Wall clock time and date at job start Mon Mar 8 2021 08:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99369 * 2 1 4 4 H 1.08993 * 112.85348 * 43.81040 * 3 2 1 5 5 C 1.53783 * 113.61001 * 175.00239 * 3 2 1 6 6 C 1.53781 * 87.08320 * 140.06347 * 5 3 2 7 7 H 1.08998 * 113.61123 * 89.19565 * 6 5 3 8 8 C 1.52998 * 113.62014 * 220.01952 * 6 5 3 9 9 N 1.46495 * 109.47489 * 185.00329 * 8 6 5 10 10 C 1.39002 * 119.99872 * 180.02562 * 9 8 6 11 11 N 1.32406 * 119.69919 * 179.97438 * 10 9 8 12 12 C 1.31979 * 121.61534 * 179.97438 * 11 10 9 13 13 C 1.38017 * 120.85886 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.33494 * 179.97438 * 13 12 11 15 15 O 1.42905 * 109.46937 * 120.00288 * 14 13 12 16 16 Si 1.86301 * 109.47149 * 0.02562 * 14 13 12 17 17 C 1.38886 * 119.32826 * 0.25509 * 13 12 11 18 18 C 1.38296 * 118.50998 * 359.50218 * 17 13 12 19 19 C 1.53782 * 113.69143 * 272.53468 * 3 2 1 20 20 H 1.09001 * 109.46773 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47320 * 299.99352 * 1 2 3 22 22 H 1.09001 * 109.47425 * 60.00201 * 1 2 3 23 23 H 1.09002 * 113.61763 * 25.51770 * 5 3 2 24 24 H 1.08996 * 113.61663 * 254.61165 * 5 3 2 25 25 H 1.08997 * 109.47067 * 64.99281 * 8 6 5 26 26 H 1.09010 * 109.46823 * 305.00243 * 8 6 5 27 27 H 0.97001 * 119.99960 * 359.97438 * 9 8 6 28 28 H 1.08001 * 119.56816 * 180.02562 * 12 11 10 29 29 H 1.09001 * 109.46927 * 240.00032 * 14 13 12 30 30 H 0.96702 * 113.99404 * 180.02562 * 15 14 13 31 31 H 1.48503 * 109.99816 * 59.99603 * 16 14 13 32 32 H 1.48501 * 109.99942 * 181.31689 * 16 14 13 33 33 H 1.08011 * 120.74554 * 179.74979 * 17 13 12 34 34 H 1.07995 * 120.45283 * 180.22077 * 18 17 13 35 35 H 1.08998 * 113.61149 * 105.46432 * 19 3 2 36 36 H 1.09005 * 113.61434 * 334.55899 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.6108 2.3430 0.6953 5 6 3.7282 2.0521 0.1228 6 6 3.5200 3.1753 -0.9067 7 1 3.2651 4.1360 -0.4592 8 6 4.6469 3.2798 -1.9363 9 7 4.4188 4.4458 -2.7934 10 6 5.3171 4.7470 -3.8105 11 7 5.1049 5.8019 -4.5820 12 6 5.9331 6.1231 -5.5581 13 6 7.0584 5.3646 -5.8100 14 6 7.9959 5.7418 -6.9280 15 8 9.2962 5.9975 -6.3934 16 14 7.3628 7.2733 -7.7793 17 6 7.3148 4.2469 -5.0265 18 6 6.4319 3.9382 -4.0078 19 6 2.3002 2.3837 -1.4068 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 4.3572 1.2389 -0.2395 24 1 4.0257 2.4121 1.1076 25 1 4.6655 2.3775 -2.5474 26 1 5.6011 3.3890 -1.4207 27 1 3.6406 5.0071 -2.6516 28 1 5.7281 6.9911 -6.1671 29 1 8.0527 4.9237 -7.6461 30 1 9.9527 6.2469 -7.0582 31 1 7.2811 8.3958 -6.8105 32 1 8.2615 7.6374 -8.9040 33 1 8.1864 3.6348 -5.2062 34 1 6.6028 3.0783 -3.3772 35 1 1.4448 3.0113 -1.6568 36 1 2.5387 1.6611 -2.1873 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18360572_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:24 Heat of formation + Delta-G solvation = 41.649471 kcal Electronic energy + Delta-G solvation = -17442.232650 eV Core-core repulsion = 14634.254804 eV Total energy + Delta-G solvation = -2807.977847 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38281 -40.08123 -38.04504 -36.39383 -33.52538 -31.89908 -29.88906 -29.04087 -26.73242 -26.05506 -24.95495 -23.76983 -22.24018 -20.67683 -18.72396 -18.47510 -18.14942 -17.32426 -16.72828 -16.57472 -15.83802 -15.80675 -15.60594 -15.24110 -14.94269 -14.73393 -14.28409 -14.12155 -13.97738 -13.95355 -13.86534 -13.48320 -13.38947 -12.91757 -12.40265 -12.03287 -11.86255 -11.67653 -11.45601 -11.08481 -10.80734 -10.72840 -10.59497 -10.30673 -8.71127 -8.67071 -4.91437 0.23183 0.41028 0.77457 1.33264 1.60422 1.62998 1.96623 2.12390 2.80152 3.40354 3.44152 3.46214 3.61634 3.65761 3.76773 3.85206 4.05025 4.11347 4.15094 4.28883 4.30612 4.34712 4.40229 4.50794 4.61826 4.73168 4.76166 4.76697 4.80379 4.85044 4.96611 5.02815 5.05597 5.29125 5.38621 5.53533 6.03209 6.55091 6.63735 7.14908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.311 6.311 3 C -0.076 4.076 4 H 0.112 0.888 5 C -0.098 4.098 6 C -0.106 4.106 7 H 0.110 0.890 8 C 0.140 3.860 9 N -0.718 5.718 10 C 0.393 3.607 11 N -0.564 5.564 12 C 0.145 3.855 13 C -0.200 4.200 14 C -0.066 4.066 15 O -0.560 6.560 16 Si 0.752 3.248 17 C -0.014 4.014 18 C -0.242 4.242 19 C -0.118 4.118 20 H 0.103 0.897 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.407 0.593 28 H 0.166 0.834 29 H 0.096 0.904 30 H 0.394 0.606 31 H -0.301 1.301 32 H -0.282 1.282 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.078 0.922 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -1.450 -0.801 2.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.083 6.083 3 C -0.204 4.204 4 H 0.130 0.870 5 C -0.137 4.137 6 C -0.126 4.126 7 H 0.128 0.872 8 C 0.016 3.984 9 N -0.350 5.350 10 C 0.156 3.844 11 N -0.282 5.282 12 C -0.012 4.012 13 C -0.206 4.206 14 C -0.176 4.176 15 O -0.370 6.370 16 Si 0.658 3.342 17 C -0.039 4.039 18 C -0.267 4.267 19 C -0.158 4.158 20 H 0.122 0.878 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.243 0.757 28 H 0.182 0.818 29 H 0.114 0.886 30 H 0.245 0.755 31 H -0.229 1.229 32 H -0.209 1.209 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.179 -1.388 -0.158 2.588 hybrid contribution 0.781 0.666 0.071 1.029 sum -1.398 -0.722 -0.087 1.576 Atomic orbital electron populations 1.23375 0.92013 1.07044 1.05615 1.87115 1.10151 1.13247 1.97773 1.24743 1.01539 0.92244 1.01881 0.86981 1.22775 0.92849 0.97760 1.00362 1.22618 0.94929 0.99102 0.95992 0.87193 1.21484 0.98681 0.87291 0.90955 1.44553 1.26684 1.31279 1.32501 1.18650 0.88670 0.89263 0.87797 1.67164 1.33542 1.18710 1.08768 1.22385 0.89516 0.97117 0.92219 1.20129 0.98629 0.99380 1.02416 1.24676 0.84959 1.10148 0.97769 1.86545 1.19964 1.90934 1.39522 0.94338 0.88341 0.74659 0.76866 1.21411 0.97072 0.94236 0.91213 1.21642 0.96978 1.04337 1.03760 1.23348 0.98677 0.98835 0.94913 0.87824 0.89777 0.89761 0.89057 0.89239 0.91178 0.91090 0.75677 0.81774 0.88610 0.75532 1.22884 1.20882 0.83618 0.83292 0.90330 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.76 113.37 1.22 1.50 16 2 S -0.31 -0.56 22.18 -56.49 -1.25 -1.81 16 3 C -0.08 0.25 4.27 31.12 0.13 0.38 16 4 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 5 C -0.10 0.49 7.23 31.12 0.23 0.72 16 6 C -0.11 0.68 3.75 -10.27 -0.04 0.64 16 7 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C 0.14 -0.63 4.73 86.38 0.41 -0.22 16 9 N -0.72 0.14 5.73 -345.08 -1.98 -1.84 16 10 C 0.39 1.95 7.65 133.06 1.02 2.97 16 11 N -0.56 -4.44 10.39 -193.26 -2.01 -6.45 16 12 C 0.14 0.79 9.84 84.62 0.83 1.62 16 13 C -0.20 -0.82 5.43 -19.76 -0.11 -0.93 16 14 C -0.07 -0.01 2.83 71.24 0.20 0.19 16 15 O -0.56 -1.43 12.76 -148.98 -1.90 -3.33 16 16 Si 0.75 -0.73 29.82 68.60 2.05 1.31 16 17 C -0.01 -0.05 9.77 22.44 0.22 0.17 16 18 C -0.24 -0.71 9.33 22.50 0.21 -0.50 16 19 C -0.12 0.56 7.22 31.12 0.22 0.78 16 20 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 21 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 22 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.09 -0.35 8.06 -2.39 -0.02 -0.37 16 24 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.07 -0.31 7.63 -2.39 -0.02 -0.33 16 26 H 0.07 -0.34 7.93 -2.38 -0.02 -0.36 16 27 H 0.41 -0.48 8.60 -92.71 -0.80 -1.27 16 28 H 0.17 0.24 4.88 -2.91 -0.01 0.23 16 29 H 0.10 -0.41 7.96 -2.39 -0.02 -0.42 16 30 H 0.39 -2.21 8.74 -74.06 -0.65 -2.85 16 31 H -0.30 -2.08 7.11 99.48 0.71 -1.38 16 32 H -0.28 -0.72 7.11 99.48 0.71 -0.02 16 33 H 0.15 0.04 8.06 -2.90 -0.02 0.01 16 34 H 0.15 -0.20 6.71 -2.91 -0.02 -0.22 16 35 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.09 -0.23 7.86 -2.38 -0.02 -0.25 16 Total: 0.00 -14.55 311.31 -0.87 -15.41 By element: Atomic # 1 Polarization: -10.32 SS G_CDS: -0.32 Total: -10.64 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 4.55 Total: 7.34 kcal Atomic # 7 Polarization: -4.30 SS G_CDS: -3.99 Total: -8.29 kcal Atomic # 8 Polarization: -1.43 SS G_CDS: -1.90 Total: -3.33 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.31 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.25 Total: -1.81 kcal Total: -14.55 -0.87 -15.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.063 kcal (2) G-P(sol) polarization free energy of solvation -14.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds