 * 2 1 4 4 C 1.50700 * 109.46737 * 240.00232 * 2 1 3 5 5 C 1.38607 * 120.72053 * 119.98062 * 4 2 1 6 6 N 1.32278 * 119.19728 * 180.02562 * 5 4 2 7 7 C 1.32490 * 120.74198 * 359.97438 * 6 5 4 8 8 N 1.38399 * 119.21980 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00262 * 175.06793 * 8 7 6 10 10 C 1.53005 * 112.84940 * 69.42038 * 9 8 7 11 11 O 1.42899 * 109.47084 * 54.96900 * 10 9 8 12 12 C 1.53783 * 113.61524 * 200.72248 * 9 8 7 13 13 C 1.53784 * 87.08122 * 89.12167 * 12 9 8 14 14 H 1.08999 * 113.69541 * 139.99008 * 13 12 9 15 15 O 1.42903 * 113.61007 * 270.88599 * 13 12 9 16 16 C 1.53779 * 87.08059 * 25.43172 * 13 12 9 17 17 N 1.32493 * 121.56512 * 359.97438 * 7 6 5 18 18 C 1.32282 * 120.74246 * 0.02562 * 17 7 6 19 19 H 0.96697 * 114.00331 * 60.00206 * 1 2 3 20 20 H 1.08993 * 109.47410 * 120.00475 * 2 1 3 21 21 H 1.48499 * 110.00011 * 298.68571 * 3 2 1 22 22 H 1.48503 * 110.00082 * 60.00142 * 3 2 1 23 23 H 1.07996 * 120.39968 * 0.02562 * 5 4 2 24 24 H 0.97004 * 120.00157 * 355.07021 * 8 7 6 25 25 H 1.08994 * 109.47159 * 174.96963 * 10 9 8 26 26 H 1.09007 * 109.46622 * 294.96992 * 10 9 8 27 27 H 0.96695 * 113.99832 * 180.02562 * 11 10 9 28 28 H 1.09009 * 113.61233 * 203.66715 * 12 9 8 29 29 H 1.08998 * 113.61870 * 334.56964 * 12 9 8 30 30 H 0.96701 * 113.99796 * 277.49513 * 15 13 12 31 31 H 1.09006 * 113.61649 * 220.02247 * 16 13 12 32 32 H 1.09003 * 113.69541 * 89.12948 * 16 13 12 33 33 H 1.07996 * 120.40113 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2305 5 6 2.7286 -0.0511 -2.1529 6 7 3.1523 -0.7035 -3.2227 7 6 2.8230 -1.9721 -3.4168 8 7 3.2834 -2.6242 -4.5474 9 6 3.0211 -4.0544 -4.7260 10 6 1.5451 -4.3594 -4.9893 11 8 1.0935 -3.5961 -6.1098 12 6 3.9793 -4.7375 -5.7160 13 6 4.9041 -5.0027 -4.5163 14 1 5.3739 -5.9861 -4.5344 15 8 5.8349 -3.9475 -4.2669 16 6 3.6470 -4.9368 -3.6331 17 7 2.0635 -2.6313 -2.5542 18 6 1.6067 -2.0375 -1.4640 19 1 -0.3934 0.4416 -0.7650 20 1 1.7923 -0.5139 0.8899 21 1 1.5878 2.4585 -1.2242 22 1 1.5615 2.4678 1.2085 23 1 3.0006 0.9828 -1.9999 24 1 3.7798 -2.1343 -5.2216 25 1 1.4259 -5.4218 -5.2017 26 1 0.9572 -4.0964 -4.1098 27 1 0.1639 -3.7394 -6.3343 28 1 3.5721 -5.6449 -6.1624 29 1 4.4045 -4.0562 -6.4529 30 1 6.6277 -3.9836 -4.8194 31 1 3.8039 -4.4162 -2.6883 32 1 3.1480 -5.8979 -3.5089 33 1 0.9883 -2.5802 -0.7644 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341544_12175864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:19 Heat of formation + Delta-G solvation = -31.456492 kcal Electronic energy + Delta-G solvation = -19479.483259 eV Core-core repulsion = 16315.694137 eV Total energy + Delta-G solvation = -3163.789122 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22384 -40.91221 -38.14543 -37.57389 -36.24500 -34.72961 -34.64271 -31.92252 -28.60573 -27.15685 -26.43451 -25.68870 -23.63819 -22.81073 -20.68056 -19.32101 -18.68862 -18.27003 -18.11100 -17.87962 -16.68790 -16.58157 -16.34754 -16.16729 -15.70059 -15.62438 -15.09462 -14.97378 -14.52091 -14.04030 -13.70527 -13.44812 -13.22067 -13.08230 -12.75629 -12.30366 -12.15914 -11.87437 -11.75322 -11.62147 -11.19172 -10.90434 -10.73032 -10.63347 -10.01133 -9.02351 -4.92240 0.08973 0.17370 1.31550 1.59431 1.80579 1.95676 2.81689 3.04148 3.14505 3.21065 3.42679 3.52194 3.59676 3.67976 3.72387 3.76611 3.88180 4.20250 4.25967 4.45569 4.49424 4.64696 4.66462 4.71343 4.79187 4.82940 4.92739 5.02430 5.09604 5.29825 5.82185 6.09939 6.42619 6.47766 6.80166 6.87509 7.31066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.052 4.052 3 Si 0.754 3.246 4 C -0.290 4.290 5 C 0.192 3.808 6 N -0.591 5.591 7 C 0.562 3.438 8 N -0.655 5.655 9 C 0.166 3.834 10 C 0.075 3.925 11 O -0.588 6.588 12 C -0.155 4.155 13 C 0.080 3.920 14 H 0.093 0.907 15 O -0.568 6.568 16 C -0.127 4.127 17 N -0.573 5.573 18 C 0.210 3.790 19 H 0.384 0.616 20 H 0.132 0.868 21 H -0.284 1.284 22 H -0.296 1.296 23 H 0.183 0.817 24 H 0.413 0.587 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.392 0.608 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.395 0.605 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -3.709 -0.973 4.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.163 4.163 3 Si 0.660 3.340 4 C -0.298 4.298 5 C 0.025 3.975 6 N -0.314 5.314 7 C 0.205 3.795 8 N -0.289 5.289 9 C 0.079 3.921 10 C -0.004 4.004 11 O -0.395 6.395 12 C -0.193 4.193 13 C 0.020 3.980 14 H 0.111 0.889 15 O -0.376 6.376 16 C -0.165 4.165 17 N -0.296 5.296 18 C 0.042 3.958 19 H 0.234 0.766 20 H 0.150 0.850 21 H -0.211 1.211 22 H -0.224 1.224 23 H 0.199 0.801 24 H 0.251 0.749 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.240 0.760 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.995 -3.513 -0.882 4.135 hybrid contribution -1.473 0.379 -0.433 1.582 sum 0.522 -3.134 -1.315 3.439 Atomic orbital electron populations 1.86572 1.18463 1.80206 1.50082 1.24791 0.83196 1.10921 0.97406 0.94275 0.90422 0.72502 0.76821 1.21657 1.07983 0.98110 1.02070 1.23103 0.88546 0.99534 0.86360 1.67900 1.29191 1.09222 1.25053 1.19552 0.86862 0.85476 0.87562 1.43616 1.58089 1.08327 1.18851 1.21315 0.93196 0.79597 0.98036 1.22568 0.94152 0.95158 0.88514 1.86433 1.32981 1.69676 1.50460 1.23948 0.96575 1.01852 0.96880 1.22785 0.89433 0.90906 0.94837 0.88894 1.86501 1.34510 1.51016 1.65584 1.23401 0.94937 1.00808 0.97397 1.68086 1.16117 1.39308 1.06054 1.23196 0.90459 0.91164 0.91006 0.76647 0.85026 1.21100 1.22355 0.80052 0.74904 0.90604 0.93267 0.75954 0.85884 0.90416 0.75479 0.92208 0.85727 0.79921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.66 12.79 -148.98 -1.91 -2.56 16 2 C -0.05 0.08 2.85 71.24 0.20 0.28 16 3 Si 0.75 -1.63 29.87 68.60 2.05 0.42 16 4 C -0.29 -0.47 5.40 -19.69 -0.11 -0.57 16 5 C 0.19 0.72 9.92 84.71 0.84 1.56 16 6 N -0.59 -5.43 10.46 -197.99 -2.07 -7.50 16 7 C 0.56 5.06 7.93 261.49 2.07 7.13 16 8 N -0.65 -4.07 4.65 -308.35 -1.43 -5.50 16 9 C 0.17 0.28 0.73 4.13 0.00 0.28 16 10 C 0.08 0.07 6.32 71.98 0.46 0.53 16 11 O -0.59 -1.78 13.53 -148.98 -2.02 -3.80 16 12 C -0.15 0.44 7.21 31.12 0.22 0.66 16 13 C 0.08 -0.17 5.28 31.12 0.16 0.00 16 14 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 15 O -0.57 -0.72 13.09 -148.98 -1.95 -2.67 16 16 C -0.13 -0.06 6.74 31.12 0.21 0.15 16 17 N -0.57 -4.01 7.26 -197.99 -1.44 -5.44 16 18 C 0.21 0.72 10.92 84.71 0.93 1.64 16 19 H 0.38 -1.32 8.70 -74.06 -0.64 -1.97 16 20 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 21 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 22 H -0.30 -1.51 7.11 99.48 0.71 -0.80 16 23 H 0.18 -0.27 5.04 -2.91 -0.01 -0.29 16 24 H 0.41 2.66 8.80 -92.71 -0.82 1.84 16 25 H 0.08 -0.30 8.08 -2.39 -0.02 -0.32 16 26 H 0.05 0.19 6.90 -2.38 -0.02 0.17 16 27 H 0.39 -1.74 9.12 -74.06 -0.68 -2.41 16 28 H 0.12 -0.80 8.06 -2.38 -0.02 -0.82 16 29 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 30 H 0.40 -2.70 9.12 -74.06 -0.68 -3.37 16 31 H 0.06 0.40 7.14 -2.38 -0.02 0.38 16 32 H 0.12 -0.53 8.10 -2.39 -0.02 -0.55 16 33 H 0.18 -0.15 8.06 -2.91 -0.02 -0.17 16 Total: 0.00 -19.55 280.49 -5.36 -24.91 By element: Atomic # 1 Polarization: -7.93 SS G_CDS: -1.58 Total: -9.51 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.99 Total: 11.66 kcal Atomic # 7 Polarization: -13.50 SS G_CDS: -4.94 Total: -18.44 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -5.87 Total: -9.03 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: 2.05 Total: 0.42 kcal Total: -19.55 -5.36 -24.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341544_12175864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.547 kcal (2) G-P(sol) polarization free energy of solvation -19.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds