Wall clock time and date at job start Mon Mar 8 2021 08:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81400 * 102.99852 * 2 1 4 4 H 1.09003 * 112.84903 * 316.19226 * 3 2 1 5 5 C 1.53958 * 113.74405 * 87.39968 * 3 2 1 6 6 C 1.53784 * 87.01929 * 139.94177 * 5 3 2 7 7 H 1.09003 * 113.61586 * 89.22839 * 6 5 3 8 8 C 1.52993 * 113.61373 * 220.05113 * 6 5 3 9 9 N 1.46501 * 109.46888 * 274.13321 * 8 6 5 10 10 C 1.38619 * 119.99757 * 179.97438 * 9 8 6 11 11 N 1.29681 * 124.95206 * 0.03148 * 10 9 8 12 12 C 1.32123 * 116.86931 * 179.97438 * 11 10 9 13 13 C 1.33328 * 114.57316 * 359.97438 * 12 11 10 14 14 C 1.50706 * 125.94505 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47186 * 65.00164 * 14 13 12 16 16 Si 1.86302 * 109.46768 * 184.99843 * 14 13 12 17 17 S 1.70962 * 124.94611 * 180.34103 * 10 9 8 18 18 C 1.53778 * 113.61313 * 184.99745 * 3 2 1 19 19 H 1.08999 * 109.47204 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.46914 * 300.00370 * 1 2 3 21 21 H 1.08996 * 109.46658 * 60.00066 * 1 2 3 22 22 H 1.09005 * 113.61180 * 25.42613 * 5 3 2 23 23 H 1.08997 * 113.66812 * 254.46684 * 5 3 2 24 24 H 1.09007 * 109.47298 * 154.14073 * 8 6 5 25 25 H 1.08999 * 109.47763 * 34.13568 * 8 6 5 26 26 H 0.97001 * 120.00137 * 0.02562 * 9 8 6 27 27 H 1.07994 * 122.71126 * 179.97438 * 12 11 10 28 28 H 1.08992 * 109.47155 * 304.99760 * 14 13 12 29 29 H 0.96698 * 113.99763 * 59.99746 * 15 14 13 30 30 H 1.48503 * 109.99841 * 58.68268 * 16 14 13 31 31 H 1.48504 * 109.99775 * 180.02562 * 16 14 13 32 32 H 1.09000 * 113.61371 * 105.38433 * 18 3 2 33 33 H 1.09004 * 113.61749 * 334.48680 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 -0.6954 5 6 2.2992 2.3859 1.4078 6 6 3.5202 3.1753 0.9067 7 1 3.2654 4.1360 0.4591 8 6 4.6472 3.2796 1.9362 9 7 4.3999 4.4243 2.8165 10 6 5.2922 4.7207 3.8351 11 7 6.3728 4.0522 4.0940 12 6 7.1098 4.4769 5.1050 13 6 6.6294 5.5535 5.7276 14 6 7.2603 6.2489 6.9065 15 8 8.5137 6.8112 6.5129 16 14 6.1315 7.6051 7.5044 17 16 5.1244 6.0164 4.9377 18 6 3.7284 2.0520 -0.1227 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 2.5368 1.6641 2.1893 23 1 1.4447 3.0151 1.6567 24 1 5.5982 3.4161 1.4213 25 1 4.6831 2.3660 2.5296 26 1 3.6114 4.9742 2.6871 27 1 8.0272 3.9911 5.4030 28 1 7.4209 5.5295 7.7093 29 1 8.4466 7.4615 5.8004 30 1 4.8137 7.0373 7.8867 31 1 6.7426 8.2990 8.6664 32 1 4.0259 2.4120 -1.1076 33 1 4.3573 1.2387 0.2395 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18360572_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:28 Heat of formation + Delta-G solvation = 43.862070 kcal Electronic energy + Delta-G solvation = -16134.518331 eV Core-core repulsion = 13415.788676 eV Total energy + Delta-G solvation = -2718.729655 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80476 -40.11208 -37.93434 -36.34409 -31.59924 -30.03968 -29.44433 -26.92590 -26.37192 -24.88536 -23.75060 -21.01494 -20.70356 -19.66224 -18.14018 -17.65648 -16.92167 -16.80776 -16.47794 -15.99029 -15.80066 -15.60477 -15.24874 -14.85099 -14.79953 -14.36246 -14.16456 -13.97522 -13.64720 -13.60303 -13.05146 -12.84701 -12.32533 -12.06772 -12.01114 -11.81691 -11.62584 -11.13188 -10.86566 -10.76666 -10.21319 -10.13932 -8.72828 -8.67937 -5.13256 0.00164 0.05327 0.69553 0.71302 1.27485 1.54626 1.60016 1.92111 2.06693 2.12293 3.23303 3.28742 3.44919 3.47638 3.56205 3.78761 3.95955 4.00259 4.14415 4.17086 4.19470 4.49243 4.50020 4.57350 4.61562 4.69230 4.72350 4.77196 4.79325 4.90322 5.09210 5.22719 5.81614 6.03639 6.54355 7.03356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.123 4.123 6 C -0.122 4.122 7 H 0.101 0.899 8 C 0.146 3.854 9 N -0.692 5.692 10 C 0.327 3.673 11 N -0.551 5.551 12 C 0.120 3.880 13 C -0.308 4.308 14 C -0.010 4.010 15 O -0.537 6.537 16 Si 0.657 3.343 17 S 0.084 5.916 18 C -0.098 4.098 19 H 0.101 0.899 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.097 0.903 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.414 0.586 27 H 0.176 0.824 28 H 0.122 0.878 29 H 0.379 0.621 30 H -0.242 1.242 31 H -0.236 1.236 32 H 0.083 0.917 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 3.204 -2.610 5.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.163 4.163 6 C -0.143 4.143 7 H 0.119 0.881 8 C 0.021 3.979 9 N -0.332 5.332 10 C -0.044 4.044 11 N -0.277 5.277 12 C -0.031 4.031 13 C -0.430 4.430 14 C -0.124 4.124 15 O -0.343 6.343 16 Si 0.557 3.443 17 S 0.333 5.667 18 C -0.138 4.138 19 H 0.119 0.881 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.116 0.884 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.251 0.749 27 H 0.192 0.808 28 H 0.139 0.861 29 H 0.227 0.773 30 H -0.166 1.166 31 H -0.159 1.159 32 H 0.102 0.898 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.718 2.373 -1.785 4.758 hybrid contribution -0.355 0.155 0.032 0.389 sum -4.073 2.528 -1.753 5.104 Atomic orbital electron populations 1.23373 0.94124 1.06648 1.04931 1.87000 1.07570 1.10292 1.97617 1.24705 1.01054 0.94342 1.01165 0.87614 1.23447 0.98075 0.99126 0.95664 1.22773 0.95729 0.99013 0.96751 0.88071 1.21403 0.97933 0.88311 0.90302 1.44021 1.24760 1.33361 1.31019 1.23738 0.92431 0.94729 0.93498 1.66484 1.06377 1.32841 1.21955 1.21333 0.98978 0.92793 0.89963 1.25561 1.01338 1.06577 1.09555 1.24113 0.91033 1.02322 0.94981 1.86514 1.28246 1.61023 1.58476 0.94990 0.78778 0.83072 0.87446 1.83914 1.24508 1.31362 1.26957 1.22744 0.93369 0.97806 0.99836 0.88050 0.90439 0.90479 0.88410 0.90853 0.90988 0.90968 0.74881 0.80751 0.86125 0.77301 1.16608 1.15949 0.89809 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.24 16 2 S -0.25 -0.20 22.19 -107.50 -2.39 -2.59 16 3 C -0.08 0.13 4.27 -25.83 -0.11 0.02 16 4 H 0.11 -0.23 8.14 -51.93 -0.42 -0.66 16 5 C -0.12 0.30 7.24 -25.82 -0.19 0.11 16 6 C -0.12 0.38 3.75 -89.81 -0.34 0.04 16 7 H 0.10 -0.41 8.14 -51.93 -0.42 -0.84 16 8 C 0.15 -0.20 5.77 -4.04 -0.02 -0.22 16 9 N -0.69 0.80 5.71 -62.30 -0.36 0.44 16 10 C 0.33 0.41 8.09 -87.68 -0.71 -0.30 16 11 N -0.55 -1.76 10.14 -15.21 -0.15 -1.91 16 12 C 0.12 0.26 11.24 -19.14 -0.22 0.05 16 13 C -0.31 -0.28 5.73 -36.02 -0.21 -0.49 16 14 C -0.01 0.00 2.99 36.01 0.11 0.11 16 15 O -0.54 -0.22 12.88 -35.23 -0.45 -0.67 16 16 Si 0.66 -0.38 31.06 -169.99 -5.28 -5.66 16 17 S 0.08 0.00 20.59 -107.50 -2.21 -2.22 16 18 C -0.10 0.21 7.23 -25.92 -0.19 0.02 16 19 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 20 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 21 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 22 H 0.10 -0.11 7.88 -51.93 -0.41 -0.52 16 23 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 24 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 25 H 0.07 0.00 7.87 -51.93 -0.41 -0.41 16 26 H 0.41 -1.40 8.60 -40.82 -0.35 -1.75 16 27 H 0.18 0.19 8.06 -52.49 -0.42 -0.24 16 28 H 0.12 0.02 7.96 -51.93 -0.41 -0.40 16 29 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 30 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 31 H -0.24 -0.48 7.11 56.52 0.40 -0.08 16 32 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 33 H 0.10 -0.12 8.06 -51.93 -0.42 -0.54 16 LS Contribution 306.12 15.07 4.61 4.61 Total: 0.00 -5.49 306.12 -11.62 -17.11 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -4.61 Total: -9.71 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.78 Total: 0.59 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -0.51 Total: -1.47 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -0.45 Total: -0.67 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: -5.28 Total: -5.66 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -4.60 Total: -4.80 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -5.49 -11.62 -17.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.968 kcal (2) G-P(sol) polarization free energy of solvation -5.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds