Wall clock time and date at job start Mon Mar 8 2021 08:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08998 * 112.84722 * 45.33205 * 3 2 1 5 5 C 1.53780 * 113.61233 * 176.52641 * 3 2 1 6 6 C 1.53789 * 87.07893 * 139.98086 * 5 3 2 7 7 H 1.09002 * 113.60850 * 89.20219 * 6 5 3 8 8 C 1.53000 * 113.61685 * 220.01786 * 6 5 3 9 9 N 1.46492 * 109.47023 * 185.00030 * 8 6 5 10 10 C 1.38609 * 120.00036 * 180.02562 * 9 8 6 11 11 N 1.29690 * 124.95181 * 179.71897 * 10 9 8 12 12 C 1.32122 * 116.86527 * 179.81581 * 11 10 9 13 13 C 1.50693 * 122.70841 * 180.23015 * 12 11 10 14 14 O 1.42902 * 109.47001 * 210.26407 * 13 12 11 15 15 Si 1.86302 * 109.47430 * 330.26586 * 13 12 11 16 16 C 1.33324 * 114.57907 * 0.47129 * 12 11 10 17 17 C 1.50704 * 125.95125 * 179.75243 * 16 12 11 18 18 S 1.70968 * 124.94680 * 0.02562 * 10 9 8 19 19 C 1.53777 * 113.61504 * 274.13434 * 3 2 1 20 20 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 21 21 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 23 23 H 1.08992 * 113.61837 * 254.52909 * 5 3 2 24 24 H 1.09001 * 113.61413 * 25.43723 * 5 3 2 25 25 H 1.09001 * 109.47061 * 305.00359 * 8 6 5 26 26 H 1.09000 * 109.46851 * 65.00233 * 8 6 5 27 27 H 0.96999 * 120.00112 * 0.02562 * 9 8 6 28 28 H 1.09000 * 109.47740 * 90.26668 * 13 12 11 29 29 H 0.96705 * 113.99979 * 60.00307 * 14 13 12 30 30 H 1.48496 * 109.99719 * 58.67933 * 15 13 12 31 31 H 1.48501 * 110.00276 * 180.02562 * 15 13 12 32 32 H 1.09004 * 109.47171 * 180.02562 * 17 16 12 33 33 H 1.09004 * 109.47089 * 300.02875 * 17 16 12 34 34 H 1.08995 * 109.46823 * 60.02895 * 17 16 12 35 35 H 1.08999 * 113.61825 * 334.57413 * 19 3 2 36 36 H 1.09009 * 113.61337 * 105.46861 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6292 2.3387 0.7144 5 6 3.7310 2.0513 0.0854 6 6 3.4967 3.1793 -0.9334 7 1 3.2537 4.1379 -0.4750 8 6 4.5969 3.2883 -1.9910 9 7 4.3470 4.4581 -2.8367 10 6 5.2164 4.7631 -3.8722 11 7 5.0852 5.7687 -4.6806 12 6 6.0121 5.9115 -5.6112 13 6 5.9918 7.0351 -6.6152 14 8 6.6000 6.5976 -7.8321 15 14 4.2293 7.5389 -6.9479 16 6 6.9641 4.9782 -5.5935 17 6 8.1358 4.8915 -6.5374 18 16 6.6138 3.8641 -4.2746 19 6 2.2617 2.3906 -1.4053 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0538 2.4067 1.0638 24 1 4.3503 1.2396 -0.2967 25 1 5.5640 3.3951 -1.4996 26 1 4.5994 2.3888 -2.6066 27 1 3.5731 5.0192 -2.6720 28 1 6.5444 7.8868 -6.2186 29 1 6.1593 5.8407 -8.2421 30 1 3.5761 7.9658 -5.6844 31 1 4.1956 8.6461 -7.9370 32 1 8.7450 4.0246 -6.2816 33 1 7.7719 4.7909 -7.5600 34 1 8.7378 5.7962 -6.4533 35 1 2.4783 1.6719 -2.1957 36 1 1.3998 3.0196 -1.6285 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18360572_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:31 Heat of formation + Delta-G solvation = 41.222224 kcal Electronic energy + Delta-G solvation = -18062.310940 eV Core-core repulsion = 15187.929194 eV Total energy + Delta-G solvation = -2874.381746 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.01358 -40.34230 -37.92366 -36.40045 -32.81726 -30.24079 -29.86072 -28.46865 -26.95218 -25.56426 -24.45739 -23.91895 -21.20234 -20.31637 -19.10823 -17.94189 -17.61861 -17.21375 -16.91061 -16.56350 -15.97988 -15.78234 -15.52459 -15.29983 -14.91711 -14.49542 -14.20721 -14.11505 -13.86364 -13.78870 -13.70100 -13.64880 -13.39011 -13.06915 -12.65930 -12.23222 -12.10287 -11.93288 -11.79456 -11.62920 -10.99656 -10.88848 -10.53902 -10.30487 -9.92032 -8.71550 -8.59306 -4.82655 0.07745 0.22410 0.65597 0.83059 1.41916 1.50839 1.86658 1.93583 1.97991 2.27811 3.16511 3.19813 3.37704 3.43307 3.51415 3.59894 3.87893 4.07560 4.12665 4.15304 4.21231 4.30704 4.37766 4.45473 4.51288 4.55253 4.58571 4.69368 4.72946 4.79637 4.84408 4.93673 5.09769 5.13830 5.33137 5.57766 6.26960 6.52649 7.00650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.253 6.253 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.099 4.099 6 C -0.118 4.118 7 H 0.104 0.896 8 C 0.133 3.867 9 N -0.693 5.693 10 C 0.318 3.682 11 N -0.546 5.546 12 C 0.066 3.934 13 C -0.033 4.033 14 O -0.536 6.536 15 Si 0.716 3.284 16 C -0.239 4.239 17 C -0.059 4.059 18 S 0.101 5.899 19 C -0.123 4.123 20 H 0.077 0.923 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.412 0.588 28 H 0.119 0.881 29 H 0.378 0.622 30 H -0.253 1.253 31 H -0.262 1.262 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -2.883 0.997 3.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.024 6.024 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.138 4.138 6 C -0.138 4.138 7 H 0.122 0.878 8 C 0.008 3.992 9 N -0.334 5.334 10 C -0.053 4.053 11 N -0.273 5.273 12 C -0.065 4.065 13 C -0.146 4.146 14 O -0.340 6.340 15 Si 0.617 3.383 16 C -0.362 4.362 17 C -0.119 4.119 18 S 0.350 5.650 19 C -0.162 4.162 20 H 0.096 0.904 21 H 0.120 0.880 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.250 0.750 28 H 0.137 0.863 29 H 0.226 0.774 30 H -0.177 1.177 31 H -0.188 1.188 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.343 -3.395 1.795 4.069 hybrid contribution -0.777 1.897 0.184 2.059 sum -2.120 -1.498 1.979 3.264 Atomic orbital electron populations 1.23375 0.94006 1.06682 1.04994 1.86961 1.07711 1.10125 1.97643 1.24662 1.00963 0.94480 1.01199 0.87556 1.22761 0.93518 0.97629 0.99932 1.22725 0.95495 0.99276 0.96314 0.87797 1.21563 0.98889 0.87301 0.91402 1.43911 1.27874 1.31025 1.30636 1.23262 0.94698 0.94067 0.93318 1.65969 1.30502 1.21972 1.08827 1.20101 0.90990 0.98606 0.96753 1.24515 1.11197 0.95317 0.83581 1.86524 1.58099 1.53485 1.35924 0.94077 0.76925 0.84941 0.82363 1.25120 1.05274 1.00965 1.04873 1.20148 0.92837 1.02074 0.96795 1.84006 1.21208 1.30783 1.29048 1.23450 0.98054 0.99018 0.95724 0.90378 0.88013 0.90467 0.89714 0.88515 0.91083 0.90885 0.74993 0.86342 0.77375 1.17684 1.18784 0.92377 0.89882 0.90746 0.88310 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.20 10.76 101.05 1.09 1.29 16 2 S -0.25 -0.05 22.17 -107.50 -2.38 -2.43 16 3 C -0.08 0.17 4.27 -25.92 -0.11 0.06 16 4 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 5 C -0.10 0.29 7.23 -25.92 -0.19 0.10 16 6 C -0.12 0.42 3.75 -89.71 -0.34 0.08 16 7 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 8 C 0.13 -0.34 5.37 -4.05 -0.02 -0.37 16 9 N -0.69 0.50 5.71 -62.30 -0.36 0.14 16 10 C 0.32 0.55 8.24 -87.68 -0.72 -0.17 16 11 N -0.55 -1.80 8.94 -11.36 -0.10 -1.91 16 12 C 0.07 0.16 5.92 -84.19 -0.50 -0.34 16 13 C -0.03 -0.05 2.94 36.00 0.11 0.06 16 14 O -0.54 -0.13 10.17 -35.23 -0.36 -0.48 16 15 Si 0.72 0.84 32.08 -169.99 -5.45 -4.61 16 16 C -0.24 -0.40 6.50 -36.02 -0.23 -0.63 16 17 C -0.06 0.00 8.91 36.01 0.32 0.32 16 18 S 0.10 0.09 22.32 -107.50 -2.40 -2.31 16 19 C -0.12 0.35 7.24 -25.83 -0.19 0.16 16 20 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 21 H 0.10 -0.20 8.14 -51.92 -0.42 -0.62 16 22 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 23 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 24 H 0.10 -0.24 8.06 -51.93 -0.42 -0.66 16 25 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 26 H 0.07 -0.18 7.85 -51.93 -0.41 -0.59 16 27 H 0.41 -0.54 8.60 -40.82 -0.35 -0.89 16 28 H 0.12 0.22 7.96 -51.93 -0.41 -0.20 16 29 H 0.38 -1.23 8.13 45.56 0.37 -0.86 16 30 H -0.25 -1.17 7.11 56.52 0.40 -0.76 16 31 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 32 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 33 H 0.08 -0.09 6.39 -51.93 -0.33 -0.43 16 34 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.10 -0.21 7.86 -51.93 -0.41 -0.61 16 36 H 0.07 -0.23 8.14 -51.92 -0.42 -0.65 16 LS Contribution 323.01 15.07 4.87 4.87 Total: 0.00 -5.45 323.01 -12.35 -17.80 By element: Atomic # 1 Polarization: -6.25 SS G_CDS: -5.39 Total: -11.63 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.79 Total: 0.57 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -0.46 Total: -1.76 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -0.36 Total: -0.48 kcal Atomic # 14 Polarization: 0.84 SS G_CDS: -5.45 Total: -4.61 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -4.78 Total: -4.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -5.45 -12.35 -17.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.023 kcal (2) G-P(sol) polarization free energy of solvation -5.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds