Wall clock time and date at job start Mon Mar 8 2021 07:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86309 * 109.47280 * 2 1 4 4 C 1.50694 * 109.47508 * 239.99773 * 2 1 3 5 5 C 1.33330 * 125.95299 * 300.00379 * 4 2 1 6 6 N 1.32119 * 114.58281 * 179.97438 * 5 4 2 7 7 C 1.29686 * 116.86659 * 359.97438 * 6 5 4 8 8 N 1.38614 * 124.95391 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99682 * 5.18291 * 8 7 6 10 10 C 1.52998 * 112.84764 * 65.10459 * 9 8 7 11 11 O 1.42895 * 109.47296 * 56.45506 * 10 9 8 12 12 C 1.53771 * 113.61427 * 196.30083 * 9 8 7 13 13 C 1.53962 * 87.02076 * 89.23045 * 12 9 8 14 14 H 1.08998 * 113.66526 * 139.93291 * 13 12 9 15 15 O 1.42898 * 113.60830 * 270.80115 * 13 12 9 16 16 C 1.53777 * 113.61327 * 293.90978 * 9 8 7 17 17 S 1.70968 * 110.09904 * 0.24641 * 7 6 5 18 18 H 0.96706 * 114.00114 * 60.00488 * 1 2 3 19 19 H 1.09005 * 109.47181 * 119.99866 * 2 1 3 20 20 H 1.48495 * 109.99917 * 59.99784 * 3 2 1 21 21 H 1.48502 * 109.99879 * 181.31904 * 3 2 1 22 22 H 1.08005 * 122.70988 * 0.02562 * 5 4 2 23 23 H 0.96997 * 119.99920 * 185.18214 * 8 7 6 24 24 H 1.09000 * 109.46866 * 176.45235 * 10 9 8 25 25 H 1.08997 * 109.47600 * 296.44966 * 10 9 8 26 26 H 0.96705 * 114.00242 * 180.02562 * 11 10 9 27 27 H 1.09004 * 113.61800 * 203.74478 * 12 9 8 28 28 H 1.08999 * 113.61854 * 334.65216 * 12 9 8 29 29 H 0.96702 * 114.00329 * 277.52804 * 15 13 12 30 30 H 1.09005 * 113.61601 * 25.34697 * 16 9 8 31 31 H 1.09001 * 113.61868 * 156.24867 * 16 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6835 -1.9789 -1.5579 6 7 2.2377 -2.3723 -2.6909 7 6 2.9416 -1.4939 -3.3350 8 7 3.5948 -1.7252 -4.5355 9 6 3.4259 -3.0060 -5.2264 10 6 1.9930 -3.2349 -5.7114 11 8 1.5981 -2.1533 -6.5576 12 6 4.4906 -3.2697 -6.3041 13 6 5.3365 -3.9213 -5.1948 14 1 5.8580 -4.8232 -5.5151 15 8 6.1885 -3.0012 -4.5097 16 6 4.0152 -4.2018 -4.4598 17 16 2.9526 -0.0112 -2.4839 18 1 -0.3934 0.4417 -0.7651 19 1 1.7923 -0.5138 0.8900 20 1 1.5614 2.4679 1.2084 21 1 3.5346 1.7703 -0.0321 22 1 1.0778 -2.6318 -0.9469 23 1 4.1638 -1.0391 -4.9181 24 1 1.9435 -4.1697 -6.2698 25 1 1.3230 -3.2883 -4.8533 26 1 0.6980 -2.2319 -6.9023 27 1 4.1678 -3.9696 -7.0749 28 1 4.9316 -2.3611 -6.7138 29 1 7.0211 -2.8207 -4.9671 30 1 4.0728 -4.0445 -3.3827 31 1 3.5620 -5.1569 -4.7253 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341544_15704118.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:25 Heat of formation + Delta-G solvation = -42.825586 kcal Electronic energy + Delta-G solvation = -17888.362357 eV Core-core repulsion = 14878.658392 eV Total energy + Delta-G solvation = -3009.703966 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 259.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48305 -40.22540 -37.88205 -37.52563 -36.15843 -34.38408 -31.16828 -28.64428 -27.16263 -26.39357 -24.75089 -23.19440 -21.56353 -19.88847 -19.72070 -18.28271 -18.15448 -17.97148 -17.05273 -16.59737 -16.36657 -16.27553 -15.81875 -15.44466 -15.18753 -14.90638 -14.85362 -14.09233 -13.68829 -13.46722 -13.18439 -12.83665 -12.74019 -12.46811 -12.18156 -12.00049 -11.55049 -11.22881 -10.97363 -10.80205 -10.57061 -10.24031 -10.13174 -8.66981 -5.12105 -0.02445 0.05110 0.69923 1.26574 1.56809 1.86598 2.00795 2.15720 3.05202 3.14938 3.45744 3.52474 3.64206 3.67430 3.85018 3.94456 4.19712 4.44553 4.46082 4.49336 4.64849 4.69939 4.72782 4.83123 4.88485 5.03203 5.07451 5.18609 5.95516 6.13870 6.71213 6.81993 6.86727 7.03655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.010 4.010 3 Si 0.727 3.273 4 C -0.313 4.313 5 C 0.105 3.895 6 N -0.571 5.571 7 C 0.329 3.671 8 N -0.649 5.649 9 C 0.166 3.834 10 C 0.077 3.923 11 O -0.583 6.583 12 C -0.151 4.151 13 C 0.081 3.919 14 H 0.091 0.909 15 O -0.568 6.568 16 C -0.134 4.134 17 S 0.097 5.903 18 H 0.394 0.606 19 H 0.117 0.883 20 H -0.269 1.269 21 H -0.272 1.272 22 H 0.178 0.822 23 H 0.420 0.580 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.393 0.607 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.396 0.604 30 H 0.060 0.940 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -0.568 -5.751 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.124 4.124 3 Si 0.631 3.369 4 C -0.436 4.436 5 C -0.046 4.046 6 N -0.298 5.298 7 C -0.042 4.042 8 N -0.287 5.287 9 C 0.077 3.923 10 C -0.002 4.002 11 O -0.390 6.390 12 C -0.189 4.189 13 C 0.021 3.979 14 H 0.109 0.891 15 O -0.376 6.376 16 C -0.173 4.173 17 S 0.346 5.654 18 H 0.244 0.756 19 H 0.135 0.865 20 H -0.194 1.194 21 H -0.198 1.198 22 H 0.195 0.805 23 H 0.258 0.742 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.242 0.758 27 H 0.139 0.861 28 H 0.101 0.899 29 H 0.246 0.754 30 H 0.078 0.922 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.848 0.217 -4.714 5.068 hybrid contribution -0.383 -1.128 0.206 1.209 sum 1.465 -0.912 -4.509 4.828 Atomic orbital electron populations 1.86466 1.16906 1.82109 1.50215 1.24164 0.84884 1.09174 0.94212 0.94085 0.79137 0.76357 0.87333 1.25623 1.13362 0.99366 1.05254 1.21463 0.97546 0.93530 0.92045 1.66522 1.18636 1.33835 1.10779 1.23865 0.94615 0.93448 0.92234 1.43529 1.49601 1.17512 1.18068 1.21336 0.93770 0.83837 0.93377 1.22460 0.94868 0.89796 0.93101 1.86414 1.37368 1.47423 1.67834 1.23947 0.95575 1.02792 0.96601 1.22796 0.90638 0.92294 0.92130 0.89137 1.86483 1.34300 1.65541 1.51278 1.23421 0.94893 0.98549 1.00390 1.83830 1.51375 1.13330 1.16892 0.75573 0.86544 1.19397 1.19816 0.80511 0.74156 0.90810 0.93956 0.75820 0.86056 0.89865 0.75375 0.92160 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.03 12.87 -148.98 -1.92 -2.95 16 2 C -0.01 -0.02 2.99 71.23 0.21 0.19 16 3 Si 0.73 0.63 31.05 68.60 2.13 2.76 16 4 C -0.31 -1.31 5.74 24.57 0.14 -1.17 16 5 C 0.11 0.68 11.22 83.54 0.94 1.61 16 6 N -0.57 -4.69 8.43 -202.02 -1.70 -6.39 16 7 C 0.33 2.03 7.55 179.32 1.35 3.39 16 8 N -0.65 -1.91 4.71 -308.33 -1.45 -3.37 16 9 C 0.17 0.09 0.80 4.12 0.00 0.09 16 10 C 0.08 0.03 6.27 71.98 0.45 0.48 16 11 O -0.58 -0.60 13.56 -148.98 -2.02 -2.62 16 12 C -0.15 0.63 7.21 31.18 0.22 0.86 16 13 C 0.08 -0.22 5.28 31.18 0.16 -0.06 16 14 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 15 O -0.57 0.13 13.10 -148.98 -1.95 -1.82 16 16 C -0.13 -0.12 6.89 31.12 0.21 0.10 16 17 S 0.10 0.34 20.57 -56.49 -1.16 -0.82 16 18 H 0.39 -2.15 8.70 -74.05 -0.64 -2.80 16 19 H 0.12 0.28 7.96 -2.38 -0.02 0.26 16 20 H -0.27 -1.64 7.11 99.48 0.71 -0.94 16 21 H -0.27 -1.61 7.11 99.48 0.71 -0.91 16 22 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 23 H 0.42 0.32 8.78 -92.71 -0.81 -0.49 16 24 H 0.07 -0.29 8.11 -2.39 -0.02 -0.31 16 25 H 0.04 0.19 7.23 -2.39 -0.02 0.17 16 26 H 0.39 -2.41 9.12 -74.05 -0.68 -3.09 16 27 H 0.12 -0.88 8.07 -2.39 -0.02 -0.90 16 28 H 0.08 -0.35 8.09 -2.39 -0.02 -0.37 16 29 H 0.40 -3.38 9.12 -74.06 -0.68 -4.06 16 30 H 0.06 0.47 7.38 -2.38 -0.02 0.45 16 31 H 0.12 -0.36 8.10 -2.39 -0.02 -0.37 16 Total: 0.00 -16.98 279.31 -5.94 -22.92 By element: Atomic # 1 Polarization: -11.63 SS G_CDS: -1.57 Total: -13.20 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 3.70 Total: 5.49 kcal Atomic # 7 Polarization: -6.61 SS G_CDS: -3.16 Total: -9.76 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -5.89 Total: -7.39 kcal Atomic # 14 Polarization: 0.63 SS G_CDS: 2.13 Total: 2.76 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.16 Total: -0.82 kcal Total: -16.98 -5.94 -22.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341544_15704118.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -16.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds