Wall clock time and date at job start Mon Mar 8 2021 08:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08998 * 112.84722 * 45.33205 * 3 2 1 5 5 C 1.53780 * 113.61233 * 176.52641 * 3 2 1 6 6 C 1.53789 * 87.07893 * 139.98086 * 5 3 2 7 7 H 1.09002 * 113.60850 * 89.20219 * 6 5 3 8 8 C 1.53000 * 113.61685 * 220.01786 * 6 5 3 9 9 N 1.46492 * 109.47023 * 185.00030 * 8 6 5 10 10 C 1.38609 * 120.00036 * 180.02562 * 9 8 6 11 11 N 1.29690 * 124.95181 * 179.71897 * 10 9 8 12 12 C 1.32122 * 116.86527 * 179.81581 * 11 10 9 13 13 C 1.50693 * 122.70841 * 180.23015 * 12 11 10 14 14 O 1.42902 * 109.47001 * 210.26407 * 13 12 11 15 15 Si 1.86302 * 109.47430 * 330.26586 * 13 12 11 16 16 C 1.33324 * 114.57907 * 0.47129 * 12 11 10 17 17 C 1.50704 * 125.95125 * 179.75243 * 16 12 11 18 18 S 1.70968 * 124.94680 * 0.02562 * 10 9 8 19 19 C 1.53777 * 113.61504 * 274.13434 * 3 2 1 20 20 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 21 21 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 23 23 H 1.08992 * 113.61837 * 254.52909 * 5 3 2 24 24 H 1.09001 * 113.61413 * 25.43723 * 5 3 2 25 25 H 1.09001 * 109.47061 * 305.00359 * 8 6 5 26 26 H 1.09000 * 109.46851 * 65.00233 * 8 6 5 27 27 H 0.96999 * 120.00112 * 0.02562 * 9 8 6 28 28 H 1.09000 * 109.47740 * 90.26668 * 13 12 11 29 29 H 0.96705 * 113.99979 * 60.00307 * 14 13 12 30 30 H 1.48496 * 109.99719 * 58.67933 * 15 13 12 31 31 H 1.48501 * 110.00276 * 180.02562 * 15 13 12 32 32 H 1.09004 * 109.47171 * 180.02562 * 17 16 12 33 33 H 1.09004 * 109.47089 * 300.02875 * 17 16 12 34 34 H 1.08995 * 109.46823 * 60.02895 * 17 16 12 35 35 H 1.08999 * 113.61825 * 334.57413 * 19 3 2 36 36 H 1.09009 * 113.61337 * 105.46861 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6292 2.3387 0.7144 5 6 3.7310 2.0513 0.0854 6 6 3.4967 3.1793 -0.9334 7 1 3.2537 4.1379 -0.4750 8 6 4.5969 3.2883 -1.9910 9 7 4.3470 4.4581 -2.8367 10 6 5.2164 4.7631 -3.8722 11 7 5.0852 5.7687 -4.6806 12 6 6.0121 5.9115 -5.6112 13 6 5.9918 7.0351 -6.6152 14 8 6.6000 6.5976 -7.8321 15 14 4.2293 7.5389 -6.9479 16 6 6.9641 4.9782 -5.5935 17 6 8.1358 4.8915 -6.5374 18 16 6.6138 3.8641 -4.2746 19 6 2.2617 2.3906 -1.4053 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0538 2.4067 1.0638 24 1 4.3503 1.2396 -0.2967 25 1 5.5640 3.3951 -1.4996 26 1 4.5994 2.3888 -2.6066 27 1 3.5731 5.0192 -2.6720 28 1 6.5444 7.8868 -6.2186 29 1 6.1593 5.8407 -8.2421 30 1 3.5761 7.9658 -5.6844 31 1 4.1956 8.6461 -7.9370 32 1 8.7450 4.0246 -6.2816 33 1 7.7719 4.7909 -7.5600 34 1 8.7378 5.7962 -6.4533 35 1 2.4783 1.6719 -2.1957 36 1 1.3998 3.0196 -1.6285 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18360572_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:30 Heat of formation + Delta-G solvation = 46.937670 kcal Electronic energy + Delta-G solvation = -18062.063100 eV Core-core repulsion = 15187.929194 eV Total energy + Delta-G solvation = -2874.133906 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.075 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07585 -40.17654 -37.93706 -36.36621 -32.83408 -30.16868 -29.76595 -28.43849 -26.73858 -25.60407 -24.42933 -23.84881 -21.12209 -20.23563 -19.15190 -17.93888 -17.60111 -17.17293 -16.79765 -16.57864 -15.92632 -15.71798 -15.61179 -15.18576 -14.88336 -14.38730 -14.28106 -14.05438 -13.84925 -13.76465 -13.58006 -13.49069 -13.38942 -12.93434 -12.69750 -12.35617 -12.01137 -11.90858 -11.74600 -11.44952 -10.95853 -10.79820 -10.63237 -10.38969 -9.99460 -8.71122 -8.62182 -4.96134 -0.00237 0.16902 0.75558 0.76744 1.30496 1.62446 1.73122 1.84193 1.94993 2.12079 3.32716 3.38406 3.46262 3.56016 3.61609 3.73006 4.07679 4.19494 4.28313 4.28828 4.30621 4.33762 4.47512 4.52273 4.66076 4.73460 4.76655 4.85021 4.87122 4.90089 4.94932 5.00454 5.10237 5.33368 5.35726 5.62158 6.30601 6.67519 6.95481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.310 6.310 3 C -0.076 4.076 4 H 0.112 0.888 5 C -0.098 4.098 6 C -0.104 4.104 7 H 0.114 0.886 8 C 0.133 3.867 9 N -0.687 5.687 10 C 0.308 3.692 11 N -0.574 5.574 12 C 0.053 3.947 13 C -0.030 4.030 14 O -0.540 6.540 15 Si 0.791 3.209 16 C -0.248 4.248 17 C -0.058 4.058 18 S 0.120 5.880 19 C -0.119 4.119 20 H 0.084 0.916 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.415 0.585 28 H 0.112 0.888 29 H 0.395 0.605 30 H -0.301 1.301 31 H -0.294 1.294 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -3.189 0.998 3.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.082 6.082 3 C -0.204 4.204 4 H 0.131 0.869 5 C -0.137 4.137 6 C -0.124 4.124 7 H 0.132 0.868 8 C 0.010 3.990 9 N -0.328 5.328 10 C -0.064 4.064 11 N -0.302 5.302 12 C -0.077 4.077 13 C -0.143 4.143 14 O -0.347 6.347 15 Si 0.698 3.302 16 C -0.371 4.371 17 C -0.117 4.117 18 S 0.368 5.632 19 C -0.159 4.159 20 H 0.103 0.897 21 H 0.121 0.879 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.253 0.747 28 H 0.129 0.871 29 H 0.245 0.755 30 H -0.229 1.229 31 H -0.222 1.222 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.217 -3.738 1.793 4.321 hybrid contribution -0.842 1.989 0.233 2.173 sum -2.059 -1.749 2.026 3.377 Atomic orbital electron populations 1.23373 0.92041 1.07037 1.05615 1.87128 1.10108 1.13142 1.97782 1.24732 1.01505 0.92336 1.01870 0.86937 1.22774 0.92920 0.97614 1.00409 1.22627 0.94705 0.99408 0.95692 0.86831 1.21646 0.99398 0.86627 0.91367 1.44056 1.27443 1.31278 1.30004 1.23515 0.95332 0.93982 0.93543 1.65971 1.31468 1.23055 1.09745 1.20221 0.91338 0.99118 0.97053 1.24441 1.10877 0.95080 0.83948 1.86492 1.58380 1.54423 1.35370 0.93198 0.75412 0.83182 0.78434 1.25372 1.05492 1.00969 1.05272 1.20184 0.92305 1.01993 0.97190 1.83875 1.20520 1.30171 1.28600 1.23400 0.98561 0.98841 0.95054 0.89731 0.87851 0.89811 0.89062 0.88980 0.90732 0.90780 0.74708 0.87089 0.75509 1.22854 1.22157 0.91702 0.88615 0.91433 0.89083 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.58 16 2 S -0.31 -0.29 22.17 -56.49 -1.25 -1.54 16 3 C -0.08 0.33 4.27 31.12 0.13 0.47 16 4 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 5 C -0.10 0.61 7.23 31.12 0.23 0.83 16 6 C -0.10 0.81 3.75 -10.21 -0.04 0.77 16 7 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 8 C 0.13 -0.76 5.37 86.38 0.46 -0.30 16 9 N -0.69 1.13 5.71 -351.02 -2.01 -0.87 16 10 C 0.31 1.08 8.24 179.32 1.48 2.56 16 11 N -0.57 -4.08 8.94 -189.87 -1.70 -5.78 16 12 C 0.05 0.27 5.92 41.40 0.25 0.52 16 13 C -0.03 -0.09 2.94 71.23 0.21 0.12 16 14 O -0.54 0.00 10.17 -148.98 -1.52 -1.51 16 15 Si 0.79 2.57 32.08 68.60 2.20 4.77 16 16 C -0.25 -0.77 6.50 24.58 0.16 -0.61 16 17 C -0.06 0.03 8.91 71.24 0.63 0.66 16 18 S 0.12 0.17 22.32 -56.49 -1.26 -1.09 16 19 C -0.12 0.73 7.24 31.18 0.23 0.95 16 20 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 21 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 22 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H 0.09 -0.45 8.06 -2.39 -0.02 -0.47 16 25 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.07 -0.40 7.85 -2.39 -0.02 -0.42 16 27 H 0.41 -1.15 8.60 -92.71 -0.80 -1.94 16 28 H 0.11 0.49 7.96 -2.39 -0.02 0.47 16 29 H 0.39 -2.94 8.13 -74.05 -0.60 -3.54 16 30 H -0.30 -3.41 7.11 99.48 0.71 -2.70 16 31 H -0.29 -2.42 7.11 99.48 0.71 -1.71 16 32 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 33 H 0.10 -0.32 6.39 -2.38 -0.02 -0.33 16 34 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.09 -0.38 7.86 -2.39 -0.02 -0.39 16 36 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 Total: 0.00 -13.39 323.01 -0.85 -14.23 By element: Atomic # 1 Polarization: -15.51 SS G_CDS: -0.27 Total: -15.78 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 4.96 Total: 7.56 kcal Atomic # 7 Polarization: -2.94 SS G_CDS: -3.70 Total: -6.65 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -1.52 Total: -1.51 kcal Atomic # 14 Polarization: 2.57 SS G_CDS: 2.20 Total: 4.77 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.51 Total: -2.63 kcal Total: -13.39 -0.85 -14.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.172 kcal (2) G-P(sol) polarization free energy of solvation -13.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds