Wall clock time and date at job start Mon Mar 8 2021 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 102.99916 * 2 1 4 4 H 1.08999 * 112.84908 * 43.80403 * 3 2 1 5 5 C 1.53782 * 113.61154 * 175.00090 * 3 2 1 6 6 C 1.53786 * 87.08018 * 139.97913 * 5 3 2 7 7 H 1.09000 * 113.61354 * 89.19909 * 6 5 3 8 8 C 1.53001 * 113.61532 * 220.01406 * 6 5 3 9 9 N 1.46498 * 109.47054 * 184.99773 * 8 6 5 10 10 C 1.38404 * 119.99495 * 180.02562 * 9 8 6 11 11 N 1.32494 * 119.21305 * 180.02562 * 10 9 8 12 12 C 1.32279 * 120.73962 * 180.02562 * 11 10 9 13 13 C 1.38606 * 119.19623 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.71735 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.47186 * 65.00296 * 14 13 12 16 16 Si 1.86302 * 109.46768 * 184.99976 * 14 13 12 17 17 C 1.38603 * 118.55868 * 0.25228 * 13 12 11 18 18 N 1.32276 * 119.19531 * 359.51469 * 17 13 12 19 19 C 1.53776 * 87.08114 * 334.56657 * 6 5 3 20 20 H 1.08998 * 109.46944 * 59.99926 * 1 2 3 21 21 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47394 * 300.00180 * 1 2 3 23 23 H 1.08994 * 113.61996 * 25.42907 * 5 3 2 24 24 H 1.09000 * 113.61002 * 254.52399 * 5 3 2 25 25 H 1.09004 * 109.46830 * 64.99833 * 8 6 5 26 26 H 1.09000 * 109.46959 * 305.00117 * 8 6 5 27 27 H 0.96996 * 119.99953 * 0.02562 * 9 8 6 28 28 H 1.08006 * 120.40235 * 180.02562 * 12 11 10 29 29 H 1.08992 * 109.47155 * 304.99893 * 14 13 12 30 30 H 0.96698 * 113.99763 * 59.99746 * 15 14 13 31 31 H 1.48503 * 109.99841 * 58.68268 * 16 14 13 32 32 H 1.48504 * 109.99775 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.39896 * 179.72136 * 17 13 12 34 34 H 1.08999 * 113.61464 * 139.98200 * 19 6 5 35 35 H 1.08997 * 113.61426 * 270.88457 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0519 0.1228 6 6 3.5206 3.1737 -0.9084 7 1 3.2658 4.1351 -0.4624 8 6 4.6479 3.2766 -1.9377 9 7 4.4202 4.4412 -2.7967 10 6 5.3150 4.7395 -3.8096 11 7 5.0941 5.7968 -4.5769 12 6 5.9293 6.1095 -5.5539 13 6 7.0454 5.3163 -5.7691 14 6 8.0191 5.6406 -6.8727 15 8 8.6548 6.8900 -6.5953 16 14 9.3069 4.2986 -6.9787 17 6 7.2435 4.2152 -4.9510 18 7 6.3720 3.9611 -3.9888 19 6 2.3008 2.3815 -1.4077 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.3572 1.2382 -0.2380 24 1 4.0255 2.4134 1.1072 25 1 4.6665 2.3733 -2.5476 26 1 5.6019 3.3864 -1.4220 27 1 3.6423 5.0032 -2.6556 28 1 5.7442 6.9729 -6.1759 29 1 7.4850 5.7072 -7.8205 30 1 9.1500 6.9034 -5.7648 31 1 8.6557 2.9888 -7.2354 32 1 10.2736 4.6068 -8.0631 33 1 8.1007 3.5743 -5.0952 34 1 1.4457 3.0090 -1.6589 35 1 2.5395 1.6578 -2.1870 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18360572_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:22 Heat of formation + Delta-G solvation = 53.534971 kcal Electronic energy + Delta-G solvation = -17608.451057 eV Core-core repulsion = 14735.562693 eV Total energy + Delta-G solvation = -2872.888364 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05153 -40.25670 -38.14313 -36.47976 -34.67406 -32.67382 -30.00938 -29.29202 -26.89451 -26.35772 -25.86366 -23.96334 -22.99015 -20.87976 -19.34486 -18.68154 -18.11064 -17.46570 -16.88504 -16.58500 -16.16594 -15.97272 -15.77689 -15.50597 -15.15086 -14.95334 -14.55264 -14.40428 -14.11952 -14.05962 -13.62524 -13.58666 -13.15312 -13.04321 -12.21787 -12.01605 -11.85391 -11.80548 -11.73547 -11.63225 -11.21864 -10.84173 -10.57518 -9.99982 -9.08821 -8.66510 -5.10377 0.08795 0.18487 0.70914 1.23274 1.56058 1.57408 1.81895 1.93320 2.85688 3.14027 3.26521 3.31560 3.41983 3.49091 3.63058 3.64580 3.72787 3.84707 4.03642 4.15982 4.18610 4.21083 4.23329 4.50433 4.53351 4.60236 4.63892 4.71552 4.74213 4.74864 4.82738 4.93270 5.18339 5.27259 5.77827 6.01866 6.41307 6.52124 7.31369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.098 4.098 6 C -0.122 4.122 7 H 0.101 0.899 8 C 0.148 3.852 9 N -0.694 5.694 10 C 0.567 3.433 11 N -0.570 5.570 12 C 0.223 3.777 13 C -0.296 4.296 14 C -0.046 4.046 15 O -0.541 6.541 16 Si 0.680 3.320 17 C 0.201 3.799 18 N -0.562 5.562 19 C -0.123 4.123 20 H 0.077 0.923 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.415 0.585 28 H 0.170 0.830 29 H 0.115 0.885 30 H 0.379 0.621 31 H -0.255 1.255 32 H -0.251 1.251 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 0.337 2.331 2.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.137 4.137 6 C -0.143 4.143 7 H 0.119 0.881 8 C 0.024 3.976 9 N -0.331 5.331 10 C 0.210 3.790 11 N -0.292 5.292 12 C 0.055 3.945 13 C -0.304 4.304 14 C -0.158 4.158 15 O -0.346 6.346 16 Si 0.581 3.419 17 C 0.033 3.967 18 N -0.284 5.284 19 C -0.163 4.163 20 H 0.096 0.904 21 H 0.119 0.881 22 H 0.095 0.905 23 H 0.115 0.885 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.252 0.748 28 H 0.187 0.813 29 H 0.133 0.867 30 H 0.226 0.774 31 H -0.180 1.180 32 H -0.175 1.175 33 H 0.183 0.817 34 H 0.091 0.909 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.250 -1.456 2.189 2.641 hybrid contribution -1.286 1.648 -0.744 2.219 sum -1.037 0.193 1.445 1.789 Atomic orbital electron populations 1.23371 0.94125 1.06626 1.04948 1.86966 1.07583 1.10378 1.97633 1.24680 1.01087 0.94291 1.01209 0.87605 1.22750 0.93344 0.97814 0.99819 1.22776 0.95753 0.99015 0.96742 0.88065 1.21349 0.97982 0.87636 0.90662 1.44154 1.25937 1.31235 1.31767 1.19391 0.86654 0.85781 0.87175 1.67986 1.33307 1.18820 1.09073 1.22833 0.86377 0.95492 0.89807 1.21704 1.02477 1.01621 1.04603 1.24696 0.98702 0.95166 0.97242 1.86510 1.69844 1.32955 1.45273 0.95002 0.81305 0.76550 0.89009 1.22761 0.94846 0.92167 0.86928 1.67919 1.05138 1.32185 1.23197 1.23412 0.98181 0.99097 0.95581 0.90434 0.88065 0.90483 0.88537 0.89834 0.90924 0.90925 0.74797 0.81318 0.86743 0.77372 1.17974 1.17526 0.81698 0.90863 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.22 16 2 S -0.25 -0.23 22.17 -107.50 -2.38 -2.61 16 3 C -0.08 0.11 4.28 -25.92 -0.11 0.00 16 4 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 5 C -0.10 0.20 7.23 -25.92 -0.19 0.01 16 6 C -0.12 0.32 3.75 -89.81 -0.34 -0.01 16 7 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 8 C 0.15 -0.17 5.48 -4.04 -0.02 -0.19 16 9 N -0.69 -0.13 5.70 -62.31 -0.36 -0.49 16 10 C 0.57 1.41 8.42 -322.81 -2.72 -1.31 16 11 N -0.57 -1.60 10.46 -13.93 -0.15 -1.75 16 12 C 0.22 0.25 10.99 -17.22 -0.19 0.06 16 13 C -0.30 0.01 5.36 -104.35 -0.56 -0.55 16 14 C -0.05 0.05 2.83 36.01 0.10 0.15 16 15 O -0.54 0.37 12.85 -35.23 -0.45 -0.09 16 16 Si 0.68 -1.26 29.88 -169.99 -5.08 -6.34 16 17 C 0.20 0.06 9.92 -17.23 -0.17 -0.11 16 18 N -0.56 -1.28 9.59 -13.93 -0.13 -1.41 16 19 C -0.12 0.24 7.22 -25.92 -0.19 0.05 16 20 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 21 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 22 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 23 H 0.10 -0.14 8.06 -51.93 -0.42 -0.55 16 24 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 25 H 0.07 -0.01 7.84 -51.93 -0.41 -0.42 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.41 -0.39 8.59 -40.82 -0.35 -0.74 16 28 H 0.17 -0.11 8.06 -52.48 -0.42 -0.53 16 29 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 31 H -0.25 -0.15 7.11 56.52 0.40 0.26 16 32 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 33 H 0.17 -0.39 5.06 -52.49 -0.27 -0.66 16 34 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.10 -0.08 7.85 -51.93 -0.41 -0.49 16 LS Contribution 308.38 15.07 4.65 4.65 Total: 0.00 -6.24 308.38 -12.07 -18.31 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: -4.87 Total: -9.60 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.30 Total: -0.67 kcal Atomic # 7 Polarization: -3.01 SS G_CDS: -0.63 Total: -3.65 kcal Atomic # 8 Polarization: 0.37 SS G_CDS: -0.45 Total: -0.09 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: -5.08 Total: -6.34 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.38 Total: -2.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -6.24 -12.07 -18.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.841 kcal (2) G-P(sol) polarization free energy of solvation -6.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds