Wall clock time and date at job start Mon Mar 8 2021 07:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00392 * 2 1 4 4 H 1.09010 * 112.84543 * 341.19981 * 3 2 1 5 5 C 1.53782 * 113.69132 * 112.46171 * 3 2 1 6 6 C 1.53778 * 87.08068 * 139.99721 * 5 3 2 7 7 C 1.53005 * 113.69173 * 89.12831 * 6 5 3 8 8 O 1.42903 * 109.46744 * 76.40122 * 7 6 5 9 9 N 1.46494 * 113.61753 * 220.02345 * 6 5 3 10 10 C 1.38610 * 120.00476 * 161.46305 * 9 6 5 11 11 N 1.29681 * 124.95260 * 174.48493 * 10 9 6 12 12 C 1.32129 * 116.86720 * 180.20557 * 11 10 9 13 13 C 1.50700 * 122.70892 * 179.79520 * 12 11 10 14 14 O 1.42903 * 109.46735 * 149.70747 * 13 12 11 15 15 Si 1.86290 * 109.47372 * 29.70725 * 13 12 11 16 16 C 1.33324 * 114.57570 * 359.52114 * 12 11 10 17 17 C 1.50705 * 125.94904 * 180.26687 * 16 12 11 18 18 S 1.70971 * 124.94538 * 354.19875 * 10 9 6 19 19 C 1.53782 * 113.61993 * 210.00445 * 3 2 1 20 20 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47015 * 299.99815 * 1 2 3 22 22 H 1.09000 * 109.47349 * 59.99713 * 1 2 3 23 23 H 1.08999 * 113.61365 * 25.45356 * 5 3 2 24 24 H 1.08995 * 113.61749 * 254.54837 * 5 3 2 25 25 H 1.08996 * 109.47022 * 196.39950 * 7 6 5 26 26 H 1.09000 * 109.46958 * 316.40310 * 7 6 5 27 27 H 0.96703 * 113.99715 * 179.97438 * 8 7 6 28 28 H 0.97004 * 119.99784 * 341.46073 * 9 6 5 29 29 H 1.09004 * 109.46702 * 269.70268 * 13 12 11 30 30 H 0.96698 * 114.00170 * 300.00073 * 14 13 12 31 31 H 1.48504 * 110.00167 * 58.68168 * 15 13 12 32 32 H 1.48502 * 110.00185 * 179.97438 * 15 13 12 33 33 H 1.08999 * 109.46993 * 90.00632 * 17 16 12 34 34 H 1.09003 * 109.46644 * 210.00624 * 17 16 12 35 35 H 1.08991 * 109.47017 * 330.00296 * 17 16 12 36 36 H 1.08994 * 113.61254 * 105.38672 * 19 3 2 37 37 H 1.08995 * 113.68348 * 334.49138 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7531 1.6510 1.3014 6 6 3.8220 2.3199 0.4211 7 6 3.5415 3.7950 0.1273 8 8 3.8581 4.5787 1.2796 9 7 5.1929 2.0818 0.8795 10 6 6.2571 2.2766 0.0130 11 7 7.5085 2.1940 0.3430 12 6 8.3939 2.4146 -0.6126 13 6 9.8808 2.3572 -0.3742 14 8 10.5391 1.9364 -1.5707 15 14 10.2442 1.1456 0.9934 16 6 7.8655 2.6865 -1.8060 17 6 8.6349 2.9717 -3.0701 18 16 6.1112 2.6540 -1.6481 19 6 3.3756 1.3720 -0.7046 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 3.1170 0.7771 1.8417 24 1 2.2133 2.3502 1.9399 25 1 4.1541 4.1210 -0.7133 26 1 2.4876 3.9222 -0.1202 27 1 3.7046 5.5266 1.1649 28 1 5.3558 1.7879 1.7894 29 1 10.2415 3.3456 -0.0894 30 1 10.2663 1.0630 -1.8834 31 1 9.7289 -0.1992 0.6309 32 1 11.7074 1.0793 1.2378 33 1 8.8181 2.0382 -3.6023 34 1 8.0562 3.6437 -3.7039 35 1 9.5866 3.4393 -2.8184 36 1 3.3381 1.8459 -1.6854 37 1 3.9104 0.4223 -0.7134 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18341584_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:43 Heat of formation + Delta-G solvation = -40.287489 kcal Electronic energy + Delta-G solvation = -21396.282555 eV Core-core repulsion = 18075.613412 eV Total energy + Delta-G solvation = -3320.669143 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53941 -40.89144 -38.37805 -37.79883 -36.79113 -34.93232 -32.48259 -29.44599 -28.49276 -27.39839 -26.95307 -25.70260 -24.74553 -23.32707 -20.80050 -20.36667 -19.01648 -18.45765 -18.18319 -17.75907 -17.31410 -16.84776 -16.71170 -16.12322 -15.90586 -15.79453 -15.68737 -15.09475 -14.86915 -14.32461 -13.97707 -13.83680 -13.71738 -13.54359 -13.44828 -13.17602 -12.89198 -12.75231 -12.50894 -12.39888 -11.98033 -11.87524 -11.78486 -11.17914 -10.99051 -10.66193 -10.53239 -10.47130 -10.01792 -8.63116 -4.80262 -0.02980 0.14988 0.73208 1.28534 1.64400 1.77785 1.87876 1.98399 2.77897 2.90435 3.19114 3.28326 3.48360 3.51317 3.58733 3.94569 4.06299 4.16390 4.32127 4.34687 4.39073 4.49686 4.53626 4.55116 4.56577 4.63798 4.77744 4.80838 4.83833 4.88708 4.90886 4.96691 5.10326 5.29933 5.66065 6.22725 6.26918 6.40885 6.78894 6.92416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.070 3.930 4 H 0.118 0.882 5 C -0.139 4.139 6 C 0.150 3.850 7 C 0.077 3.923 8 O -0.579 6.579 9 N -0.667 5.667 10 C 0.317 3.683 11 N -0.562 5.562 12 C 0.056 3.944 13 C -0.039 4.039 14 O -0.531 6.531 15 Si 0.776 3.224 16 C -0.261 4.261 17 C -0.061 4.061 18 S 0.121 5.879 19 C -0.144 4.144 20 H 0.089 0.911 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.399 0.601 28 H 0.415 0.585 29 H 0.133 0.867 30 H 0.384 0.616 31 H -0.307 1.307 32 H -0.289 1.289 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 2.956 -1.329 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.012 3.988 4 H 0.136 0.864 5 C -0.177 4.177 6 C 0.063 3.937 7 C -0.003 4.003 8 O -0.387 6.387 9 N -0.306 5.306 10 C -0.054 4.054 11 N -0.290 5.290 12 C -0.074 4.074 13 C -0.152 4.152 14 O -0.338 6.338 15 Si 0.682 3.318 16 C -0.384 4.384 17 C -0.121 4.121 18 S 0.371 5.629 19 C -0.183 4.183 20 H 0.108 0.892 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.249 0.751 28 H 0.254 0.746 29 H 0.150 0.850 30 H 0.233 0.767 31 H -0.235 1.235 32 H -0.217 1.217 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.900 2.110 -0.991 7.283 hybrid contribution 0.623 -0.071 -0.612 0.876 sum -6.277 2.039 -1.603 6.792 Atomic orbital electron populations 1.22994 0.79468 1.03760 1.01160 1.87937 1.21495 1.27651 1.94580 1.23599 0.93608 0.86096 0.95514 0.86448 1.23684 0.95374 1.00874 0.97796 1.21756 0.79966 0.93950 0.98064 1.22390 1.00913 0.88632 0.88322 1.86453 1.90466 1.23987 1.37842 1.43819 1.01025 1.72317 1.13449 1.23446 0.89809 0.97855 0.94300 1.65736 0.99009 1.29001 1.35216 1.20230 0.97049 1.01756 0.88413 1.24438 0.86151 1.09099 0.95508 1.86578 1.66309 1.39743 1.41176 0.92882 0.76609 0.75690 0.86633 1.25434 0.95247 1.16294 1.01402 1.20197 0.98894 1.02252 0.90711 1.83676 1.05184 1.70687 1.03385 1.23714 0.96252 0.99782 0.98538 0.89219 0.92893 0.92570 0.88803 0.88757 0.92810 0.89364 0.75118 0.74586 0.84998 0.76651 1.23457 1.21671 0.90569 0.91525 0.89565 0.88599 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 10.85 113.37 1.23 1.13 16 2 O -0.40 -0.35 10.72 -148.98 -1.60 -1.95 16 3 C 0.07 -0.27 3.96 31.12 0.12 -0.15 16 4 H 0.12 -1.02 7.34 -2.38 -0.02 -1.04 16 5 C -0.14 0.45 7.22 31.12 0.22 0.68 16 6 C 0.15 -0.36 0.81 4.13 0.00 -0.36 16 7 C 0.08 -0.36 6.22 71.98 0.45 0.09 16 8 O -0.58 1.23 13.53 -148.98 -2.02 -0.79 16 9 N -0.67 -1.24 5.26 -308.32 -1.62 -2.86 16 10 C 0.32 1.67 7.91 179.32 1.42 3.09 16 11 N -0.56 -4.48 8.94 -189.86 -1.70 -6.18 16 12 C 0.06 0.37 5.92 41.40 0.25 0.61 16 13 C -0.04 -0.17 2.82 71.24 0.20 0.04 16 14 O -0.53 -1.87 9.90 -148.98 -1.47 -3.35 16 15 Si 0.78 4.07 32.08 68.60 2.20 6.27 16 16 C -0.26 -1.23 6.50 24.58 0.16 -1.07 16 17 C -0.06 -0.06 8.95 71.24 0.64 0.57 16 18 S 0.12 0.28 19.51 -56.49 -1.10 -0.83 16 19 C -0.14 0.37 5.88 31.12 0.18 0.56 16 20 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 21 H 0.05 -0.33 8.14 -2.38 -0.02 -0.34 16 22 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.09 -0.42 8.10 -2.39 -0.02 -0.44 16 25 H 0.05 -0.22 6.54 -2.39 -0.02 -0.23 16 26 H 0.09 -0.85 7.32 -2.39 -0.02 -0.87 16 27 H 0.40 -3.88 9.12 -74.05 -0.68 -4.56 16 28 H 0.42 0.71 8.83 -92.71 -0.82 -0.11 16 29 H 0.13 0.30 7.96 -2.39 -0.02 0.29 16 30 H 0.38 -0.32 8.68 -74.06 -0.64 -0.96 16 31 H -0.31 -3.60 7.11 99.48 0.71 -2.89 16 32 H -0.29 -2.80 7.11 99.48 0.71 -2.09 16 33 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.09 0.19 6.61 -2.39 -0.02 0.18 16 36 H 0.10 -0.48 7.87 -2.39 -0.02 -0.50 16 37 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 Total: 0.00 -15.69 316.55 -3.42 -19.11 By element: Atomic # 1 Polarization: -13.63 SS G_CDS: -0.98 Total: -14.61 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.87 Total: 5.19 kcal Atomic # 7 Polarization: -5.72 SS G_CDS: -3.32 Total: -9.04 kcal Atomic # 8 Polarization: -1.00 SS G_CDS: -5.09 Total: -6.09 kcal Atomic # 14 Polarization: 4.07 SS G_CDS: 2.20 Total: 6.27 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.10 Total: -0.83 kcal Total: -15.69 -3.42 -19.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18341584_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.180 kcal (2) G-P(sol) polarization free energy of solvation -15.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds