Wall clock time and date at job start Mon Mar 8 2021 08:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 102.99916 * 2 1 4 4 H 1.08999 * 112.84908 * 43.80403 * 3 2 1 5 5 C 1.53782 * 113.61154 * 175.00090 * 3 2 1 6 6 C 1.53786 * 87.08018 * 139.97913 * 5 3 2 7 7 H 1.09000 * 113.61354 * 89.19909 * 6 5 3 8 8 C 1.53001 * 113.61532 * 220.01406 * 6 5 3 9 9 N 1.46498 * 109.47054 * 184.99773 * 8 6 5 10 10 C 1.38404 * 119.99495 * 180.02562 * 9 8 6 11 11 N 1.32494 * 119.21305 * 180.02562 * 10 9 8 12 12 C 1.32279 * 120.73962 * 180.02562 * 11 10 9 13 13 C 1.38606 * 119.19623 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.71735 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.47186 * 65.00296 * 14 13 12 16 16 Si 1.86302 * 109.46768 * 184.99976 * 14 13 12 17 17 C 1.38603 * 118.55868 * 0.25228 * 13 12 11 18 18 N 1.32276 * 119.19531 * 359.51469 * 17 13 12 19 19 C 1.53776 * 87.08114 * 334.56657 * 6 5 3 20 20 H 1.08998 * 109.46944 * 59.99926 * 1 2 3 21 21 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47394 * 300.00180 * 1 2 3 23 23 H 1.08994 * 113.61996 * 25.42907 * 5 3 2 24 24 H 1.09000 * 113.61002 * 254.52399 * 5 3 2 25 25 H 1.09004 * 109.46830 * 64.99833 * 8 6 5 26 26 H 1.09000 * 109.46959 * 305.00117 * 8 6 5 27 27 H 0.96996 * 119.99953 * 0.02562 * 9 8 6 28 28 H 1.08006 * 120.40235 * 180.02562 * 12 11 10 29 29 H 1.08992 * 109.47155 * 304.99893 * 14 13 12 30 30 H 0.96698 * 113.99763 * 59.99746 * 15 14 13 31 31 H 1.48503 * 109.99841 * 58.68268 * 16 14 13 32 32 H 1.48504 * 109.99775 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.39896 * 179.72136 * 17 13 12 34 34 H 1.08999 * 113.61464 * 139.98200 * 19 6 5 35 35 H 1.08997 * 113.61426 * 270.88457 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0519 0.1228 6 6 3.5206 3.1737 -0.9084 7 1 3.2658 4.1351 -0.4624 8 6 4.6479 3.2766 -1.9377 9 7 4.4202 4.4412 -2.7967 10 6 5.3150 4.7395 -3.8096 11 7 5.0941 5.7968 -4.5769 12 6 5.9293 6.1095 -5.5539 13 6 7.0454 5.3163 -5.7691 14 6 8.0191 5.6406 -6.8727 15 8 8.6548 6.8900 -6.5953 16 14 9.3069 4.2986 -6.9787 17 6 7.2435 4.2152 -4.9510 18 7 6.3720 3.9611 -3.9888 19 6 2.3008 2.3815 -1.4077 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.3572 1.2382 -0.2380 24 1 4.0255 2.4134 1.1072 25 1 4.6665 2.3733 -2.5476 26 1 5.6019 3.3864 -1.4220 27 1 3.6423 5.0032 -2.6556 28 1 5.7442 6.9729 -6.1759 29 1 7.4850 5.7072 -7.8205 30 1 9.1500 6.9034 -5.7648 31 1 8.6557 2.9888 -7.2354 32 1 10.2736 4.6068 -8.0631 33 1 8.1007 3.5743 -5.0952 34 1 1.4457 3.0090 -1.6589 35 1 2.5395 1.6578 -2.1870 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18360572_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:21 Heat of formation + Delta-G solvation = 57.915122 kcal Electronic energy + Delta-G solvation = -17608.261119 eV Core-core repulsion = 14735.562693 eV Total energy + Delta-G solvation = -2872.698426 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09406 -40.14401 -38.08897 -36.45392 -34.74357 -32.67119 -29.92503 -29.23410 -26.76264 -26.31812 -25.89235 -23.90511 -22.99974 -20.76101 -19.34271 -18.70174 -18.05980 -17.45203 -16.80100 -16.55073 -16.14387 -15.96476 -15.72147 -15.49345 -15.10108 -14.90284 -14.55634 -14.32004 -14.08374 -14.02122 -13.50981 -13.48420 -13.13477 -12.94340 -12.26066 -11.92983 -11.89075 -11.78628 -11.67860 -11.55937 -11.16140 -10.80539 -10.54093 -10.05056 -9.10357 -8.71823 -4.98923 0.04871 0.13184 0.76502 1.32805 1.62430 1.65172 1.83243 1.99529 2.79389 3.15190 3.37607 3.44588 3.55560 3.61444 3.68116 3.72850 3.77629 3.87555 4.16121 4.24444 4.28114 4.29594 4.36939 4.56795 4.64209 4.73600 4.75239 4.76369 4.82296 4.84103 4.95381 5.05324 5.21879 5.39565 5.74707 6.03298 6.39498 6.79424 7.26568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.314 6.314 3 C -0.074 4.074 4 H 0.116 0.884 5 C -0.097 4.097 6 C -0.107 4.107 7 H 0.116 0.884 8 C 0.154 3.846 9 N -0.690 5.690 10 C 0.550 3.450 11 N -0.591 5.591 12 C 0.212 3.788 13 C -0.289 4.289 14 C -0.047 4.047 15 O -0.554 6.554 16 Si 0.767 3.233 17 C 0.195 3.805 18 N -0.579 5.579 19 C -0.120 4.120 20 H 0.083 0.917 21 H 0.103 0.897 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.419 0.581 28 H 0.182 0.818 29 H 0.113 0.887 30 H 0.395 0.605 31 H -0.285 1.285 32 H -0.296 1.296 33 H 0.189 0.811 34 H 0.080 0.920 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 0.949 2.717 2.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.085 6.085 3 C -0.202 4.202 4 H 0.134 0.866 5 C -0.137 4.137 6 C -0.127 4.127 7 H 0.134 0.866 8 C 0.030 3.970 9 N -0.327 5.327 10 C 0.193 3.807 11 N -0.313 5.313 12 C 0.044 3.956 13 C -0.297 4.297 14 C -0.158 4.158 15 O -0.362 6.362 16 Si 0.673 3.327 17 C 0.028 3.972 18 N -0.302 5.302 19 C -0.159 4.159 20 H 0.102 0.898 21 H 0.121 0.879 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.257 0.743 28 H 0.199 0.801 29 H 0.131 0.869 30 H 0.245 0.755 31 H -0.212 1.212 32 H -0.223 1.223 33 H 0.205 0.795 34 H 0.099 0.901 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.242 -0.826 2.603 2.742 hybrid contribution -1.266 1.467 -0.916 2.143 sum -1.023 0.641 1.687 2.074 Atomic orbital electron populations 1.23370 0.91951 1.07033 1.05633 1.87155 1.10203 1.13414 1.97773 1.24742 1.01537 0.92180 1.01744 0.86617 1.22757 0.92816 0.97684 1.00396 1.22680 0.94724 0.99368 0.95970 0.86625 1.21296 0.98429 0.86754 0.90510 1.44224 1.25705 1.31405 1.31336 1.19671 0.87226 0.86031 0.87766 1.68002 1.34132 1.19329 1.09857 1.23149 0.86608 0.96104 0.89710 1.21767 1.02206 1.01176 1.04545 1.24793 0.98760 0.95510 0.96755 1.86479 1.70112 1.33051 1.46550 0.93965 0.78055 0.73646 0.86989 1.23180 0.95115 0.92480 0.86407 1.67962 1.05585 1.32547 1.24090 1.23348 0.98749 0.98887 0.94958 0.89834 0.87859 0.89640 0.89425 0.88916 0.92115 0.91255 0.74282 0.80113 0.86918 0.75538 1.21191 1.22314 0.79484 0.90092 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.24 10.76 113.37 1.22 1.46 16 2 S -0.31 -0.79 22.17 -56.49 -1.25 -2.05 16 3 C -0.07 0.21 4.28 31.12 0.13 0.34 16 4 H 0.12 -0.54 8.14 -2.39 -0.02 -0.55 16 5 C -0.10 0.40 7.23 31.12 0.23 0.63 16 6 C -0.11 0.60 3.75 -10.27 -0.04 0.56 16 7 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 8 C 0.15 -0.30 5.48 86.38 0.47 0.18 16 9 N -0.69 -0.47 5.70 -351.04 -2.00 -2.47 16 10 C 0.55 2.99 8.42 261.49 2.20 5.20 16 11 N -0.59 -3.57 10.46 -197.98 -2.07 -5.64 16 12 C 0.21 0.51 10.99 84.71 0.93 1.44 16 13 C -0.29 0.08 5.36 -19.69 -0.11 -0.02 16 14 C -0.05 0.13 2.83 71.24 0.20 0.33 16 15 O -0.55 1.14 12.85 -148.98 -1.91 -0.77 16 16 Si 0.77 -3.07 29.88 68.60 2.05 -1.02 16 17 C 0.20 0.08 9.92 84.71 0.84 0.92 16 18 N -0.58 -2.81 9.59 -197.99 -1.90 -4.70 16 19 C -0.12 0.46 7.22 31.12 0.22 0.69 16 20 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 21 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 23 H 0.09 -0.18 8.06 -2.39 -0.02 -0.20 16 24 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.06 0.04 7.84 -2.38 -0.02 0.02 16 26 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.42 -0.76 8.59 -92.71 -0.80 -1.56 16 28 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16 29 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.39 -3.79 8.70 -74.06 -0.64 -4.43 16 31 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 32 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 33 H 0.19 -1.02 5.06 -2.91 -0.01 -1.04 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 -0.07 7.85 -2.39 -0.02 -0.09 16 Total: 0.00 -15.16 308.38 -1.08 -16.24 By element: Atomic # 1 Polarization: -11.01 SS G_CDS: -0.30 Total: -11.31 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.31 Total: 11.72 kcal Atomic # 7 Polarization: -6.84 SS G_CDS: -5.97 Total: -12.81 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: -1.91 Total: -0.77 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.05 Total: -1.02 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.25 Total: -2.05 kcal Total: -15.16 -1.08 -16.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.151 kcal (2) G-P(sol) polarization free energy of solvation -15.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds