Wall clock time and date at job start Mon Mar 8 2021 08:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.53006 * 109.46756 * 240.00031 * 2 1 3 5 5 Si 1.86302 * 109.47242 * 120.00458 * 2 1 3 6 6 C 1.86307 * 109.46841 * 300.00072 * 5 2 1 7 7 C 1.86300 * 109.47079 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47004 * 59.99712 * 5 2 1 9 9 C 1.42900 * 113.99647 * 179.97438 * 8 5 2 10 10 C 1.53515 * 114.17139 * 149.99967 * 9 8 5 11 11 N 1.47486 * 87.93048 * 87.62429 * 10 9 8 12 12 C 1.38409 * 111.00017 * 138.70793 * 11 10 9 13 13 N 1.32492 * 119.21436 * 359.72932 * 12 11 10 14 14 C 1.32282 * 120.73507 * 179.72504 * 13 12 11 15 15 C 1.38596 * 119.19855 * 0.53903 * 14 13 12 16 16 C 1.50704 * 120.72308 * 179.75956 * 15 14 13 17 17 O 1.42900 * 109.47519 * 119.97743 * 16 15 14 18 18 Si 1.86302 * 109.46698 * 359.97348 * 16 15 14 19 19 H 1.48501 * 109.46799 * 60.00480 * 18 16 15 20 20 H 1.48500 * 109.46707 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47443 * 300.00419 * 18 16 15 22 22 C 1.38608 * 118.55699 * 359.73282 * 15 14 13 23 23 N 1.32273 * 119.20230 * 0.02562 * 22 15 14 24 24 C 1.47480 * 87.83684 * 27.00978 * 11 10 9 25 25 H 1.08999 * 109.47115 * 299.99496 * 1 2 3 26 26 H 1.09001 * 109.47264 * 60.00013 * 1 2 3 27 27 H 1.09001 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.08991 * 109.47035 * 300.00071 * 3 2 1 30 30 H 1.08999 * 109.46781 * 60.00299 * 3 2 1 31 31 H 1.08992 * 109.47359 * 300.00098 * 4 2 1 32 32 H 1.08999 * 109.46733 * 60.00495 * 4 2 1 33 33 H 1.08998 * 109.46323 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46691 * 180.02562 * 6 5 2 35 35 H 1.09005 * 109.46572 * 299.99919 * 6 5 2 36 36 H 1.08994 * 109.47470 * 59.99727 * 6 5 2 37 37 H 1.09000 * 109.46758 * 299.99789 * 7 5 2 38 38 H 1.09001 * 109.46728 * 59.99736 * 7 5 2 39 39 H 1.09000 * 109.46655 * 179.97438 * 7 5 2 40 40 H 1.09000 * 113.38831 * 16.92547 * 9 8 5 41 41 H 1.09005 * 113.47774 * 332.85878 * 10 9 8 42 42 H 1.08997 * 113.53532 * 202.40034 * 10 9 8 43 43 H 1.08005 * 120.39794 * 180.30020 * 14 13 12 44 44 H 1.08999 * 109.46581 * 239.97792 * 16 15 14 45 45 H 0.96704 * 113.99366 * 300.00479 * 17 16 15 46 46 H 1.08002 * 120.39949 * 180.02562 * 22 15 14 47 47 H 1.09005 * 113.47310 * 87.75367 * 24 11 10 48 48 H 1.08990 * 113.48150 * 218.22188 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5300 -0.0002 3.0423 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0296 -3.1818 2.6512 10 6 1.0415 -4.2789 3.0717 11 7 1.7138 -5.1769 2.1141 12 6 1.8689 -6.4445 2.6477 13 7 1.4313 -6.6877 3.8744 14 6 1.5590 -7.8897 4.4118 15 6 2.1689 -8.8963 3.6798 16 6 2.3373 -10.2767 4.2606 17 8 1.6537 -11.2257 3.4395 18 14 1.6250 -10.3174 5.9816 19 1 0.1808 -9.9758 5.9276 20 1 1.7903 -11.6778 6.5536 21 1 2.3353 -9.3313 6.8348 22 6 2.6201 -8.6059 2.4018 23 7 2.4567 -7.3842 1.9218 24 6 2.9349 -4.3713 2.3018 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.8938 -0.5138 3.9322 35 1 1.8934 1.0275 3.0423 36 1 0.4401 -0.0001 3.0423 37 1 4.3770 -1.3931 0.6306 38 1 4.3777 0.1486 1.5204 39 1 4.3774 -1.3925 2.4108 40 1 2.3948 -2.5702 3.4762 41 1 0.0077 -4.0571 2.8067 42 1 1.1528 -4.5901 4.1103 43 1 1.1960 -8.0832 5.4104 44 1 3.3973 -10.5273 4.3001 45 1 0.7037 -11.0638 3.3589 46 1 3.0992 -9.3680 1.8051 47 1 3.5523 -4.7065 3.1352 48 1 3.5057 -4.2278 1.3845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18362372_12175864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:04 Heat of formation + Delta-G solvation = -18.546456 kcal Electronic energy + Delta-G solvation = -26070.324801 eV Core-core repulsion = 22478.958113 eV Total energy + Delta-G solvation = -3591.366688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.83656 -40.96406 -38.15435 -36.85923 -36.73624 -34.91732 -33.40634 -29.78490 -29.28903 -29.11547 -27.86555 -27.47248 -27.26866 -26.23622 -25.66080 -23.33648 -21.36078 -20.29474 -19.58936 -19.10233 -18.24280 -17.73263 -16.91795 -16.67464 -16.41380 -16.19866 -15.88849 -15.46417 -15.27410 -15.00755 -14.83702 -14.74864 -14.55744 -14.42558 -14.21494 -13.83076 -13.61914 -13.44861 -13.30977 -13.28149 -12.95057 -12.93286 -12.84187 -12.71922 -12.39197 -12.38747 -12.30046 -11.96930 -11.82472 -11.74244 -11.68854 -11.47577 -11.36961 -11.16052 -10.83361 -10.38105 -10.15109 -10.08158 -9.78518 -0.37363 -0.04814 0.93796 1.26351 1.31403 1.32582 1.70747 1.74918 2.00447 2.16592 2.38786 2.50029 2.85564 3.21360 3.28326 3.41776 3.43086 3.48004 3.78338 3.97059 4.02320 4.12609 4.13812 4.17658 4.28937 4.38915 4.46273 4.52625 4.63440 4.64212 4.67754 4.70207 4.70571 4.71628 4.81434 4.87031 4.95723 5.01332 5.09532 5.11810 5.12288 5.20053 5.34344 5.41755 5.42974 5.51617 5.52558 5.58371 5.64565 6.03934 6.33812 6.97242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.284 2.716 6 C -0.511 4.511 7 C -0.510 4.510 8 O -0.590 6.590 9 C 0.091 3.909 10 C 0.006 3.994 11 N -0.397 5.397 12 C 0.461 3.539 13 N -0.542 5.542 14 C 0.166 3.834 15 C -0.250 4.250 16 C -0.067 4.067 17 O -0.535 6.535 18 Si 0.940 3.060 19 H -0.247 1.247 20 H -0.245 1.245 21 H -0.247 1.247 22 C 0.199 3.801 23 N -0.507 5.507 24 C 0.003 3.997 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.164 0.836 44 H 0.125 0.875 45 H 0.378 0.622 46 H 0.178 0.822 47 H 0.084 0.916 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 0.279 3.740 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.416 2.584 6 C -0.613 4.613 7 C -0.612 4.612 8 O -0.548 6.548 9 C 0.032 3.968 10 C -0.122 4.122 11 N -0.118 5.118 12 C 0.106 3.894 13 N -0.260 5.260 14 C -0.001 4.001 15 C -0.255 4.255 16 C -0.179 4.179 17 O -0.340 6.340 18 Si 0.762 3.238 19 H -0.171 1.171 20 H -0.168 1.168 21 H -0.170 1.170 22 C 0.031 3.969 23 N -0.222 5.222 24 C -0.124 4.124 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.181 0.819 44 H 0.142 0.858 45 H 0.226 0.774 46 H 0.195 0.805 47 H 0.103 0.897 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.877 0.639 3.284 3.458 hybrid contribution 0.194 -0.194 0.670 0.724 sum 1.071 0.445 3.953 4.120 Atomic orbital electron populations 1.21518 0.93773 1.02111 1.01758 1.25770 1.00723 1.02551 1.12666 1.21558 1.00758 0.94932 1.02145 1.21517 1.00573 1.00399 0.96686 0.76850 0.63137 0.53281 0.65148 1.27047 1.07157 1.09493 1.17555 1.27058 1.24852 1.04759 1.04542 1.85415 1.77764 1.45720 1.45919 1.22498 0.95162 0.91710 0.87424 1.24320 1.01395 0.89021 0.97465 1.66127 1.11644 0.95990 1.38037 1.22073 0.88687 0.94061 0.84573 1.68345 1.22651 1.22936 1.12074 1.22977 0.90628 0.87477 0.99042 1.22064 1.05178 0.99288 0.99014 1.24780 1.03040 0.85094 1.04947 1.86545 1.25294 1.50777 1.71382 0.85800 0.80773 0.82247 0.75023 1.17090 1.16791 1.17048 1.23180 0.89888 0.92252 0.91617 1.68218 1.16601 1.01333 1.36015 1.24380 0.92819 0.91583 1.03645 0.92726 0.92803 0.92048 0.92528 0.92488 0.92537 0.91964 0.92821 0.92728 0.91471 0.90657 0.90719 0.90746 0.90705 0.91503 0.89212 0.87684 0.86826 0.81906 0.85767 0.77437 0.80486 0.89744 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 2 C -0.37 0.09 0.53 -90.61 -0.05 0.05 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.13 -0.05 7.85 37.16 0.29 0.24 16 5 Si 1.28 -1.67 8.24 -169.99 -1.40 -3.07 16 6 C -0.51 0.63 8.64 101.05 0.87 1.50 16 7 C -0.51 0.57 8.65 101.05 0.87 1.45 16 8 O -0.59 -0.26 8.61 -35.23 -0.30 -0.57 16 9 C 0.09 -0.05 3.89 -26.20 -0.10 -0.15 16 10 C 0.01 0.00 7.21 -7.53 -0.05 -0.05 16 11 N -0.40 -1.15 6.51 -184.89 -1.20 -2.35 16 12 C 0.46 1.54 6.78 -322.81 -2.19 -0.65 16 13 N -0.54 -1.19 8.20 -13.93 -0.11 -1.30 16 14 C 0.17 0.03 9.92 -17.23 -0.17 -0.14 16 15 C -0.25 0.15 5.40 -104.35 -0.56 -0.41 16 16 C -0.07 0.16 2.85 36.01 0.10 0.26 16 17 O -0.54 0.79 12.79 -35.23 -0.45 0.34 16 18 Si 0.94 -2.31 25.15 -169.99 -4.28 -6.59 16 19 H -0.25 0.53 7.11 56.52 0.40 0.93 16 20 H -0.24 0.21 7.11 56.52 0.40 0.61 16 21 H -0.25 0.51 7.11 56.52 0.40 0.91 16 22 C 0.20 0.15 10.92 -17.23 -0.19 -0.03 16 23 N -0.51 -1.80 10.47 -13.93 -0.15 -1.94 16 24 C 0.00 0.00 7.51 -7.54 -0.06 -0.06 16 25 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 26 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.06 0.04 7.97 -51.93 -0.41 -0.37 16 28 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 0.06 7.96 -51.93 -0.41 -0.35 16 32 H 0.05 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 34 H 0.07 -0.12 7.31 -51.93 -0.38 -0.50 16 35 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 37 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 38 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.09 -0.28 6.50 -51.93 -0.34 -0.62 16 41 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 42 H 0.11 -0.02 6.62 -51.93 -0.34 -0.36 16 43 H 0.16 -0.33 5.04 -52.48 -0.26 -0.60 16 44 H 0.12 -0.44 7.96 -51.93 -0.41 -0.85 16 45 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 46 H 0.18 -0.23 8.06 -52.49 -0.42 -0.66 16 47 H 0.08 -0.06 7.89 -51.93 -0.41 -0.47 16 48 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 LS Contribution 382.15 15.07 5.76 5.76 Total: 0.00 -6.48 382.15 -10.34 -16.83 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -7.56 Total: -9.76 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.65 Total: 2.65 kcal Atomic # 7 Polarization: -4.13 SS G_CDS: -1.46 Total: -5.59 kcal Atomic # 8 Polarization: 0.52 SS G_CDS: -0.75 Total: -0.23 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: -5.68 Total: -9.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -6.48 -10.34 -16.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_12175864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.718 kcal (2) G-P(sol) polarization free energy of solvation -6.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds