Wall clock time and date at job start Mon Mar 8 2021 08:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.53006 * 109.46756 * 240.00031 * 2 1 3 5 5 Si 1.86302 * 109.47242 * 120.00458 * 2 1 3 6 6 C 1.86307 * 109.46841 * 300.00072 * 5 2 1 7 7 C 1.86300 * 109.47079 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47004 * 59.99712 * 5 2 1 9 9 C 1.42900 * 113.99647 * 179.97438 * 8 5 2 10 10 C 1.53515 * 114.17139 * 149.99967 * 9 8 5 11 11 N 1.47486 * 87.93048 * 87.62429 * 10 9 8 12 12 C 1.38409 * 111.00017 * 138.70793 * 11 10 9 13 13 N 1.32492 * 119.21436 * 359.72932 * 12 11 10 14 14 C 1.32282 * 120.73507 * 179.72504 * 13 12 11 15 15 C 1.38596 * 119.19855 * 0.53903 * 14 13 12 16 16 C 1.50704 * 120.72308 * 179.75956 * 15 14 13 17 17 O 1.42900 * 109.47519 * 119.97743 * 16 15 14 18 18 Si 1.86302 * 109.46698 * 359.97348 * 16 15 14 19 19 H 1.48501 * 109.46799 * 60.00480 * 18 16 15 20 20 H 1.48500 * 109.46707 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47443 * 300.00419 * 18 16 15 22 22 C 1.38608 * 118.55699 * 359.73282 * 15 14 13 23 23 N 1.32273 * 119.20230 * 0.02562 * 22 15 14 24 24 C 1.47480 * 87.83684 * 27.00978 * 11 10 9 25 25 H 1.08999 * 109.47115 * 299.99496 * 1 2 3 26 26 H 1.09001 * 109.47264 * 60.00013 * 1 2 3 27 27 H 1.09001 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.08991 * 109.47035 * 300.00071 * 3 2 1 30 30 H 1.08999 * 109.46781 * 60.00299 * 3 2 1 31 31 H 1.08992 * 109.47359 * 300.00098 * 4 2 1 32 32 H 1.08999 * 109.46733 * 60.00495 * 4 2 1 33 33 H 1.08998 * 109.46323 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.46691 * 180.02562 * 6 5 2 35 35 H 1.09005 * 109.46572 * 299.99919 * 6 5 2 36 36 H 1.08994 * 109.47470 * 59.99727 * 6 5 2 37 37 H 1.09000 * 109.46758 * 299.99789 * 7 5 2 38 38 H 1.09001 * 109.46728 * 59.99736 * 7 5 2 39 39 H 1.09000 * 109.46655 * 179.97438 * 7 5 2 40 40 H 1.09000 * 113.38831 * 16.92547 * 9 8 5 41 41 H 1.09005 * 113.47774 * 332.85878 * 10 9 8 42 42 H 1.08997 * 113.53532 * 202.40034 * 10 9 8 43 43 H 1.08005 * 120.39794 * 180.30020 * 14 13 12 44 44 H 1.08999 * 109.46581 * 239.97792 * 16 15 14 45 45 H 0.96704 * 113.99366 * 300.00479 * 17 16 15 46 46 H 1.08002 * 120.39949 * 180.02562 * 22 15 14 47 47 H 1.09005 * 113.47310 * 87.75367 * 24 11 10 48 48 H 1.08990 * 113.48150 * 218.22188 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5300 -0.0002 3.0423 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0296 -3.1818 2.6512 10 6 1.0415 -4.2789 3.0717 11 7 1.7138 -5.1769 2.1141 12 6 1.8689 -6.4445 2.6477 13 7 1.4313 -6.6877 3.8744 14 6 1.5590 -7.8897 4.4118 15 6 2.1689 -8.8963 3.6798 16 6 2.3373 -10.2767 4.2606 17 8 1.6537 -11.2257 3.4395 18 14 1.6250 -10.3174 5.9816 19 1 0.1808 -9.9758 5.9276 20 1 1.7903 -11.6778 6.5536 21 1 2.3353 -9.3313 6.8348 22 6 2.6201 -8.6059 2.4018 23 7 2.4567 -7.3842 1.9218 24 6 2.9349 -4.3713 2.3018 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.8938 -0.5138 3.9322 35 1 1.8934 1.0275 3.0423 36 1 0.4401 -0.0001 3.0423 37 1 4.3770 -1.3931 0.6306 38 1 4.3777 0.1486 1.5204 39 1 4.3774 -1.3925 2.4108 40 1 2.3948 -2.5702 3.4762 41 1 0.0077 -4.0571 2.8067 42 1 1.1528 -4.5901 4.1103 43 1 1.1960 -8.0832 5.4104 44 1 3.3973 -10.5273 4.3001 45 1 0.7037 -11.0638 3.3589 46 1 3.0992 -9.3680 1.8051 47 1 3.5523 -4.7065 3.1352 48 1 3.5057 -4.2278 1.3845 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18362372_12175864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:04 Heat of formation + Delta-G solvation = -14.534284 kcal Electronic energy + Delta-G solvation = -26070.150820 eV Core-core repulsion = 22478.958113 eV Total energy + Delta-G solvation = -3591.192707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87307 -40.96382 -38.03693 -36.84007 -36.71191 -34.98610 -33.38750 -29.74759 -29.20573 -29.04657 -27.82325 -27.47175 -27.25024 -26.17113 -25.68032 -23.32486 -21.33933 -20.27830 -19.58417 -19.11269 -18.16702 -17.69621 -16.93013 -16.60319 -16.34456 -16.09343 -15.86562 -15.43816 -15.25163 -14.95529 -14.80908 -14.75612 -14.53455 -14.37591 -14.16654 -13.77766 -13.55049 -13.33401 -13.23544 -13.15549 -12.94304 -12.91234 -12.82797 -12.63905 -12.37656 -12.25165 -12.22082 -12.02204 -11.75397 -11.70758 -11.67309 -11.43796 -11.34762 -11.14431 -10.76059 -10.30030 -10.13102 -10.04171 -9.82017 -0.40628 -0.07948 1.12614 1.43906 1.46206 1.49659 1.78774 1.92181 2.12988 2.16574 2.44662 2.47755 2.86077 3.30900 3.37055 3.45395 3.48704 3.57378 3.86070 4.04020 4.07492 4.14225 4.15140 4.21932 4.33144 4.46941 4.53096 4.58841 4.63487 4.69078 4.78756 4.80699 4.82264 4.83713 4.84514 4.85460 4.94684 5.01992 5.10920 5.10964 5.11146 5.22929 5.36220 5.42465 5.46611 5.51271 5.62240 5.64615 5.68180 6.00230 6.63082 6.90775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.312 2.688 6 C -0.514 4.514 7 C -0.515 4.515 8 O -0.610 6.610 9 C 0.095 3.905 10 C 0.006 3.994 11 N -0.425 5.425 12 C 0.446 3.554 13 N -0.551 5.551 14 C 0.158 3.842 15 C -0.237 4.237 16 C -0.062 4.062 17 O -0.548 6.548 18 Si 0.973 3.027 19 H -0.251 1.251 20 H -0.267 1.267 21 H -0.249 1.249 22 C 0.190 3.810 23 N -0.537 5.537 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.184 0.816 44 H 0.138 0.862 45 H 0.389 0.611 46 H 0.193 0.807 47 H 0.094 0.906 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 0.312 5.054 5.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.443 2.557 6 C -0.617 4.617 7 C -0.617 4.617 8 O -0.568 6.568 9 C 0.037 3.963 10 C -0.122 4.122 11 N -0.146 5.146 12 C 0.091 3.909 13 N -0.270 5.270 14 C -0.009 4.009 15 C -0.242 4.242 16 C -0.174 4.174 17 O -0.355 6.355 18 Si 0.796 3.204 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.172 1.172 22 C 0.023 3.977 23 N -0.253 5.253 24 C -0.125 4.125 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.139 0.861 43 H 0.201 0.799 44 H 0.156 0.844 45 H 0.239 0.761 46 H 0.210 0.790 47 H 0.113 0.887 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.372 0.680 4.578 4.827 hybrid contribution 0.011 -0.277 0.234 0.363 sum 1.383 0.403 4.812 5.023 Atomic orbital electron populations 1.21540 0.94371 1.01615 1.01865 1.25952 1.00325 1.03110 1.13189 1.21599 1.01311 0.94568 1.02246 1.21534 1.01014 0.99854 0.96980 0.76349 0.62727 0.52332 0.64263 1.27057 1.06985 1.09861 1.17755 1.27099 1.24854 1.05094 1.04694 1.85402 1.78140 1.46599 1.46650 1.22618 0.94208 0.91698 0.87796 1.24352 1.01129 0.89220 0.97481 1.66140 1.13025 0.96411 1.39053 1.22193 0.89329 0.94287 0.85076 1.68357 1.22944 1.23896 1.11781 1.23392 0.90439 0.87161 0.99876 1.22197 1.03860 0.99877 0.98290 1.24868 1.03951 0.83870 1.04690 1.86522 1.26452 1.50974 1.71549 0.85331 0.80269 0.80595 0.74191 1.17434 1.19204 1.17230 1.23515 0.89936 0.91832 0.92441 1.68197 1.17719 1.02413 1.37015 1.24439 0.92504 0.91778 1.03757 0.91832 0.93506 0.92827 0.91736 0.93287 0.91590 0.92924 0.93485 0.92052 0.90504 0.90219 0.91048 0.91352 0.90271 0.90665 0.86185 0.88487 0.86145 0.79945 0.84425 0.76132 0.78972 0.88748 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.18 7.85 71.98 0.56 0.38 16 2 C -0.38 -0.01 0.53 -10.79 -0.01 -0.01 16 3 C -0.14 0.18 7.85 71.98 0.56 0.74 16 4 C -0.14 -0.26 7.85 71.98 0.56 0.30 16 5 Si 1.31 -3.75 8.24 68.60 0.57 -3.18 16 6 C -0.51 1.84 8.64 113.37 0.98 2.82 16 7 C -0.52 1.49 8.65 113.37 0.98 2.47 16 8 O -0.61 -0.77 8.61 -148.98 -1.28 -2.05 16 9 C 0.09 -0.11 3.89 30.94 0.12 0.01 16 10 C 0.01 0.01 7.21 83.58 0.60 0.61 16 11 N -0.42 -2.91 6.51 -739.25 -4.81 -7.73 16 12 C 0.45 3.39 6.78 261.49 1.77 5.16 16 13 N -0.55 -2.58 8.20 -197.98 -1.62 -4.21 16 14 C 0.16 0.00 9.92 84.71 0.84 0.84 16 15 C -0.24 0.38 5.40 -19.69 -0.11 0.28 16 16 C -0.06 0.35 2.85 71.24 0.20 0.55 16 17 O -0.55 2.01 12.79 -148.98 -1.91 0.10 16 18 Si 0.97 -5.55 25.15 68.60 1.73 -3.82 16 19 H -0.25 1.30 7.11 99.48 0.71 2.01 16 20 H -0.27 0.48 7.11 99.48 0.71 1.18 16 21 H -0.25 1.32 7.11 99.48 0.71 2.03 16 22 C 0.19 0.34 10.92 84.71 0.93 1.27 16 23 N -0.54 -4.34 10.47 -197.98 -2.07 -6.41 16 24 C 0.00 0.00 7.51 83.58 0.63 0.63 16 25 H 0.06 -0.05 7.79 -2.39 -0.02 -0.06 16 26 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.05 0.15 7.97 -2.39 -0.02 0.13 16 28 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 29 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 0.19 7.96 -2.39 -0.02 0.17 16 32 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.01 7.79 -2.39 -0.02 0.00 16 34 H 0.08 -0.41 7.31 -2.39 -0.02 -0.43 16 35 H 0.08 -0.33 7.79 -2.38 -0.02 -0.35 16 36 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 37 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 38 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 39 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 40 H 0.12 -0.92 6.50 -2.39 -0.02 -0.94 16 41 H 0.10 0.27 8.14 -2.38 -0.02 0.26 16 42 H 0.12 -0.01 6.62 -2.39 -0.02 -0.02 16 43 H 0.18 -0.91 5.04 -2.91 -0.01 -0.93 16 44 H 0.14 -1.14 7.96 -2.39 -0.02 -1.16 16 45 H 0.39 -3.57 8.70 -74.05 -0.64 -4.21 16 46 H 0.19 -0.50 8.06 -2.91 -0.02 -0.53 16 47 H 0.09 -0.11 7.89 -2.38 -0.02 -0.13 16 48 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 Total: 0.00 -15.52 382.15 0.28 -15.24 By element: Atomic # 1 Polarization: -5.05 SS G_CDS: 1.05 Total: -4.00 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 8.63 Total: 16.05 kcal Atomic # 7 Polarization: -9.83 SS G_CDS: -8.51 Total: -18.34 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: -3.19 Total: -1.95 kcal Atomic # 14 Polarization: -9.29 SS G_CDS: 2.29 Total: -7.00 kcal Total: -15.52 0.28 -15.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_12175864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.706 kcal (2) G-P(sol) polarization free energy of solvation -15.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds