Wall clock time and date at job start Mon Mar 8 2021 07:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33321 * 125.95194 * 2 1 4 4 C 1.50705 * 122.70698 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47268 * 330.00456 * 4 3 2 6 6 Si 1.86298 * 109.47114 * 210.00111 * 4 3 2 7 7 N 1.32117 * 114.58013 * 179.75346 * 3 2 1 8 8 C 1.29686 * 116.86651 * 0.47148 * 7 3 2 9 9 N 1.38604 * 124.94977 * 179.82087 * 8 7 3 10 10 C 1.46495 * 119.99913 * 185.41387 * 9 8 7 11 11 C 1.53002 * 112.85395 * 64.62625 * 10 9 8 12 12 O 1.42894 * 109.47108 * 44.76284 * 11 10 9 13 13 C 1.53788 * 113.69211 * 195.89823 * 10 9 8 14 14 C 1.53778 * 87.08257 * 89.12378 * 13 10 9 15 15 H 1.09001 * 113.68896 * 139.99301 * 14 13 10 16 16 O 1.42899 * 113.61255 * 270.88457 * 14 13 10 17 17 C 1.53779 * 87.08218 * 25.43410 * 14 13 10 18 18 S 1.70959 * 110.09859 * 359.54579 * 8 7 3 19 19 H 1.09002 * 109.46768 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47221 * 300.02371 * 1 2 3 21 21 H 1.08997 * 109.47140 * 60.03181 * 1 2 3 22 22 H 1.09005 * 109.46994 * 90.00760 * 4 3 2 23 23 H 0.96699 * 114.00126 * 299.99986 * 5 4 3 24 24 H 1.48498 * 110.00320 * 180.02562 * 6 4 3 25 25 H 1.48505 * 110.00216 * 301.32442 * 6 4 3 26 26 H 0.97002 * 120.00359 * 5.40749 * 9 8 7 27 27 H 1.09000 * 109.47372 * 164.76259 * 11 10 9 28 28 H 1.08999 * 109.46660 * 284.75754 * 11 10 9 29 29 H 0.96693 * 114.00359 * 180.02562 * 12 11 10 30 30 H 1.08996 * 113.61313 * 203.67609 * 13 10 9 31 31 H 1.09002 * 113.60830 * 334.57204 * 13 10 9 32 32 H 0.96700 * 114.00415 * 277.49514 * 16 14 13 33 33 H 1.09002 * 113.61658 * 220.01915 * 17 14 13 34 34 H 1.09000 * 113.61423 * 89.11302 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6745 6 14 2.9325 3.6147 -0.8787 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2384 -0.8926 0.0006 10 6 5.5087 -2.3269 -0.1253 11 6 5.0675 -2.8985 -1.4742 12 8 5.4780 -2.0179 -2.5220 13 6 6.9401 -2.7233 0.2733 14 6 6.4094 -2.8950 1.7063 15 1 6.8217 -3.7604 2.2252 16 8 6.4704 -1.6992 2.4864 17 6 5.0287 -3.1523 1.0802 18 16 2.5414 -1.4260 0.0001 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5142 0.8898 21 1 -0.3633 0.5133 -0.8902 22 1 1.6089 2.8217 1.0270 23 1 0.5239 2.2118 -1.5960 24 1 2.4035 5.0023 -0.8856 25 1 4.2561 3.5796 -0.2062 26 1 5.9741 -0.2660 0.0842 27 1 5.5253 -3.8767 -1.6216 28 1 3.9823 -2.9995 -1.4885 29 1 5.2308 -2.3178 -3.4073 30 1 7.2780 -3.6543 -0.1817 31 1 7.6623 -1.9136 0.1691 32 1 7.3364 -1.5319 2.8829 33 1 4.2078 -2.6890 1.6276 34 1 4.8440 -4.2007 0.8458 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341544_15704122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:28 Heat of formation + Delta-G solvation = -44.709191 kcal Electronic energy + Delta-G solvation = -19945.275849 eV Core-core repulsion = 16779.952585 eV Total energy + Delta-G solvation = -3165.323264 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47922 -40.79138 -37.86260 -37.55993 -36.20103 -34.50911 -32.35082 -29.38451 -28.48894 -27.13048 -25.61298 -24.53833 -23.04647 -20.92431 -20.64640 -18.81099 -18.33769 -18.22456 -17.87642 -17.21426 -16.74490 -16.56293 -16.34430 -15.69318 -15.50312 -15.22910 -14.95162 -14.33452 -13.99087 -13.83144 -13.71933 -13.50226 -13.41960 -13.19400 -12.76350 -12.73707 -12.40050 -12.24251 -12.02097 -11.49773 -11.15892 -10.92735 -10.69119 -10.56348 -10.33387 -9.94919 -8.54888 -4.98962 0.02393 0.19825 0.77930 1.28615 1.69374 1.84980 1.90286 2.12333 2.95153 3.05648 3.37412 3.44470 3.52941 3.58032 3.71996 4.10226 4.20235 4.33299 4.38249 4.45054 4.47904 4.49376 4.62664 4.74051 4.84455 4.85637 4.87709 4.92697 4.98548 5.12570 5.34263 5.77422 6.30060 6.65844 6.82077 6.83498 6.99726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.259 4.259 3 C 0.053 3.947 4 C -0.029 4.029 5 O -0.538 6.538 6 Si 0.790 3.210 7 N -0.582 5.582 8 C 0.324 3.676 9 N -0.650 5.650 10 C 0.145 3.855 11 C 0.067 3.933 12 O -0.582 6.582 13 C -0.151 4.151 14 C 0.081 3.919 15 H 0.098 0.902 16 O -0.572 6.572 17 C -0.150 4.150 18 S 0.120 5.880 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.394 0.606 24 H -0.289 1.289 25 H -0.307 1.307 26 H 0.408 0.592 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.395 0.605 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.396 0.604 33 H 0.066 0.934 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -8.076 -3.126 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.382 4.382 3 C -0.077 4.077 4 C -0.142 4.142 5 O -0.345 6.345 6 Si 0.697 3.303 7 N -0.310 5.310 8 C -0.048 4.048 9 N -0.287 5.287 10 C 0.057 3.943 11 C -0.013 4.013 12 O -0.390 6.390 13 C -0.188 4.188 14 C 0.022 3.978 15 H 0.115 0.885 16 O -0.380 6.380 17 C -0.188 4.188 18 S 0.370 5.630 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.113 0.887 22 H 0.128 0.872 23 H 0.244 0.756 24 H -0.217 1.217 25 H -0.234 1.234 26 H 0.246 0.754 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.245 0.755 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.042 -7.672 -2.192 8.236 hybrid contribution 0.430 0.710 0.532 0.986 sum 2.471 -6.961 -1.660 7.571 Atomic orbital electron populations 1.20157 0.85283 1.02098 1.03850 1.25447 1.02175 0.93276 1.17269 1.20218 0.86776 0.97740 1.02968 1.24408 0.92702 0.95317 1.01797 1.86478 1.28069 1.89611 1.30333 0.93208 0.73799 0.74162 0.89127 1.65949 1.17988 1.17843 1.29252 1.23374 0.92613 0.91390 0.97376 1.43396 1.01119 1.06749 1.77467 1.21707 0.99491 0.79329 0.93732 1.22675 0.98939 0.93458 0.86231 1.86491 1.82585 1.51038 1.18877 1.23964 0.93768 1.04055 0.97045 1.22744 0.96336 0.88101 0.90614 0.88456 1.86507 1.39092 1.43448 1.68917 1.23737 0.97732 1.02314 0.95051 1.83593 0.95450 1.09894 1.74096 0.91667 0.91603 0.88653 0.87218 0.75551 1.21661 1.23446 0.75384 0.89204 0.93172 0.75541 0.84996 0.90429 0.75419 0.91544 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.08 8.91 71.24 0.63 0.56 16 2 C -0.26 -1.56 6.50 24.58 0.16 -1.40 16 3 C 0.05 0.46 5.91 41.41 0.24 0.71 16 4 C -0.03 -0.17 2.94 71.24 0.21 0.04 16 5 O -0.54 -1.15 10.17 -148.98 -1.52 -2.67 16 6 Si 0.79 4.95 32.09 68.60 2.20 7.15 16 7 N -0.58 -6.94 8.95 -189.87 -1.70 -8.64 16 8 C 0.32 2.74 7.80 179.32 1.40 4.14 16 9 N -0.65 -3.14 4.49 -308.32 -1.38 -4.52 16 10 C 0.14 -0.26 0.78 4.14 0.00 -0.26 16 11 C 0.07 -0.27 6.26 71.98 0.45 0.19 16 12 O -0.58 0.31 13.34 -148.98 -1.99 -1.67 16 13 C -0.15 0.88 7.19 31.12 0.22 1.11 16 14 C 0.08 -0.37 5.28 31.12 0.16 -0.21 16 15 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 16 O -0.57 -0.18 13.09 -148.98 -1.95 -2.13 16 17 C -0.15 0.51 6.56 31.12 0.20 0.72 16 18 S 0.12 0.50 19.01 -56.49 -1.07 -0.57 16 19 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 20 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 21 H 0.10 -0.15 6.40 -2.39 -0.02 -0.17 16 22 H 0.11 0.81 7.96 -2.38 -0.02 0.80 16 23 H 0.39 -2.11 8.13 -74.06 -0.60 -2.71 16 24 H -0.29 -2.97 7.11 99.48 0.71 -2.26 16 25 H -0.31 -4.70 7.11 99.48 0.71 -3.99 16 26 H 0.41 2.64 8.78 -92.71 -0.81 1.83 16 27 H 0.09 -0.85 7.86 -2.39 -0.02 -0.87 16 28 H 0.05 -0.18 6.55 -2.39 -0.02 -0.19 16 29 H 0.40 -3.27 9.12 -74.06 -0.68 -3.95 16 30 H 0.13 -1.40 7.91 -2.39 -0.02 -1.42 16 31 H 0.08 -0.30 8.09 -2.39 -0.02 -0.32 16 32 H 0.40 -2.90 9.12 -74.06 -0.68 -3.58 16 33 H 0.07 0.14 6.78 -2.39 -0.02 0.12 16 34 H 0.14 -1.33 8.10 -2.39 -0.02 -1.35 16 Total: 0.00 -21.01 292.71 -5.27 -26.27 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -1.55 Total: -18.81 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.69 Total: 5.58 kcal Atomic # 7 Polarization: -10.08 SS G_CDS: -3.08 Total: -13.16 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -5.45 Total: -6.47 kcal Atomic # 14 Polarization: 4.95 SS G_CDS: 2.20 Total: 7.15 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.07 Total: -0.57 kcal Total: -21.01 -5.27 -26.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341544_15704122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.435 kcal (2) G-P(sol) polarization free energy of solvation -21.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds