Wall clock time and date at job start Mon Mar 8 2021 07:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.47157 * 2 1 4 4 C 1.50705 * 109.47010 * 240.00349 * 2 1 3 5 5 C 1.38838 * 120.33307 * 299.72271 * 4 2 1 6 6 C 1.38343 * 118.50117 * 179.75721 * 5 4 2 7 7 C 1.39090 * 119.10191 * 0.55868 * 6 5 4 8 8 N 1.39001 * 119.70757 * 179.69935 * 7 6 5 9 9 C 1.46492 * 120.00345 * 354.30109 * 8 7 6 10 10 C 1.53009 * 112.84788 * 294.76777 * 9 8 7 11 11 O 1.42901 * 109.46719 * 304.33528 * 10 9 8 12 12 C 1.53788 * 113.61646 * 65.95701 * 9 8 7 13 13 C 1.53787 * 87.07924 * 139.98649 * 12 9 8 14 14 H 1.08997 * 113.61281 * 89.20396 * 13 12 9 15 15 O 1.42905 * 113.60957 * 220.02365 * 13 12 9 16 16 C 1.53780 * 113.62036 * 163.56859 * 9 8 7 17 17 N 1.32431 * 120.58776 * 359.67910 * 7 6 5 18 18 C 1.31942 * 121.61943 * 0.02562 * 17 7 6 19 19 H 0.96708 * 113.99753 * 59.99163 * 1 2 3 20 20 H 1.08995 * 109.46841 * 120.00236 * 2 1 3 21 21 H 1.48502 * 109.99850 * 60.00251 * 3 2 1 22 22 H 1.48495 * 109.99914 * 181.31792 * 3 2 1 23 23 H 1.08000 * 120.74896 * 0.02574 * 5 4 2 24 24 H 1.08005 * 120.45043 * 180.25764 * 6 5 4 25 25 H 0.97009 * 119.99863 * 174.29723 * 8 7 6 26 26 H 1.08995 * 109.47047 * 64.34158 * 10 9 8 27 27 H 1.09006 * 109.47032 * 184.34187 * 10 9 8 28 28 H 0.96700 * 113.99554 * 179.97438 * 11 10 9 29 29 H 1.08992 * 113.61565 * 254.53740 * 12 9 8 30 30 H 1.08996 * 113.60958 * 25.35545 * 12 9 8 31 31 H 0.96695 * 113.99453 * 180.02562 * 15 13 12 32 32 H 1.09003 * 113.61107 * 334.56563 * 16 9 8 33 33 H 1.09001 * 113.61514 * 105.46875 * 16 9 8 34 34 H 1.08006 * 119.56988 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 1.6049 -2.0411 -1.4543 6 6 2.0822 -2.6545 -2.5988 7 6 2.8782 -1.9249 -3.4756 8 7 3.3697 -2.5306 -4.6261 9 6 3.1546 -3.9623 -4.8493 10 6 3.8738 -4.8385 -3.8217 11 8 5.2672 -4.5212 -3.8173 12 6 1.6776 -4.3389 -5.0537 13 6 2.1580 -5.3118 -6.1435 14 1 2.3970 -6.3062 -5.7665 15 8 1.3131 -5.3432 -7.2956 16 6 3.3888 -4.4010 -6.3045 17 7 3.1716 -0.6582 -3.2242 18 6 2.7255 -0.0461 -2.1438 19 1 -0.3933 0.4419 -0.7651 20 1 1.7923 -0.5139 0.8899 21 1 1.5615 2.4678 1.2085 22 1 3.5346 1.7702 -0.0321 23 1 0.9886 -2.5840 -0.7530 24 1 1.8441 -3.6874 -2.8062 25 1 3.8552 -2.0051 -5.2813 26 1 3.4561 -4.6549 -2.8318 27 1 3.7411 -5.8884 -4.0830 28 1 5.7865 -5.0396 -3.1874 29 1 1.2301 -4.8345 -4.1923 30 1 1.0672 -3.5205 -5.4354 31 1 1.6099 -5.9536 -7.9843 32 1 3.2473 -3.6001 -7.0301 33 1 4.3208 -4.9469 -6.4513 34 1 2.9849 0.9882 -1.9718 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341544_13915762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:22 Heat of formation + Delta-G solvation = -53.152632 kcal Electronic energy + Delta-G solvation = -19087.996315 eV Core-core repulsion = 15988.692288 eV Total energy + Delta-G solvation = -3099.304026 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88614 -40.69132 -37.96889 -37.55298 -36.41214 -34.65681 -33.33671 -31.25380 -28.30720 -27.18381 -26.36258 -24.54128 -23.86272 -22.42151 -20.14914 -19.06670 -18.60103 -18.31682 -18.20866 -17.51650 -16.63274 -16.38752 -16.29136 -16.01471 -15.66577 -15.22550 -14.89780 -14.71155 -14.30145 -14.05080 -13.76053 -13.58776 -13.36328 -13.22053 -13.06740 -12.37703 -12.11567 -11.90129 -11.64549 -11.30734 -10.98622 -10.84779 -10.73686 -10.42910 -10.37762 -8.71169 -4.99705 0.21493 0.39232 1.33704 1.62806 1.95662 2.02107 2.80717 2.88010 3.22496 3.35464 3.54392 3.60919 3.63696 3.68052 3.78025 3.96237 4.00992 4.09605 4.21700 4.28791 4.42192 4.47877 4.53047 4.62166 4.67770 4.75084 4.87045 4.94796 4.98421 5.10942 5.28288 5.53905 6.01046 6.49632 6.77278 6.78747 6.85968 7.13371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.052 4.052 3 Si 0.763 3.237 4 C -0.237 4.237 5 C -0.012 4.012 6 C -0.244 4.244 7 C 0.400 3.600 8 N -0.700 5.700 9 C 0.157 3.843 10 C 0.076 3.924 11 O -0.584 6.584 12 C -0.133 4.133 13 C 0.086 3.914 14 H 0.113 0.887 15 O -0.577 6.577 16 C -0.157 4.157 17 N -0.568 5.568 18 C 0.145 3.855 19 H 0.394 0.606 20 H 0.108 0.892 21 H -0.294 1.294 22 H -0.288 1.288 23 H 0.148 0.852 24 H 0.150 0.850 25 H 0.404 0.596 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.397 0.603 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -4.611 -1.731 4.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.163 4.163 3 Si 0.669 3.331 4 C -0.242 4.242 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.165 3.835 8 N -0.331 5.331 9 C 0.069 3.931 10 C -0.003 4.003 11 O -0.392 6.392 12 C -0.172 4.172 13 C 0.026 3.974 14 H 0.130 0.870 15 O -0.386 6.386 16 C -0.195 4.195 17 N -0.285 5.285 18 C -0.012 4.012 19 H 0.244 0.756 20 H 0.126 0.874 21 H -0.222 1.222 22 H -0.215 1.215 23 H 0.165 0.835 24 H 0.167 0.833 25 H 0.240 0.760 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.246 0.754 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.088 -3.240 -1.513 3.577 hybrid contribution 0.472 -1.367 0.641 1.582 sum 0.560 -4.607 -0.872 4.722 Atomic orbital electron populations 1.86449 1.17325 1.82088 1.50455 1.24811 0.85080 1.09973 0.96442 0.93832 0.77925 0.76150 0.85165 1.21038 1.05918 0.96804 1.00485 1.21404 0.93888 0.93356 0.95124 1.21776 1.04970 1.02706 0.97423 1.18592 0.89135 0.88480 0.87327 1.44387 1.60435 1.07972 1.20289 1.21553 0.95679 0.79714 0.96117 1.22493 0.81940 0.97924 0.97970 1.86455 1.19256 1.67476 1.66024 1.23580 0.94937 0.99752 0.98883 1.23287 0.89310 0.97996 0.86778 0.86983 1.86502 1.53253 1.68571 1.30231 1.23922 1.00520 1.00868 0.94221 1.67143 1.27885 1.10341 1.23179 1.22468 0.91699 0.99207 0.87867 0.75638 0.87426 1.22175 1.21549 0.83464 0.83278 0.76041 0.92508 0.89729 0.75362 0.88535 0.89689 0.75132 0.89276 0.89283 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.30 12.78 -148.98 -1.90 -2.20 16 2 C -0.05 -0.02 2.83 71.24 0.20 0.18 16 3 Si 0.76 -0.51 29.82 68.60 2.05 1.53 16 4 C -0.24 -0.54 5.39 -19.76 -0.11 -0.65 16 5 C -0.01 -0.02 9.77 22.44 0.22 0.20 16 6 C -0.24 -0.57 7.93 22.50 0.18 -0.39 16 7 C 0.40 2.34 7.42 133.04 0.99 3.33 16 8 N -0.70 -2.25 5.30 -302.55 -1.60 -3.85 16 9 C 0.16 -0.27 0.76 4.14 0.00 -0.26 16 10 C 0.08 -0.29 6.04 71.99 0.43 0.14 16 11 O -0.58 0.22 13.54 -148.98 -2.02 -1.80 16 12 C -0.13 0.34 5.77 31.12 0.18 0.52 16 13 C 0.09 -0.40 4.86 31.18 0.15 -0.25 16 14 H 0.11 -1.07 7.61 -2.39 -0.02 -1.09 16 15 O -0.58 0.85 13.67 -148.98 -2.04 -1.18 16 16 C -0.16 0.48 7.23 31.18 0.23 0.70 16 17 N -0.57 -4.75 10.39 -193.27 -2.01 -6.76 16 18 C 0.14 0.64 9.84 84.63 0.83 1.47 16 19 H 0.39 -2.69 8.70 -74.05 -0.64 -3.34 16 20 H 0.11 0.10 7.96 -2.39 -0.02 0.08 16 21 H -0.29 -1.81 7.11 99.48 0.71 -1.10 16 22 H -0.29 -1.33 7.11 99.48 0.71 -0.63 16 23 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 24 H 0.15 -0.26 4.05 -2.91 -0.01 -0.28 16 25 H 0.40 1.67 8.82 -92.70 -0.82 0.85 16 26 H 0.06 -0.22 5.96 -2.39 -0.01 -0.23 16 27 H 0.08 -0.76 7.32 -2.38 -0.02 -0.78 16 28 H 0.40 -3.20 9.12 -74.06 -0.68 -3.88 16 29 H 0.10 -0.55 7.05 -2.39 -0.02 -0.56 16 30 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.40 -3.87 9.12 -74.06 -0.68 -4.55 16 32 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.09 -0.34 8.10 -2.39 -0.02 -0.36 16 34 H 0.17 0.06 4.88 -2.91 -0.01 0.04 16 Total: 0.00 -19.40 280.60 -5.81 -25.21 By element: Atomic # 1 Polarization: -14.35 SS G_CDS: -1.59 Total: -15.94 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 3.31 Total: 5.00 kcal Atomic # 7 Polarization: -7.00 SS G_CDS: -3.61 Total: -10.61 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: -5.96 Total: -5.18 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.05 Total: 1.53 kcal Total: -19.40 -5.81 -25.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341544_13915762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.941 kcal (2) G-P(sol) polarization free energy of solvation -19.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds