Wall clock time and date at job start Mon Mar 8 2021 07:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99932 * 2 1 4 4 H 1.08995 * 112.91123 * 341.25448 * 3 2 1 5 5 C 1.53958 * 113.66242 * 112.54966 * 3 2 1 6 6 C 1.53792 * 87.10968 * 139.89200 * 5 3 2 7 7 C 1.52991 * 113.69349 * 89.19812 * 6 5 3 8 8 O 1.42901 * 109.47406 * 83.93707 * 7 6 5 9 9 N 1.46499 * 113.61065 * 220.09377 * 6 5 3 10 10 C 1.38614 * 119.99848 * 154.21453 * 9 6 5 11 11 N 1.29686 * 124.94796 * 5.53259 * 10 9 6 12 12 C 1.32119 * 116.86669 * 179.81648 * 11 10 9 13 13 C 1.33331 * 114.57675 * 0.47549 * 12 11 10 14 14 C 1.50700 * 125.95323 * 179.74848 * 13 12 11 15 15 O 1.42902 * 109.46943 * 65.02547 * 14 13 12 16 16 Si 1.86296 * 109.47280 * 185.02513 * 14 13 12 17 17 S 1.70965 * 124.94735 * 185.84358 * 10 9 6 18 18 C 1.53784 * 113.61178 * 209.99853 * 3 2 1 19 19 H 1.08999 * 109.47047 * 300.00136 * 1 2 3 20 20 H 1.08996 * 109.46941 * 59.99769 * 1 2 3 21 21 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.08999 * 113.53997 * 25.34105 * 5 3 2 23 23 H 1.08996 * 113.74669 * 254.46620 * 5 3 2 24 24 H 1.09000 * 109.47355 * 203.94233 * 7 6 5 25 25 H 1.08999 * 109.46889 * 323.94009 * 7 6 5 26 26 H 0.96693 * 113.99874 * 180.02562 * 8 7 6 27 27 H 0.97001 * 120.00596 * 334.20605 * 9 6 5 28 28 H 1.07993 * 122.71669 * 180.22929 * 12 11 10 29 29 H 1.08998 * 109.47141 * 305.03238 * 14 13 12 30 30 H 0.96703 * 114.00143 * 179.97438 * 15 14 13 31 31 H 1.48493 * 110.00257 * 300.00068 * 16 14 13 32 32 H 1.48502 * 109.99923 * 61.32331 * 16 14 13 33 33 H 1.09000 * 113.61592 * 105.47717 * 18 3 2 34 34 H 1.09001 * 113.61373 * 334.65258 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 -0.3226 5 6 2.7555 1.6500 1.3023 6 6 3.8253 2.3174 0.4218 7 6 3.5481 3.7935 0.1302 8 8 4.0295 4.5917 1.2133 9 7 5.1960 2.0754 0.8788 10 6 6.2462 2.1220 -0.0246 11 7 6.1403 2.4695 -1.2696 12 6 7.2488 2.4607 -1.9883 13 6 8.3388 2.0792 -1.3219 14 6 9.7306 1.9716 -1.8897 15 8 10.1935 3.2704 -2.2651 16 14 10.8718 1.2531 -0.6044 17 16 7.8685 1.7226 0.3380 18 6 3.3756 1.3718 -0.7045 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1177 0.7745 1.8413 23 1 2.2190 2.3496 1.9432 24 1 4.0566 4.0839 -0.7892 25 1 2.4750 3.9459 0.0156 26 1 3.8867 5.5408 1.0962 27 1 5.3688 1.8827 1.8137 28 1 7.2698 2.7362 -3.0323 29 1 9.7164 1.3237 -2.7661 30 1 11.0853 3.2773 -2.6390 31 1 10.9000 2.1274 0.5956 32 1 10.4194 -0.1105 -0.2288 33 1 3.3385 1.8471 -1.6847 34 1 3.9082 0.4208 -0.7150 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18341584_15704118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:41 Heat of formation + Delta-G solvation = -33.436596 kcal Electronic energy + Delta-G solvation = -19353.983867 eV Core-core repulsion = 16189.149420 eV Total energy + Delta-G solvation = -3164.834447 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51303 -40.22561 -38.25323 -37.68487 -36.76637 -34.81864 -31.29796 -28.76173 -27.36626 -27.05487 -26.36721 -24.78734 -23.48343 -21.11816 -19.87647 -19.32860 -18.54604 -18.39836 -17.87526 -17.38633 -16.83147 -16.24699 -16.04004 -15.88183 -15.62943 -15.43442 -15.06325 -14.96553 -14.38617 -14.17940 -13.69589 -13.46071 -13.14201 -12.90616 -12.76598 -12.49122 -12.33659 -12.00728 -11.89945 -11.75130 -11.15908 -11.01953 -10.53799 -10.51336 -10.23267 -10.06305 -8.65858 -5.16978 0.05412 0.17548 0.75778 1.28463 1.62655 1.98234 2.08674 2.13802 2.81392 2.95289 3.22809 3.49332 3.50397 3.63244 3.73546 3.88407 4.03892 4.13367 4.30487 4.36642 4.40079 4.45797 4.57561 4.62125 4.71193 4.72565 4.82608 4.85725 4.98720 5.00297 5.20527 5.93212 6.10243 6.16936 6.60228 6.63299 7.08587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.063 3.937 4 H 0.093 0.907 5 C -0.152 4.152 6 C 0.171 3.829 7 C 0.084 3.916 8 O -0.566 6.566 9 N -0.667 5.667 10 C 0.339 3.661 11 N -0.546 5.546 12 C 0.124 3.876 13 C -0.264 4.264 14 C -0.016 4.016 15 O -0.546 6.546 16 Si 0.665 3.335 17 S 0.066 5.934 18 C -0.121 4.121 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.382 0.618 27 H 0.417 0.583 28 H 0.177 0.823 29 H 0.081 0.919 30 H 0.382 0.618 31 H -0.239 1.239 32 H -0.243 1.243 33 H 0.086 0.914 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 0.087 -1.248 1.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.291 6.291 3 C 0.004 3.996 4 H 0.111 0.889 5 C -0.190 4.190 6 C 0.081 3.919 7 C 0.005 3.995 8 O -0.372 6.372 9 N -0.305 5.305 10 C -0.031 4.031 11 N -0.272 5.272 12 C -0.027 4.027 13 C -0.387 4.387 14 C -0.129 4.129 15 O -0.352 6.352 16 Si 0.565 3.435 17 S 0.315 5.685 18 C -0.159 4.159 19 H 0.062 0.938 20 H 0.062 0.938 21 H 0.106 0.894 22 H 0.118 0.882 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.229 0.771 27 H 0.255 0.745 28 H 0.194 0.806 29 H 0.099 0.901 30 H 0.230 0.770 31 H -0.162 1.162 32 H -0.167 1.167 33 H 0.105 0.895 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.480 -0.988 0.676 1.290 hybrid contribution -0.794 1.072 -0.922 1.622 sum -1.274 0.084 -0.245 1.300 Atomic orbital electron populations 1.22846 0.80716 1.03162 1.00136 1.87965 1.20022 1.26633 1.94487 1.23596 0.94000 0.85901 0.96097 0.88925 1.23873 0.96206 1.01177 0.97752 1.21384 0.80313 0.93030 0.97137 1.22288 0.97631 0.89256 0.90339 1.86439 1.84577 1.21760 1.44375 1.43774 1.02365 1.75910 1.08487 1.23754 0.92064 0.95801 0.91468 1.66480 1.30366 1.27096 1.03235 1.21335 0.84853 0.95885 1.00656 1.24246 0.99347 1.20367 0.94695 1.23667 0.94379 0.89624 1.05274 1.86526 1.36699 1.27115 1.84891 0.95256 0.87916 0.80400 0.79901 1.84116 1.03145 1.68394 1.12851 1.23471 0.94319 0.99840 0.98284 0.93830 0.93758 0.89384 0.88207 0.89830 0.91712 0.92697 0.77126 0.74523 0.80650 0.90101 0.77020 1.16249 1.16740 0.89544 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.37 -0.74 10.72 -35.23 -0.38 -1.12 16 3 C 0.06 0.01 3.97 -25.82 -0.10 -0.09 16 4 H 0.09 -0.13 7.41 -51.93 -0.39 -0.52 16 5 C -0.15 0.00 7.22 -25.82 -0.19 -0.18 16 6 C 0.17 0.16 0.98 -131.00 -0.13 0.03 16 7 C 0.08 0.05 6.42 37.15 0.24 0.28 16 8 O -0.57 -0.70 13.39 -35.23 -0.47 -1.17 16 9 N -0.67 -1.26 5.09 -48.80 -0.25 -1.51 16 10 C 0.34 1.23 7.70 -87.68 -0.68 0.56 16 11 N -0.55 -2.33 9.25 -15.21 -0.14 -2.47 16 12 C 0.12 0.45 11.24 -19.14 -0.22 0.23 16 13 C -0.26 -0.90 5.76 -36.02 -0.21 -1.11 16 14 C -0.02 -0.01 2.98 36.01 0.11 0.10 16 15 O -0.55 -0.41 12.86 -35.23 -0.45 -0.86 16 16 Si 0.67 -0.03 31.07 -169.99 -5.28 -5.31 16 17 S 0.07 0.24 20.59 -107.50 -2.21 -1.98 16 18 C -0.12 -0.15 6.30 -25.91 -0.16 -0.31 16 19 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 20 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 21 H 0.09 -0.12 8.14 -51.93 -0.42 -0.55 16 22 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 23 H 0.08 -0.05 8.10 -51.93 -0.42 -0.47 16 24 H 0.06 0.12 7.84 -51.93 -0.41 -0.29 16 25 H 0.05 -0.08 7.37 -51.93 -0.38 -0.46 16 26 H 0.38 -0.94 9.12 45.56 0.42 -0.53 16 27 H 0.42 0.24 8.88 -40.82 -0.36 -0.12 16 28 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 29 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.38 -1.72 8.74 45.56 0.40 -1.32 16 31 H -0.24 -0.77 7.11 56.52 0.40 -0.37 16 32 H -0.24 -0.58 7.11 56.52 0.40 -0.18 16 33 H 0.09 0.11 8.10 -51.93 -0.42 -0.31 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 302.89 15.07 4.56 4.56 Total: 0.00 -7.95 302.89 -8.57 -16.52 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -3.71 Total: -7.26 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.24 Total: 0.58 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: -0.39 Total: -3.97 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: -1.30 Total: -3.15 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: -5.28 Total: -5.31 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.21 Total: -1.98 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -7.95 -8.57 -16.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341584_15704118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.919 kcal (2) G-P(sol) polarization free energy of solvation -7.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds