Wall clock time and date at job start Mon Mar 8 2021 08:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81392 * 103.00037 * 2 1 4 4 H 1.09004 * 112.85107 * 316.19661 * 3 2 1 5 5 C 1.53782 * 113.69366 * 87.46334 * 3 2 1 6 6 C 1.53781 * 87.08529 * 139.99210 * 5 3 2 7 7 H 1.08996 * 113.69223 * 89.12647 * 6 5 3 8 8 C 1.52992 * 113.61556 * 220.01969 * 6 5 3 9 9 N 1.46499 * 109.47267 * 272.49646 * 8 6 5 10 10 C 1.39145 * 119.99936 * 180.02562 * 9 8 6 11 11 N 1.32340 * 119.72099 * 359.72332 * 10 9 8 12 12 C 1.32003 * 121.64865 * 179.75566 * 11 10 9 13 13 C 1.37989 * 120.89917 * 0.52479 * 12 11 10 14 14 C 1.50699 * 120.32736 * 179.76155 * 13 12 11 15 15 O 1.42903 * 109.47093 * 119.97572 * 14 13 12 16 16 Si 1.86307 * 109.47014 * 359.97438 * 14 13 12 17 17 C 1.38904 * 119.34896 * 359.74560 * 13 12 11 18 18 C 1.38445 * 118.48056 * 359.97438 * 17 13 12 19 19 F 1.35101 * 120.46912 * 180.02562 * 18 17 13 20 20 C 1.53781 * 87.07969 * 334.57109 * 6 5 3 21 21 H 1.09009 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47668 * 300.00179 * 1 2 3 23 23 H 1.09002 * 109.47094 * 60.00135 * 1 2 3 24 24 H 1.09003 * 113.61172 * 25.44098 * 5 3 2 25 25 H 1.08999 * 113.61616 * 254.54110 * 5 3 2 26 26 H 1.09004 * 109.47330 * 152.49550 * 8 6 5 27 27 H 1.09005 * 109.47124 * 32.49754 * 8 6 5 28 28 H 0.96999 * 119.99984 * 359.97438 * 9 8 6 29 29 H 1.07996 * 119.55602 * 180.28830 * 12 11 10 30 30 H 1.08998 * 109.47791 * 239.97875 * 14 13 12 31 31 H 0.96701 * 113.99884 * 300.00769 * 15 14 13 32 32 H 1.48500 * 109.99813 * 179.97438 * 16 14 13 33 33 H 1.48500 * 109.99651 * 301.31458 * 16 14 13 34 34 H 1.07997 * 120.76372 * 179.97438 * 17 13 12 35 35 H 1.08998 * 113.61870 * 139.98136 * 20 6 5 36 36 H 1.09005 * 113.61064 * 270.79876 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3003 2.3836 1.4068 6 6 3.5202 3.1752 0.9067 7 1 3.2654 4.1359 0.4592 8 6 4.6471 3.2796 1.9362 9 7 4.4190 4.4456 2.7934 10 6 5.3187 4.7477 3.8109 11 7 6.3758 3.9749 4.0029 12 6 7.2559 4.2287 4.9534 13 6 7.0982 5.3113 5.7943 14 6 8.1081 5.5859 6.8787 15 8 8.6875 6.8762 6.6744 16 14 9.4448 4.2893 6.8252 17 6 5.9998 6.1457 5.6314 18 6 5.0963 5.8583 4.6224 19 9 4.0142 6.6433 4.4278 20 6 3.7283 2.0520 -0.1228 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 2.5388 1.6610 2.1873 25 1 1.4450 3.0113 1.6568 26 1 5.6013 3.3888 1.4206 27 1 4.6656 2.3773 2.5474 28 1 3.6411 5.0073 2.6512 29 1 8.1089 3.5780 5.0771 30 1 7.6146 5.5590 7.8502 31 1 9.1445 6.9724 5.8276 32 1 10.4474 4.5493 7.8894 33 1 8.8510 2.9401 7.0048 34 1 5.8537 6.9991 6.2769 35 1 4.0258 2.4119 -1.1077 36 1 4.3584 1.2394 0.2390 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18360572_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:33 Heat of formation + Delta-G solvation = -3.281263 kcal Electronic energy + Delta-G solvation = -19760.504421 eV Core-core repulsion = 16481.124256 eV Total energy + Delta-G solvation = -3279.380165 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.96040 -41.42307 -40.10927 -38.05258 -36.35970 -33.26985 -31.96443 -29.90125 -29.07254 -26.76114 -26.25855 -25.19801 -23.51083 -22.84661 -20.75749 -19.32533 -18.46564 -18.34729 -17.67848 -17.31642 -17.07121 -16.68570 -16.11041 -15.94512 -15.72760 -15.49938 -15.39135 -15.11339 -14.57531 -14.35120 -14.18284 -14.11820 -13.93426 -13.52182 -13.48321 -13.43071 -12.91606 -12.56034 -12.12939 -11.89979 -11.67808 -11.56068 -11.15903 -10.81725 -10.72983 -10.67595 -10.40723 -8.75972 -8.71985 -4.96484 -0.08843 0.10674 0.76096 1.32668 1.62039 1.66734 1.98782 2.00419 2.54581 3.01950 3.26052 3.40820 3.45381 3.50274 3.63903 3.66775 3.79460 3.86106 4.02743 4.16959 4.27559 4.29096 4.36490 4.45274 4.49093 4.65444 4.71704 4.74236 4.75899 4.82841 4.84293 4.95221 4.98050 5.05772 5.32538 5.41785 5.95511 6.18331 6.79665 6.96079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.313 6.313 3 C -0.074 4.074 4 H 0.115 0.885 5 C -0.120 4.120 6 C -0.109 4.109 7 H 0.114 0.886 8 C 0.150 3.850 9 N -0.713 5.713 10 C 0.381 3.619 11 N -0.528 5.528 12 C 0.147 3.853 13 C -0.207 4.207 14 C -0.058 4.058 15 O -0.556 6.556 16 Si 0.774 3.226 17 C -0.041 4.041 18 C -0.037 4.037 19 F -0.141 7.141 20 C -0.097 4.097 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.417 0.583 29 H 0.182 0.818 30 H 0.111 0.889 31 H 0.396 0.604 32 H -0.297 1.297 33 H -0.280 1.280 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 0.897 -2.934 3.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.085 6.085 3 C -0.202 4.202 4 H 0.133 0.867 5 C -0.160 4.160 6 C -0.129 4.129 7 H 0.132 0.868 8 C 0.026 3.974 9 N -0.346 5.346 10 C 0.142 3.858 11 N -0.246 5.246 12 C -0.010 4.010 13 C -0.212 4.212 14 C -0.169 4.169 15 O -0.364 6.364 16 Si 0.680 3.320 17 C -0.067 4.067 18 C -0.064 4.064 19 F -0.120 7.120 20 C -0.137 4.137 21 H 0.122 0.878 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.254 0.746 29 H 0.199 0.801 30 H 0.128 0.872 31 H 0.246 0.754 32 H -0.225 1.225 33 H -0.207 1.207 34 H 0.172 0.828 35 H 0.110 0.890 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.101 -1.422 -2.649 3.202 hybrid contribution -2.228 2.156 0.783 3.198 sum -1.127 0.734 -1.866 2.301 Atomic orbital electron populations 1.23373 0.91963 1.07046 1.05619 1.87149 1.10187 1.13353 1.97769 1.24739 1.01537 0.92207 1.01744 0.86710 1.23348 0.98730 0.98890 0.94985 1.22680 0.94883 0.99222 0.96102 0.86833 1.21269 0.98236 0.87202 0.90695 1.44611 1.26001 1.31587 1.32390 1.18591 0.89802 0.88847 0.88589 1.67352 1.03825 1.30110 1.23282 1.22689 0.96007 0.94089 0.88198 1.20985 0.99259 0.98616 1.02354 1.24979 0.99780 0.94521 0.97600 1.86475 1.74338 1.31427 1.44126 0.93789 0.77191 0.73848 0.87218 1.21421 0.91365 0.99264 0.94648 1.18126 0.90203 0.95055 1.02992 1.91464 1.52419 1.73206 1.94877 1.22752 0.92790 0.97721 1.00405 0.87831 0.89843 0.89656 0.89683 0.90186 0.91310 0.92172 0.74556 0.80116 0.87160 0.75399 1.22458 1.20692 0.82850 0.89013 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.23 10.76 113.37 1.22 1.45 16 2 S -0.31 -0.81 22.18 -56.49 -1.25 -2.07 16 3 C -0.07 0.19 4.27 31.12 0.13 0.33 16 4 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 5 C -0.12 0.45 7.22 31.12 0.22 0.68 16 6 C -0.11 0.60 3.75 -10.27 -0.04 0.56 16 7 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 8 C 0.15 -0.33 5.53 86.38 0.48 0.15 16 9 N -0.71 0.27 5.71 -344.81 -1.97 -1.70 16 10 C 0.38 1.28 7.49 133.08 1.00 2.28 16 11 N -0.53 -1.80 9.57 -193.03 -1.85 -3.65 16 12 C 0.15 -0.05 9.84 84.61 0.83 0.78 16 13 C -0.21 0.14 5.40 -19.76 -0.11 0.04 16 14 C -0.06 0.14 2.84 71.24 0.20 0.34 16 15 O -0.56 0.89 12.78 -148.98 -1.90 -1.01 16 16 Si 0.77 -3.22 29.82 68.60 2.05 -1.18 16 17 C -0.04 -0.06 9.75 22.48 0.22 0.15 16 18 C -0.04 -0.14 7.35 22.59 0.17 0.03 16 19 F -0.14 -0.68 16.65 44.97 0.75 0.06 16 20 C -0.10 0.39 7.23 31.12 0.22 0.61 16 21 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 23 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.08 -0.07 7.86 -2.39 -0.02 -0.09 16 25 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 27 H 0.06 0.03 7.84 -2.38 -0.02 0.01 16 28 H 0.42 -1.13 7.94 -92.71 -0.74 -1.87 16 29 H 0.18 -0.98 4.88 -2.91 -0.01 -0.99 16 30 H 0.11 -0.17 7.96 -2.39 -0.02 -0.19 16 31 H 0.40 -3.77 8.70 -74.06 -0.64 -4.42 16 32 H -0.30 -1.06 7.11 99.48 0.71 -0.35 16 33 H -0.28 -0.09 7.11 99.48 0.71 0.62 16 34 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.09 -0.16 8.06 -2.38 -0.02 -0.18 16 Total: 0.00 -13.15 318.78 0.14 -13.01 By element: Atomic # 1 Polarization: -10.62 SS G_CDS: -0.24 Total: -10.86 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.55 Total: 7.39 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -3.81 Total: -5.35 kcal Atomic # 8 Polarization: 0.89 SS G_CDS: -1.90 Total: -1.01 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.75 Total: 0.06 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.05 Total: -1.18 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.25 Total: -2.07 kcal Total: -13.15 0.14 -13.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18360572_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.731 kcal (2) G-P(sol) polarization free energy of solvation -13.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds