Wall clock time and date at job start Mon Mar 8 2021 08:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81400 * 102.99852 * 2 1 4 4 H 1.09003 * 112.84903 * 316.19226 * 3 2 1 5 5 C 1.53958 * 113.74405 * 87.39968 * 3 2 1 6 6 C 1.53784 * 87.01929 * 139.94177 * 5 3 2 7 7 H 1.09003 * 113.61586 * 89.22839 * 6 5 3 8 8 C 1.52993 * 113.61373 * 220.05113 * 6 5 3 9 9 N 1.46501 * 109.46888 * 274.13321 * 8 6 5 10 10 C 1.38619 * 119.99757 * 179.97438 * 9 8 6 11 11 N 1.29681 * 124.95206 * 0.03148 * 10 9 8 12 12 C 1.32123 * 116.86931 * 179.97438 * 11 10 9 13 13 C 1.33328 * 114.57316 * 359.97438 * 12 11 10 14 14 C 1.50706 * 125.94505 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47186 * 65.00164 * 14 13 12 16 16 Si 1.86302 * 109.46768 * 184.99843 * 14 13 12 17 17 S 1.70962 * 124.94611 * 180.34103 * 10 9 8 18 18 C 1.53778 * 113.61313 * 184.99745 * 3 2 1 19 19 H 1.08999 * 109.47204 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.46914 * 300.00370 * 1 2 3 21 21 H 1.08996 * 109.46658 * 60.00066 * 1 2 3 22 22 H 1.09005 * 113.61180 * 25.42613 * 5 3 2 23 23 H 1.08997 * 113.66812 * 254.46684 * 5 3 2 24 24 H 1.09007 * 109.47298 * 154.14073 * 8 6 5 25 25 H 1.08999 * 109.47763 * 34.13568 * 8 6 5 26 26 H 0.97001 * 120.00137 * 0.02562 * 9 8 6 27 27 H 1.07994 * 122.71126 * 179.97438 * 12 11 10 28 28 H 1.08992 * 109.47155 * 304.99760 * 14 13 12 29 29 H 0.96698 * 113.99763 * 59.99746 * 15 14 13 30 30 H 1.48503 * 109.99841 * 58.68268 * 16 14 13 31 31 H 1.48504 * 109.99775 * 180.02562 * 16 14 13 32 32 H 1.09000 * 113.61371 * 105.38433 * 18 3 2 33 33 H 1.09004 * 113.61749 * 334.48680 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 -0.6954 5 6 2.2992 2.3859 1.4078 6 6 3.5202 3.1753 0.9067 7 1 3.2654 4.1360 0.4591 8 6 4.6472 3.2796 1.9362 9 7 4.3999 4.4243 2.8165 10 6 5.2922 4.7207 3.8351 11 7 6.3728 4.0522 4.0940 12 6 7.1098 4.4769 5.1050 13 6 6.6294 5.5535 5.7276 14 6 7.2603 6.2489 6.9065 15 8 8.5137 6.8112 6.5129 16 14 6.1315 7.6051 7.5044 17 16 5.1244 6.0164 4.9377 18 6 3.7284 2.0520 -0.1227 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 2.5368 1.6641 2.1893 23 1 1.4447 3.0151 1.6567 24 1 5.5982 3.4161 1.4213 25 1 4.6831 2.3660 2.5296 26 1 3.6114 4.9742 2.6871 27 1 8.0272 3.9911 5.4030 28 1 7.4209 5.5295 7.7093 29 1 8.4466 7.4615 5.8004 30 1 4.8137 7.0373 7.8867 31 1 6.7426 8.2990 8.6664 32 1 4.0259 2.4120 -1.1076 33 1 4.3573 1.2387 0.2395 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18360572_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:27 Heat of formation + Delta-G solvation = 48.056329 kcal Electronic energy + Delta-G solvation = -16134.336454 eV Core-core repulsion = 13415.788676 eV Total energy + Delta-G solvation = -2718.547778 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82578 -40.02004 -37.93755 -36.31624 -31.62998 -29.94397 -29.38255 -26.77668 -26.38947 -24.85694 -23.72029 -20.91310 -20.71630 -19.63687 -18.15755 -17.63289 -16.84020 -16.75376 -16.49442 -15.98754 -15.77956 -15.60639 -15.18667 -14.87150 -14.78255 -14.28320 -14.08566 -14.00365 -13.51525 -13.47549 -12.94501 -12.86882 -12.44848 -12.05246 -11.89026 -11.69191 -11.51405 -11.09399 -10.84423 -10.78278 -10.26582 -10.17496 -8.74199 -8.71993 -5.11733 -0.05604 0.02634 0.66379 0.76885 1.26882 1.58507 1.63150 1.89153 1.97107 2.18896 3.36833 3.44351 3.52330 3.61195 3.68191 3.84929 3.94433 4.15561 4.28843 4.29927 4.35500 4.48291 4.62068 4.70671 4.72983 4.75184 4.81402 4.84303 4.93372 5.02824 5.07537 5.38908 5.80333 6.16777 6.73133 7.01979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.319 6.319 3 C -0.072 4.072 4 H 0.118 0.882 5 C -0.119 4.119 6 C -0.104 4.104 7 H 0.122 0.878 8 C 0.152 3.848 9 N -0.682 5.682 10 C 0.314 3.686 11 N -0.583 5.583 12 C 0.103 3.897 13 C -0.310 4.310 14 C -0.015 4.015 15 O -0.551 6.551 16 Si 0.735 3.265 17 S 0.120 5.880 18 C -0.101 4.101 19 H 0.102 0.898 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.426 0.574 27 H 0.176 0.824 28 H 0.118 0.882 29 H 0.395 0.605 30 H -0.269 1.269 31 H -0.272 1.272 32 H 0.092 0.908 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 4.531 -3.097 7.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.201 4.201 4 H 0.136 0.864 5 C -0.159 4.159 6 C -0.125 4.125 7 H 0.140 0.860 8 C 0.026 3.974 9 N -0.323 5.323 10 C -0.057 4.057 11 N -0.310 5.310 12 C -0.048 4.048 13 C -0.433 4.433 14 C -0.128 4.128 15 O -0.359 6.359 16 Si 0.638 3.362 17 S 0.369 5.631 18 C -0.140 4.140 19 H 0.120 0.880 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.265 0.735 27 H 0.193 0.807 28 H 0.135 0.865 29 H 0.245 0.755 30 H -0.195 1.195 31 H -0.198 1.198 32 H 0.110 0.890 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.662 3.707 -2.305 6.387 hybrid contribution -0.061 -0.260 0.208 0.339 sum -4.723 3.447 -2.097 6.212 Atomic orbital electron populations 1.23366 0.91738 1.07017 1.05715 1.87226 1.10424 1.13691 1.97779 1.24777 1.01304 0.92034 1.01966 0.86380 1.23378 0.98797 0.98891 0.94795 1.22681 0.94543 0.99525 0.95724 0.85969 1.21297 0.98287 0.87562 0.90271 1.44058 1.24660 1.33310 1.30248 1.23990 0.92424 0.95153 0.94154 1.66474 1.07473 1.34125 1.22897 1.21431 0.99409 0.93557 0.90414 1.25707 1.01815 1.06244 1.09528 1.24254 0.91252 1.02654 0.94674 1.86480 1.28425 1.61669 1.59302 0.94100 0.75884 0.80743 0.85485 1.83708 1.23381 1.30179 1.25876 1.22763 0.92982 0.97778 1.00521 0.87962 0.89680 0.89573 0.89962 0.89436 0.91950 0.92730 0.73455 0.80720 0.86485 0.75521 1.19543 1.19755 0.88964 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.29 10.76 113.37 1.22 1.51 16 2 S -0.32 -0.77 22.19 -56.49 -1.25 -2.03 16 3 C -0.07 0.26 4.27 31.18 0.13 0.39 16 4 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 5 C -0.12 0.64 7.24 31.18 0.23 0.86 16 6 C -0.10 0.73 3.75 -10.27 -0.04 0.69 16 7 H 0.12 -1.28 8.14 -2.39 -0.02 -1.30 16 8 C 0.15 -0.37 5.77 86.38 0.50 0.13 16 9 N -0.68 1.85 5.71 -351.01 -2.01 -0.16 16 10 C 0.31 0.80 8.09 179.32 1.45 2.25 16 11 N -0.58 -4.23 10.14 -202.03 -2.05 -6.28 16 12 C 0.10 0.54 11.24 83.54 0.94 1.48 16 13 C -0.31 -0.61 5.73 24.58 0.14 -0.47 16 14 C -0.01 0.00 2.99 71.24 0.21 0.21 16 15 O -0.55 -0.37 12.88 -148.98 -1.92 -2.29 16 16 Si 0.73 -1.02 31.06 68.60 2.13 1.11 16 17 S 0.12 -0.08 20.59 -56.49 -1.16 -1.25 16 18 C -0.10 0.43 7.23 31.12 0.23 0.65 16 19 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 20 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 21 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 22 H 0.08 -0.14 7.88 -2.38 -0.02 -0.16 16 23 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 25 H 0.05 0.08 7.87 -2.39 -0.02 0.06 16 26 H 0.43 -3.44 8.60 -92.71 -0.80 -4.23 16 27 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 28 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 29 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 30 H -0.27 -0.86 7.11 99.48 0.71 -0.16 16 31 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 32 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.08 -0.09 8.06 -2.38 -0.02 -0.11 16 Total: 0.00 -13.88 306.12 -1.53 -15.41 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -0.28 Total: -12.22 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.01 Total: 7.70 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -4.05 Total: -6.44 kcal Atomic # 8 Polarization: -0.37 SS G_CDS: -1.92 Total: -2.29 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.13 Total: 1.11 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.42 Total: -3.27 kcal Total: -13.88 -1.53 -15.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.468 kcal (2) G-P(sol) polarization free energy of solvation -13.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds