Wall clock time and date at job start Mon Mar 8 2021 08:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99369 * 2 1 4 4 H 1.08993 * 112.85348 * 43.81040 * 3 2 1 5 5 C 1.53783 * 113.61001 * 175.00239 * 3 2 1 6 6 C 1.53781 * 87.08320 * 140.06347 * 5 3 2 7 7 H 1.08998 * 113.61123 * 89.19565 * 6 5 3 8 8 C 1.52998 * 113.62014 * 220.01952 * 6 5 3 9 9 N 1.46495 * 109.47489 * 185.00329 * 8 6 5 10 10 C 1.39002 * 119.99872 * 180.02562 * 9 8 6 11 11 N 1.32406 * 119.69919 * 179.97438 * 10 9 8 12 12 C 1.31979 * 121.61534 * 179.97438 * 11 10 9 13 13 C 1.38017 * 120.85886 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.33494 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.46937 * 120.00288 * 14 13 12 16 16 Si 1.86301 * 109.47149 * 0.02562 * 14 13 12 17 17 C 1.38886 * 119.32826 * 0.25509 * 13 12 11 18 18 C 1.38296 * 118.50998 * 359.50218 * 17 13 12 19 19 C 1.53782 * 113.69143 * 272.53468 * 3 2 1 20 20 H 1.09001 * 109.46773 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47320 * 299.99352 * 1 2 3 22 22 H 1.09001 * 109.47425 * 60.00201 * 1 2 3 23 23 H 1.09002 * 113.61763 * 25.51770 * 5 3 2 24 24 H 1.08996 * 113.61663 * 254.61165 * 5 3 2 25 25 H 1.08997 * 109.47067 * 64.99281 * 8 6 5 26 26 H 1.09010 * 109.46823 * 305.00243 * 8 6 5 27 27 H 0.97001 * 119.99960 * 359.97438 * 9 8 6 28 28 H 1.08001 * 119.56816 * 180.02562 * 12 11 10 29 29 H 1.09001 * 109.46927 * 240.00032 * 14 13 12 30 30 H 0.96702 * 113.99404 * 180.02562 * 15 14 13 31 31 H 1.48503 * 109.99816 * 59.99603 * 16 14 13 32 32 H 1.48501 * 109.99942 * 181.31689 * 16 14 13 33 33 H 1.08011 * 120.74554 * 179.74979 * 17 13 12 34 34 H 1.07995 * 120.45283 * 180.22077 * 18 17 13 35 35 H 1.08998 * 113.61149 * 105.46432 * 19 3 2 36 36 H 1.09005 * 113.61434 * 334.55899 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.6108 2.3430 0.6953 5 6 3.7282 2.0521 0.1228 6 6 3.5200 3.1753 -0.9067 7 1 3.2651 4.1360 -0.4592 8 6 4.6469 3.2798 -1.9363 9 7 4.4188 4.4458 -2.7934 10 6 5.3171 4.7470 -3.8105 11 7 5.1049 5.8019 -4.5820 12 6 5.9331 6.1231 -5.5581 13 6 7.0584 5.3646 -5.8100 14 6 7.9959 5.7418 -6.9280 15 8 9.2962 5.9975 -6.3934 16 14 7.3628 7.2733 -7.7793 17 6 7.3148 4.2469 -5.0265 18 6 6.4319 3.9382 -4.0078 19 6 2.3002 2.3837 -1.4068 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 4.3572 1.2389 -0.2395 24 1 4.0257 2.4121 1.1076 25 1 4.6655 2.3775 -2.5474 26 1 5.6011 3.3890 -1.4207 27 1 3.6406 5.0071 -2.6516 28 1 5.7281 6.9911 -6.1671 29 1 8.0527 4.9237 -7.6461 30 1 9.9527 6.2469 -7.0582 31 1 7.2811 8.3958 -6.8105 32 1 8.2615 7.6374 -8.9040 33 1 8.1864 3.6348 -5.2062 34 1 6.6028 3.0783 -3.3772 35 1 1.4448 3.0113 -1.6568 36 1 2.5387 1.6611 -2.1873 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18360572_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:25 Heat of formation + Delta-G solvation = 37.680750 kcal Electronic energy + Delta-G solvation = -17442.404747 eV Core-core repulsion = 14634.254804 eV Total energy + Delta-G solvation = -2808.149943 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32181 -40.20805 -38.01873 -36.39772 -33.43524 -31.86911 -29.98902 -29.10921 -26.89581 -26.04729 -24.91726 -23.81353 -22.19402 -20.83128 -18.70608 -18.44945 -18.12658 -17.33032 -16.86186 -16.53451 -15.87248 -15.82966 -15.61074 -15.22483 -14.96756 -14.75519 -14.35698 -14.17959 -13.97804 -13.90247 -13.82273 -13.64103 -13.48300 -13.03810 -12.34101 -12.02139 -11.91753 -11.80990 -11.57106 -11.09519 -10.85801 -10.64768 -10.52418 -10.24989 -8.68039 -8.63795 -4.94373 0.33067 0.51002 0.69884 1.31978 1.54852 1.61364 1.98672 2.10159 2.88229 3.25376 3.29640 3.42208 3.47654 3.59991 3.68399 3.88274 3.98175 4.08489 4.15580 4.17551 4.18084 4.18913 4.38543 4.47140 4.47777 4.57910 4.58775 4.63639 4.73002 4.79694 4.81769 4.89614 5.09619 5.20463 5.36056 5.57839 6.04181 6.46960 6.57959 7.22990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.255 6.255 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.100 4.100 6 C -0.119 4.119 7 H 0.102 0.898 8 C 0.139 3.861 9 N -0.722 5.722 10 C 0.407 3.593 11 N -0.539 5.539 12 C 0.159 3.841 13 C -0.189 4.189 14 C -0.060 4.060 15 O -0.538 6.538 16 Si 0.675 3.325 17 C -0.004 4.004 18 C -0.238 4.238 19 C -0.122 4.122 20 H 0.101 0.899 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.406 0.594 28 H 0.155 0.845 29 H 0.074 0.926 30 H 0.379 0.621 31 H -0.253 1.253 32 H -0.260 1.260 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -1.303 -0.748 2.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.026 6.026 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.139 4.139 6 C -0.140 4.140 7 H 0.120 0.880 8 C 0.014 3.986 9 N -0.355 5.355 10 C 0.171 3.829 11 N -0.256 5.256 12 C 0.001 3.999 13 C -0.194 4.194 14 C -0.170 4.170 15 O -0.345 6.345 16 Si 0.576 3.424 17 C -0.030 4.030 18 C -0.263 4.263 19 C -0.162 4.162 20 H 0.119 0.881 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.241 0.759 28 H 0.172 0.828 29 H 0.092 0.908 30 H 0.226 0.774 31 H -0.178 1.178 32 H -0.185 1.185 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.130 -1.215 -0.100 2.454 hybrid contribution 0.758 0.601 0.024 0.968 sum -1.371 -0.614 -0.076 1.505 Atomic orbital electron populations 1.23374 0.94044 1.06643 1.04983 1.86949 1.07684 1.10344 1.97637 1.24677 1.01009 0.94306 1.01288 0.87614 1.22766 0.93433 0.97797 0.99914 1.22720 0.95665 0.99028 0.96559 0.87998 1.21418 0.98200 0.87944 0.91043 1.44461 1.27101 1.30959 1.32977 1.18381 0.87933 0.89234 0.87376 1.67166 1.32682 1.17798 1.07951 1.22129 0.89190 0.96558 0.92018 1.19907 0.98423 0.99298 1.01818 1.24523 0.85536 1.08923 0.98054 1.86594 1.19176 1.90729 1.38035 0.95239 0.89797 0.77482 0.79850 1.21165 0.96622 0.94074 0.91152 1.21431 0.97314 1.03988 1.03588 1.23404 0.98210 0.99024 0.95521 0.88052 0.90480 0.90382 0.88630 0.89862 0.91314 0.91469 0.75861 0.82818 0.90776 0.77353 1.17778 1.18510 0.84785 0.84918 0.90781 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.24 16 2 S -0.25 -0.16 22.18 -107.50 -2.38 -2.55 16 3 C -0.08 0.13 4.27 -25.92 -0.11 0.02 16 4 H 0.11 -0.20 8.14 -51.93 -0.42 -0.63 16 5 C -0.10 0.23 7.23 -25.92 -0.19 0.05 16 6 C -0.12 0.35 3.75 -89.81 -0.34 0.01 16 7 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 8 C 0.14 -0.28 4.73 -4.05 -0.02 -0.30 16 9 N -0.72 0.05 5.73 -60.42 -0.35 -0.30 16 10 C 0.41 0.95 7.65 -155.02 -1.19 -0.23 16 11 N -0.54 -1.93 10.39 -12.44 -0.13 -2.06 16 12 C 0.16 0.38 9.84 -17.57 -0.17 0.21 16 13 C -0.19 -0.37 5.43 -104.46 -0.57 -0.94 16 14 C -0.06 -0.01 2.83 36.01 0.10 0.09 16 15 O -0.54 -0.76 12.76 -35.23 -0.45 -1.21 16 16 Si 0.68 -0.39 29.82 -169.99 -5.07 -5.46 16 17 C 0.00 -0.01 9.77 -39.32 -0.38 -0.39 16 18 C -0.24 -0.36 9.33 -39.23 -0.37 -0.72 16 19 C -0.12 0.27 7.22 -25.92 -0.19 0.08 16 20 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 21 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 22 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 23 H 0.10 -0.19 8.06 -51.93 -0.42 -0.60 16 24 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 25 H 0.07 -0.14 7.63 -51.93 -0.40 -0.54 16 26 H 0.07 -0.14 7.93 -51.92 -0.41 -0.55 16 27 H 0.41 -0.23 8.60 -40.82 -0.35 -0.59 16 28 H 0.16 0.05 4.88 -52.49 -0.26 -0.21 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.38 -0.98 8.74 45.56 0.40 -0.58 16 31 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 32 H -0.26 -0.34 7.11 56.52 0.40 0.06 16 33 H 0.13 0.05 8.06 -52.48 -0.42 -0.37 16 34 H 0.13 -0.06 6.71 -52.49 -0.35 -0.41 16 35 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 36 H 0.10 -0.14 7.86 -51.93 -0.41 -0.55 16 LS Contribution 311.31 15.07 4.69 4.69 Total: 0.00 -6.04 311.31 -11.20 -17.25 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: -5.19 Total: -9.46 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.33 Total: -0.90 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: -0.48 Total: -2.36 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -0.45 Total: -1.21 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.07 Total: -5.46 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.38 Total: -2.55 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -6.04 -11.20 -17.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.927 kcal (2) G-P(sol) polarization free energy of solvation -6.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds