Wall clock time and date at job start Mon Mar 8 2021 07:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99932 * 2 1 4 4 H 1.08995 * 112.91123 * 341.25448 * 3 2 1 5 5 C 1.53958 * 113.66242 * 112.54966 * 3 2 1 6 6 C 1.53792 * 87.10968 * 139.89200 * 5 3 2 7 7 C 1.52991 * 113.69349 * 89.19812 * 6 5 3 8 8 O 1.42901 * 109.47406 * 83.93707 * 7 6 5 9 9 N 1.46499 * 113.61065 * 220.09377 * 6 5 3 10 10 C 1.38614 * 119.99848 * 154.21453 * 9 6 5 11 11 N 1.29686 * 124.94796 * 5.53259 * 10 9 6 12 12 C 1.32119 * 116.86669 * 179.81648 * 11 10 9 13 13 C 1.33331 * 114.57675 * 0.47549 * 12 11 10 14 14 C 1.50700 * 125.95323 * 179.74848 * 13 12 11 15 15 O 1.42902 * 109.46943 * 65.02547 * 14 13 12 16 16 Si 1.86296 * 109.47280 * 185.02513 * 14 13 12 17 17 S 1.70965 * 124.94735 * 185.84358 * 10 9 6 18 18 C 1.53784 * 113.61178 * 209.99853 * 3 2 1 19 19 H 1.08999 * 109.47047 * 300.00136 * 1 2 3 20 20 H 1.08996 * 109.46941 * 59.99769 * 1 2 3 21 21 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.08999 * 113.53997 * 25.34105 * 5 3 2 23 23 H 1.08996 * 113.74669 * 254.46620 * 5 3 2 24 24 H 1.09000 * 109.47355 * 203.94233 * 7 6 5 25 25 H 1.08999 * 109.46889 * 323.94009 * 7 6 5 26 26 H 0.96693 * 113.99874 * 180.02562 * 8 7 6 27 27 H 0.97001 * 120.00596 * 334.20605 * 9 6 5 28 28 H 1.07993 * 122.71669 * 180.22929 * 12 11 10 29 29 H 1.08998 * 109.47141 * 305.03238 * 14 13 12 30 30 H 0.96703 * 114.00143 * 179.97438 * 15 14 13 31 31 H 1.48493 * 110.00257 * 300.00068 * 16 14 13 32 32 H 1.48502 * 109.99923 * 61.32331 * 16 14 13 33 33 H 1.09000 * 113.61592 * 105.47717 * 18 3 2 34 34 H 1.09001 * 113.61373 * 334.65258 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 -0.3226 5 6 2.7555 1.6500 1.3023 6 6 3.8253 2.3174 0.4218 7 6 3.5481 3.7935 0.1302 8 8 4.0295 4.5917 1.2133 9 7 5.1960 2.0754 0.8788 10 6 6.2462 2.1220 -0.0246 11 7 6.1403 2.4695 -1.2696 12 6 7.2488 2.4607 -1.9883 13 6 8.3388 2.0792 -1.3219 14 6 9.7306 1.9716 -1.8897 15 8 10.1935 3.2704 -2.2651 16 14 10.8718 1.2531 -0.6044 17 16 7.8685 1.7226 0.3380 18 6 3.3756 1.3718 -0.7045 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1177 0.7745 1.8413 23 1 2.2190 2.3496 1.9432 24 1 4.0566 4.0839 -0.7892 25 1 2.4750 3.9459 0.0156 26 1 3.8867 5.5408 1.0962 27 1 5.3688 1.8827 1.8137 28 1 7.2698 2.7362 -3.0323 29 1 9.7164 1.3237 -2.7661 30 1 11.0853 3.2773 -2.6390 31 1 10.9000 2.1274 0.5956 32 1 10.4194 -0.1105 -0.2288 33 1 3.3385 1.8471 -1.6847 34 1 3.9082 0.4208 -0.7150 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341584_15704118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:40 Heat of formation + Delta-G solvation = -37.222138 kcal Electronic energy + Delta-G solvation = -19354.148020 eV Core-core repulsion = 16189.149420 eV Total energy + Delta-G solvation = -3164.998601 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.60356 -40.39275 -38.29807 -37.71288 -36.81892 -34.94716 -31.44553 -28.77905 -27.37724 -27.09797 -26.48225 -24.92178 -23.57128 -21.24125 -20.05822 -19.44404 -18.58852 -18.40996 -17.91941 -17.55989 -16.86604 -16.30442 -16.11717 -15.94885 -15.72998 -15.52305 -15.17842 -15.04939 -14.51357 -14.30448 -13.70808 -13.53957 -13.19962 -12.96603 -12.82705 -12.56790 -12.45746 -12.16325 -11.91394 -11.78384 -11.29908 -11.07772 -10.68876 -10.55731 -10.39930 -10.22558 -8.85068 -5.20504 -0.16909 -0.04776 0.53800 1.23772 1.55902 1.87413 1.92532 1.98886 2.81839 2.94073 3.19773 3.48498 3.50285 3.58737 3.64529 3.91844 3.98149 4.12766 4.34839 4.44208 4.47738 4.51834 4.54267 4.59709 4.63468 4.64522 4.79475 4.84915 4.87818 4.96902 5.05910 5.77719 5.97164 6.19702 6.74006 6.85613 6.93075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.067 3.933 4 H 0.114 0.886 5 C -0.144 4.144 6 C 0.166 3.834 7 C 0.087 3.913 8 O -0.583 6.583 9 N -0.664 5.664 10 C 0.336 3.664 11 N -0.559 5.559 12 C 0.112 3.888 13 C -0.275 4.275 14 C -0.020 4.020 15 O -0.563 6.563 16 Si 0.754 3.246 17 S 0.038 5.962 18 C -0.121 4.121 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.396 0.604 27 H 0.421 0.579 28 H 0.192 0.808 29 H 0.108 0.892 30 H 0.404 0.596 31 H -0.287 1.287 32 H -0.278 1.278 33 H 0.083 0.917 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 0.494 -1.778 1.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.009 3.991 4 H 0.131 0.869 5 C -0.182 4.182 6 C 0.077 3.923 7 C 0.008 3.992 8 O -0.391 6.391 9 N -0.303 5.303 10 C -0.035 4.035 11 N -0.286 5.286 12 C -0.038 4.038 13 C -0.397 4.397 14 C -0.134 4.134 15 O -0.373 6.373 16 Si 0.659 3.341 17 S 0.287 5.713 18 C -0.159 4.159 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.110 0.890 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.246 0.754 27 H 0.259 0.741 28 H 0.208 0.792 29 H 0.125 0.875 30 H 0.256 0.744 31 H -0.214 1.214 32 H -0.204 1.204 33 H 0.102 0.898 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.837 -0.566 0.119 1.018 hybrid contribution -0.683 0.955 -0.725 1.380 sum -1.520 0.389 -0.605 1.682 Atomic orbital electron populations 1.22997 0.79461 1.03810 1.01106 1.87931 1.21546 1.27649 1.94606 1.23671 0.93757 0.85936 0.95763 0.86852 1.23809 0.95710 1.00989 0.97698 1.21540 0.79899 0.93527 0.97298 1.22267 0.98776 0.88674 0.89468 1.86398 1.84906 1.23141 1.44644 1.43912 1.02520 1.75334 1.08538 1.23904 0.92243 0.95703 0.91603 1.66496 1.30874 1.27681 1.03504 1.21640 0.84807 0.96010 1.01384 1.24613 1.00809 1.20187 0.94079 1.23801 0.92943 0.90176 1.06442 1.86471 1.38700 1.26994 1.85176 0.94343 0.86081 0.76454 0.77220 1.84184 1.03959 1.69021 1.14169 1.23389 0.95174 0.98910 0.98453 0.92827 0.92772 0.89030 0.88795 0.88748 0.93210 0.90337 0.75419 0.74059 0.79161 0.87486 0.74381 1.21370 1.20438 0.89832 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.60 10.72 -148.98 -1.60 -3.20 16 3 C 0.07 0.01 3.97 31.18 0.12 0.14 16 4 H 0.11 -0.48 7.41 -2.39 -0.02 -0.50 16 5 C -0.14 0.03 7.22 31.18 0.23 0.25 16 6 C 0.17 0.37 0.98 4.13 0.00 0.37 16 7 C 0.09 0.08 6.42 71.98 0.46 0.54 16 8 O -0.58 -1.31 13.39 -148.98 -1.99 -3.30 16 9 N -0.66 -3.24 5.09 -308.30 -1.57 -4.81 16 10 C 0.34 2.90 7.70 179.32 1.38 4.28 16 11 N -0.56 -5.37 9.25 -202.03 -1.87 -7.24 16 12 C 0.11 0.88 11.24 83.54 0.94 1.82 16 13 C -0.27 -2.04 5.76 24.58 0.14 -1.90 16 14 C -0.02 -0.02 2.98 71.24 0.21 0.19 16 15 O -0.56 -0.36 12.86 -148.98 -1.92 -2.28 16 16 Si 0.75 0.19 31.07 68.60 2.13 2.32 16 17 S 0.04 0.34 20.59 -56.49 -1.16 -0.83 16 18 C -0.12 -0.39 6.30 31.12 0.20 -0.19 16 19 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 20 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 21 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 23 H 0.09 -0.20 8.10 -2.39 -0.02 -0.22 16 24 H 0.05 0.20 7.84 -2.39 -0.02 0.18 16 25 H 0.08 -0.32 7.37 -2.39 -0.02 -0.34 16 26 H 0.40 -2.09 9.12 -74.06 -0.68 -2.77 16 27 H 0.42 1.02 8.88 -92.71 -0.82 0.19 16 28 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 29 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.40 -4.21 8.74 -74.06 -0.65 -4.86 16 31 H -0.29 -2.34 7.11 99.48 0.71 -1.64 16 32 H -0.28 -1.62 7.11 99.48 0.71 -0.91 16 33 H 0.08 0.29 8.10 -2.39 -0.02 0.27 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 Total: 0.00 -19.15 302.89 -4.03 -23.17 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -0.96 Total: -10.53 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.92 Total: 6.68 kcal Atomic # 7 Polarization: -8.61 SS G_CDS: -3.44 Total: -12.05 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -5.51 Total: -8.78 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.13 Total: 2.32 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.16 Total: -0.83 kcal Total: -19.15 -4.03 -23.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341584_15704118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.048 kcal (2) G-P(sol) polarization free energy of solvation -19.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds