Wall clock time and date at job start Mon Mar 8 2021 07:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00193 * 2 1 4 4 H 1.08997 * 112.84974 * 18.80482 * 3 2 1 5 5 C 1.53780 * 113.61677 * 150.00112 * 3 2 1 6 6 C 1.53787 * 87.08331 * 89.20101 * 5 3 2 7 7 C 1.52994 * 113.61473 * 140.06369 * 6 5 3 8 8 O 1.42902 * 109.46859 * 186.79883 * 7 6 5 9 9 N 1.46499 * 113.61502 * 270.88946 * 6 5 3 10 10 C 1.39004 * 119.99885 * 301.52063 * 9 6 5 11 11 N 1.32392 * 119.70864 * 174.64590 * 10 9 6 12 12 C 1.31973 * 121.62445 * 180.02562 * 11 10 9 13 13 C 1.38017 * 120.85591 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.33609 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47035 * 119.97371 * 14 13 12 16 16 Si 1.86299 * 109.47107 * 359.97438 * 14 13 12 17 17 C 1.38883 * 119.33247 * 359.97438 * 13 12 11 18 18 C 1.38301 * 118.50451 * 0.25890 * 17 13 12 19 19 C 1.53785 * 113.69388 * 247.53841 * 3 2 1 20 20 H 1.09002 * 109.46993 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46653 * 299.99951 * 1 2 3 22 22 H 1.08995 * 109.47538 * 59.99514 * 1 2 3 23 23 H 1.09000 * 113.61314 * 334.65739 * 5 3 2 24 24 H 1.08994 * 113.61756 * 203.75073 * 5 3 2 25 25 H 1.08999 * 109.47468 * 306.80167 * 7 6 5 26 26 H 1.09001 * 109.47147 * 66.80098 * 7 6 5 27 27 H 0.96703 * 113.99485 * 180.02562 * 8 7 6 28 28 H 0.97003 * 120.00281 * 121.52230 * 9 6 5 29 29 H 1.07996 * 119.57014 * 179.97438 * 12 11 10 30 30 H 1.08995 * 109.47533 * 239.97644 * 14 13 12 31 31 H 0.96697 * 114.00146 * 300.00746 * 15 14 13 32 32 H 1.48501 * 110.00295 * 58.67773 * 16 14 13 33 33 H 1.48493 * 110.00149 * 179.97438 * 16 14 13 34 34 H 1.07999 * 120.75198 * 179.97438 * 17 13 12 35 35 H 1.07996 * 120.45596 * 179.72347 * 18 17 13 36 36 H 1.08988 * 113.61706 * 156.32501 * 19 3 2 37 37 H 1.09003 * 113.60987 * 25.41958 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0788 0.3238 5 6 3.3755 1.3719 0.7045 6 6 4.0063 1.0352 -0.6571 7 6 5.2916 1.8131 -0.9462 8 8 5.7137 1.5542 -2.2867 9 7 4.1447 -0.4028 -0.9003 10 6 4.8872 -1.1873 -0.0254 11 7 4.9214 -2.5006 -0.1895 12 6 5.6134 -3.2812 0.6188 13 6 6.3309 -2.7513 1.6720 14 6 7.1176 -3.6536 2.5875 15 8 8.4993 -3.2919 2.5408 16 14 6.9198 -5.4223 2.0366 17 6 6.3215 -1.3781 1.8790 18 6 5.5833 -0.5859 1.0187 19 6 2.7531 1.6511 -1.3014 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 3.5176 0.5948 1.4555 24 1 3.6305 2.3666 1.0698 25 1 5.1060 2.8802 -0.8234 26 1 6.0710 1.4978 -0.2526 27 1 6.5250 2.0157 -2.5396 28 1 3.7182 -0.8075 -1.6718 29 1 5.6177 -4.3486 0.4544 30 1 6.7485 -3.5474 3.6075 31 1 8.8949 -3.3626 1.6613 32 1 7.3900 -5.5737 0.6361 33 1 7.6913 -6.3222 2.9310 34 1 6.8744 -0.9390 2.6963 35 1 5.5501 0.4851 1.1532 36 1 2.8379 2.7222 -1.4844 37 1 2.3926 1.0995 -2.1696 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341584_13915762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:37 Heat of formation + Delta-G solvation = -39.810873 kcal Electronic energy + Delta-G solvation = -21177.996611 eV Core-core repulsion = 17923.733508 eV Total energy + Delta-G solvation = -3254.263103 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.90257 -40.67708 -38.26010 -37.82955 -36.67792 -34.76782 -33.32085 -31.20831 -28.98062 -27.39309 -27.01845 -26.24644 -24.48094 -23.46912 -22.52040 -20.44045 -18.66858 -18.48257 -18.20164 -17.66425 -17.51684 -16.74237 -16.40906 -16.22199 -16.21237 -15.93955 -15.57362 -15.27434 -14.75119 -14.63788 -14.33808 -13.99420 -13.67902 -13.39221 -13.30849 -13.11327 -12.77045 -12.46285 -12.24053 -12.05238 -11.98541 -11.63066 -11.02886 -10.82127 -10.68774 -10.54529 -10.47522 -10.36004 -8.61435 -4.91681 0.26536 0.44333 1.33999 1.60219 1.94804 2.06877 2.73702 2.85807 3.01052 3.44115 3.47962 3.59681 3.63146 3.76063 3.80217 4.00320 4.08555 4.15577 4.27369 4.33379 4.47290 4.51280 4.53206 4.57144 4.63481 4.66966 4.71352 4.80750 4.81536 4.88777 4.98724 5.02135 5.06464 5.32092 5.59093 6.09825 6.31196 6.49666 6.56565 6.83962 7.20435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.059 3.941 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.156 3.844 7 C 0.068 3.932 8 O -0.587 6.587 9 N -0.683 5.683 10 C 0.408 3.592 11 N -0.571 5.571 12 C 0.145 3.855 13 C -0.239 4.239 14 C -0.059 4.059 15 O -0.548 6.548 16 Si 0.752 3.248 17 C -0.012 4.012 18 C -0.245 4.245 19 C -0.144 4.144 20 H 0.085 0.915 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.136 0.864 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.393 0.607 28 H 0.401 0.599 29 H 0.164 0.836 30 H 0.126 0.874 31 H 0.384 0.616 32 H -0.288 1.288 33 H -0.297 1.297 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 5.821 1.261 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.001 3.999 4 H 0.115 0.885 5 C -0.184 4.184 6 C 0.069 3.931 7 C -0.011 4.011 8 O -0.394 6.394 9 N -0.311 5.311 10 C 0.172 3.828 11 N -0.289 5.289 12 C -0.012 4.012 13 C -0.244 4.244 14 C -0.170 4.170 15 O -0.356 6.356 16 Si 0.658 3.342 17 C -0.038 4.038 18 C -0.270 4.270 19 C -0.182 4.182 20 H 0.104 0.896 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.154 0.846 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.243 0.757 28 H 0.236 0.764 29 H 0.181 0.819 30 H 0.144 0.856 31 H 0.233 0.767 32 H -0.214 1.214 33 H -0.225 1.225 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.495 4.523 0.951 5.795 hybrid contribution 1.577 0.998 -0.320 1.893 sum -1.918 5.522 0.631 5.880 Atomic orbital electron populations 1.22918 0.79919 1.03275 1.00785 1.87946 1.20791 1.27283 1.94568 1.23157 0.94904 0.85573 0.96232 0.88468 1.23821 0.94304 1.04569 0.95675 1.21389 0.94196 0.79739 0.97825 1.22768 0.95378 0.99129 0.83854 1.86473 1.48272 1.74621 1.30073 1.43978 1.54095 1.05660 1.27405 1.18539 0.88217 0.87651 0.88401 1.67128 1.25038 1.04591 1.32104 1.22425 0.90488 0.99098 0.89156 1.20928 1.06224 0.96100 1.01166 1.24851 0.81413 1.07281 1.03419 1.86549 1.23402 1.89307 1.36323 0.94230 0.90363 0.73360 0.76238 1.21386 0.93156 0.92502 0.96738 1.21751 1.04408 1.01986 0.98840 1.23747 0.93766 1.02758 0.97917 0.89627 0.92962 0.93220 0.90689 0.84602 0.89839 0.93155 0.75732 0.76369 0.81941 0.85584 0.76719 1.21450 1.22459 0.83495 0.83300 0.85515 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.39 -1.35 10.14 -148.98 -1.51 -2.86 16 3 C 0.06 -0.13 4.37 31.12 0.14 0.00 16 4 H 0.10 -0.59 7.87 -2.39 -0.02 -0.61 16 5 C -0.15 0.53 5.90 31.12 0.18 0.71 16 6 C 0.16 -0.15 0.66 4.13 0.00 -0.14 16 7 C 0.07 -0.22 6.20 71.98 0.45 0.23 16 8 O -0.59 -0.36 13.54 -148.98 -2.02 -2.38 16 9 N -0.68 -3.49 4.68 -302.53 -1.42 -4.90 16 10 C 0.41 3.07 7.32 133.07 0.97 4.04 16 11 N -0.57 -5.81 10.39 -193.27 -2.01 -7.82 16 12 C 0.15 0.86 9.84 84.62 0.83 1.70 16 13 C -0.24 -0.81 5.40 -19.76 -0.11 -0.92 16 14 C -0.06 -0.07 2.84 71.24 0.20 0.14 16 15 O -0.55 -1.98 12.78 -148.98 -1.90 -3.88 16 16 Si 0.75 0.35 29.82 68.60 2.05 2.39 16 17 C -0.01 -0.04 9.76 22.44 0.22 0.18 16 18 C -0.25 -0.87 7.36 22.50 0.17 -0.71 16 19 C -0.14 0.41 7.22 31.12 0.22 0.64 16 20 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 21 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.07 0.04 6.43 -2.39 -0.02 0.03 16 24 H 0.14 -1.35 8.10 -2.39 -0.02 -1.36 16 25 H 0.08 -0.71 8.09 -2.39 -0.02 -0.73 16 26 H 0.05 -0.15 5.98 -2.39 -0.01 -0.16 16 27 H 0.39 -2.77 9.12 -74.06 -0.68 -3.44 16 28 H 0.40 3.03 8.84 -92.71 -0.82 2.21 16 29 H 0.16 0.33 4.88 -2.91 -0.01 0.31 16 30 H 0.13 -0.14 7.96 -2.39 -0.02 -0.15 16 31 H 0.38 -0.45 8.70 -74.06 -0.64 -1.09 16 32 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 33 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 34 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 35 H 0.15 -0.10 4.44 -2.91 -0.01 -0.11 16 36 H 0.13 -0.94 8.07 -2.39 -0.02 -0.96 16 37 H 0.07 0.04 8.11 -2.39 -0.02 0.02 16 Total: 0.00 -17.98 302.35 -3.28 -21.26 By element: Atomic # 1 Polarization: -7.89 SS G_CDS: -0.98 Total: -8.87 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 4.51 Total: 7.06 kcal Atomic # 7 Polarization: -9.30 SS G_CDS: -3.42 Total: -12.72 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -5.43 Total: -9.12 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: 2.05 Total: 2.39 kcal Total: -17.98 -3.28 -21.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341584_13915762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.553 kcal (2) G-P(sol) polarization free energy of solvation -17.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds