Wall clock time and date at job start Mon Mar 8 2021 08:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81392 * 103.00037 * 2 1 4 4 H 1.09004 * 112.85107 * 316.19661 * 3 2 1 5 5 C 1.53782 * 113.69366 * 87.46334 * 3 2 1 6 6 C 1.53781 * 87.08529 * 139.99210 * 5 3 2 7 7 H 1.08996 * 113.69223 * 89.12647 * 6 5 3 8 8 C 1.52992 * 113.61556 * 220.01969 * 6 5 3 9 9 N 1.46499 * 109.47267 * 272.49646 * 8 6 5 10 10 C 1.39145 * 119.99936 * 180.02562 * 9 8 6 11 11 N 1.32340 * 119.72099 * 359.72332 * 10 9 8 12 12 C 1.32003 * 121.64865 * 179.75566 * 11 10 9 13 13 C 1.37989 * 120.89917 * 0.52479 * 12 11 10 14 14 C 1.50699 * 120.32736 * 179.76155 * 13 12 11 15 15 O 1.42903 * 109.47093 * 119.97572 * 14 13 12 16 16 Si 1.86307 * 109.47014 * 359.97438 * 14 13 12 17 17 C 1.38904 * 119.34896 * 359.74560 * 13 12 11 18 18 C 1.38445 * 118.48056 * 359.97438 * 17 13 12 19 19 F 1.35101 * 120.46912 * 180.02562 * 18 17 13 20 20 C 1.53781 * 87.07969 * 334.57109 * 6 5 3 21 21 H 1.09009 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47668 * 300.00179 * 1 2 3 23 23 H 1.09002 * 109.47094 * 60.00135 * 1 2 3 24 24 H 1.09003 * 113.61172 * 25.44098 * 5 3 2 25 25 H 1.08999 * 113.61616 * 254.54110 * 5 3 2 26 26 H 1.09004 * 109.47330 * 152.49550 * 8 6 5 27 27 H 1.09005 * 109.47124 * 32.49754 * 8 6 5 28 28 H 0.96999 * 119.99984 * 359.97438 * 9 8 6 29 29 H 1.07996 * 119.55602 * 180.28830 * 12 11 10 30 30 H 1.08998 * 109.47791 * 239.97875 * 14 13 12 31 31 H 0.96701 * 113.99884 * 300.00769 * 15 14 13 32 32 H 1.48500 * 109.99813 * 179.97438 * 16 14 13 33 33 H 1.48500 * 109.99651 * 301.31458 * 16 14 13 34 34 H 1.07997 * 120.76372 * 179.97438 * 17 13 12 35 35 H 1.08998 * 113.61870 * 139.98136 * 20 6 5 36 36 H 1.09005 * 113.61064 * 270.79876 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3003 2.3836 1.4068 6 6 3.5202 3.1752 0.9067 7 1 3.2654 4.1359 0.4592 8 6 4.6471 3.2796 1.9362 9 7 4.4190 4.4456 2.7934 10 6 5.3187 4.7477 3.8109 11 7 6.3758 3.9749 4.0029 12 6 7.2559 4.2287 4.9534 13 6 7.0982 5.3113 5.7943 14 6 8.1081 5.5859 6.8787 15 8 8.6875 6.8762 6.6744 16 14 9.4448 4.2893 6.8252 17 6 5.9998 6.1457 5.6314 18 6 5.0963 5.8583 4.6224 19 9 4.0142 6.6433 4.4278 20 6 3.7283 2.0520 -0.1228 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 2.5388 1.6610 2.1873 25 1 1.4450 3.0113 1.6568 26 1 5.6013 3.3888 1.4206 27 1 4.6656 2.3773 2.5474 28 1 3.6411 5.0073 2.6512 29 1 8.1089 3.5780 5.0771 30 1 7.6146 5.5590 7.8502 31 1 9.1445 6.9724 5.8276 32 1 10.4474 4.5493 7.8894 33 1 8.8510 2.9401 7.0048 34 1 5.8537 6.9991 6.2769 35 1 4.0258 2.4119 -1.1077 36 1 4.3584 1.2394 0.2390 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18360572_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:34 Heat of formation + Delta-G solvation = -8.235355 kcal Electronic energy + Delta-G solvation = -19760.719247 eV Core-core repulsion = 16481.124256 eV Total energy + Delta-G solvation = -3279.594991 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.85880 -41.40995 -40.21535 -38.10550 -36.39454 -33.24578 -31.97084 -29.98309 -29.13035 -26.88866 -26.29944 -25.20709 -23.54641 -22.84393 -20.87220 -19.33170 -18.47831 -18.32262 -17.68977 -17.31948 -17.02372 -16.78531 -16.14335 -15.97606 -15.75384 -15.52994 -15.37551 -15.16375 -14.62738 -14.34128 -14.22243 -14.16772 -13.93156 -13.62470 -13.57420 -13.44698 -13.01018 -12.61474 -12.07906 -12.00776 -11.79206 -11.63726 -11.22090 -10.84534 -10.68584 -10.65464 -10.45427 -8.75098 -8.66439 -5.08760 -0.05651 0.13920 0.71013 1.22831 1.56141 1.57983 1.93340 1.95773 2.57670 3.04763 3.21746 3.31802 3.33014 3.41555 3.50984 3.58836 3.66308 3.84841 4.02332 4.05057 4.15837 4.18420 4.23341 4.41540 4.47818 4.54812 4.60643 4.64962 4.70414 4.72420 4.74832 4.83570 4.94187 4.98275 5.22879 5.37631 5.93638 6.16118 6.52245 6.96295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.105 0.895 5 C -0.123 4.123 6 C -0.123 4.123 7 H 0.100 0.900 8 C 0.144 3.856 9 N -0.716 5.716 10 C 0.390 3.610 11 N -0.512 5.512 12 C 0.148 3.852 13 C -0.211 4.211 14 C -0.055 4.055 15 O -0.541 6.541 16 Si 0.686 3.314 17 C -0.038 4.038 18 C -0.021 4.021 19 F -0.134 7.134 20 C -0.098 4.098 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.412 0.588 29 H 0.163 0.837 30 H 0.115 0.885 31 H 0.380 0.620 32 H -0.251 1.251 33 H -0.254 1.254 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 0.394 -2.496 2.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.025 6.025 3 C -0.213 4.213 4 H 0.123 0.877 5 C -0.163 4.163 6 C -0.143 4.143 7 H 0.118 0.882 8 C 0.020 3.980 9 N -0.350 5.350 10 C 0.151 3.849 11 N -0.229 5.229 12 C -0.009 4.009 13 C -0.216 4.216 14 C -0.166 4.166 15 O -0.346 6.346 16 Si 0.587 3.413 17 C -0.064 4.064 18 C -0.048 4.048 19 F -0.113 7.113 20 C -0.137 4.137 21 H 0.119 0.881 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.249 0.751 29 H 0.179 0.821 30 H 0.133 0.867 31 H 0.227 0.773 32 H -0.176 1.176 33 H -0.178 1.178 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.103 -1.943 -2.179 3.121 hybrid contribution -2.247 2.309 0.600 3.277 sum -1.144 0.366 -1.579 1.984 Atomic orbital electron populations 1.23373 0.94143 1.06627 1.04938 1.86963 1.07562 1.10364 1.97629 1.24678 1.01096 0.94286 1.01205 0.87650 1.23411 0.98169 0.99094 0.95607 1.22773 0.95845 0.98907 0.96825 0.88202 1.21327 0.97832 0.87985 0.90815 1.44558 1.26166 1.31463 1.32766 1.18432 0.89477 0.88768 0.88176 1.67303 1.03381 1.29721 1.22494 1.22341 0.95837 0.93949 0.88785 1.20930 0.99439 0.98924 1.02339 1.24856 0.99558 0.94131 0.98077 1.86510 1.74085 1.31298 1.42701 0.94823 0.80567 0.76660 0.89212 1.21270 0.91284 0.98975 0.94860 1.18004 0.89900 0.94636 1.02224 1.91489 1.52064 1.73003 1.94755 1.22746 0.93312 0.97838 0.99838 0.88057 0.90447 0.90487 0.88428 0.90939 0.91018 0.91008 0.75096 0.82058 0.86732 0.77289 1.17612 1.17848 0.83318 0.89886 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.21 16 2 S -0.25 -0.24 22.18 -107.50 -2.38 -2.62 16 3 C -0.08 0.10 4.27 -25.92 -0.11 -0.01 16 4 H 0.11 -0.18 8.14 -51.93 -0.42 -0.61 16 5 C -0.12 0.23 7.22 -25.92 -0.19 0.04 16 6 C -0.12 0.31 3.75 -89.81 -0.34 -0.02 16 7 H 0.10 -0.31 8.14 -51.93 -0.42 -0.74 16 8 C 0.14 -0.17 5.53 -4.05 -0.02 -0.19 16 9 N -0.72 0.19 5.71 -60.34 -0.34 -0.15 16 10 C 0.39 0.59 7.49 -154.85 -1.16 -0.57 16 11 N -0.51 -0.85 9.57 -12.37 -0.12 -0.97 16 12 C 0.15 0.00 9.84 -17.57 -0.17 -0.18 16 13 C -0.21 0.05 5.40 -104.47 -0.56 -0.51 16 14 C -0.05 0.06 2.84 36.01 0.10 0.16 16 15 O -0.54 0.29 12.78 -35.23 -0.45 -0.16 16 16 Si 0.69 -1.32 29.82 -169.99 -5.07 -6.39 16 17 C -0.04 -0.03 9.75 -39.26 -0.38 -0.41 16 18 C -0.02 -0.03 7.35 -39.09 -0.29 -0.32 16 19 F -0.13 -0.29 16.65 2.25 0.04 -0.25 16 20 C -0.10 0.19 7.23 -25.92 -0.19 0.00 16 21 H 0.10 -0.14 8.14 -51.92 -0.42 -0.57 16 22 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 23 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 24 H 0.10 -0.08 7.86 -51.93 -0.41 -0.48 16 25 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 -0.01 7.84 -51.93 -0.41 -0.42 16 28 H 0.41 -0.55 7.94 -40.82 -0.32 -0.88 16 29 H 0.16 -0.37 4.88 -52.49 -0.26 -0.62 16 30 H 0.12 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.38 -1.64 8.70 45.56 0.40 -1.25 16 32 H -0.25 -0.36 7.11 56.52 0.40 0.05 16 33 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 34 H 0.15 -0.01 8.06 -52.49 -0.42 -0.44 16 35 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.10 -0.12 8.06 -51.93 -0.42 -0.54 16 LS Contribution 318.78 15.07 4.80 4.80 Total: 0.00 -5.39 318.78 -10.58 -15.97 By element: Atomic # 1 Polarization: -4.60 SS G_CDS: -4.83 Total: -9.43 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.22 Total: -0.80 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -0.46 Total: -1.12 kcal Atomic # 8 Polarization: 0.29 SS G_CDS: -0.45 Total: -0.16 kcal Atomic # 9 Polarization: -0.29 SS G_CDS: 0.04 Total: -0.25 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -5.07 Total: -6.39 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.38 Total: -2.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -5.39 -10.58 -15.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.738 kcal (2) G-P(sol) polarization free energy of solvation -5.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds