Wall clock time and date at job start Mon Mar 8 2021 08:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.52997 * 109.46974 * 240.00066 * 2 1 3 5 5 Si 1.86299 * 109.47171 * 119.99818 * 2 1 3 6 6 C 1.86301 * 109.47106 * 60.00205 * 5 2 1 7 7 C 1.86295 * 109.47206 * 299.99893 * 5 2 1 8 8 O 1.63108 * 109.47052 * 180.02562 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.53937 * 113.72945 * 248.76304 * 9 8 5 11 11 N 1.48195 * 86.09823 * 221.95608 * 10 9 8 12 12 C 1.38608 * 111.06544 * 137.52105 * 11 10 9 13 13 N 1.29683 * 124.95329 * 260.26249 * 12 11 10 14 14 C 1.32120 * 116.86994 * 179.81898 * 13 12 11 15 15 C 1.33324 * 114.57736 * 0.46854 * 14 13 12 16 16 C 1.50698 * 125.95224 * 179.75248 * 15 14 13 17 17 O 1.42896 * 109.47412 * 245.00189 * 16 15 14 18 18 Si 1.86301 * 109.47165 * 5.00289 * 16 15 14 19 19 H 1.48508 * 109.46893 * 59.99898 * 18 16 15 20 20 H 1.48495 * 109.47027 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47134 * 299.99934 * 18 16 15 22 22 S 1.70965 * 124.94616 * 80.57082 * 12 11 10 23 23 C 1.47964 * 90.79793 * 24.60294 * 11 10 9 24 24 H 1.09001 * 109.46611 * 300.00043 * 1 2 3 25 25 H 1.08988 * 109.47066 * 60.00307 * 1 2 3 26 26 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47289 * 300.00299 * 3 2 1 29 29 H 1.09000 * 109.47611 * 59.99728 * 3 2 1 30 30 H 1.09000 * 109.47140 * 299.99606 * 4 2 1 31 31 H 1.09001 * 109.47375 * 59.99624 * 4 2 1 32 32 H 1.09002 * 109.47045 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 34 34 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 35 35 H 1.09004 * 109.47198 * 59.99853 * 6 5 2 36 36 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 37 37 H 1.08996 * 109.47670 * 299.99957 * 7 5 2 38 38 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 39 39 H 1.09003 * 112.93744 * 20.33249 * 9 8 5 40 40 H 1.08994 * 113.76034 * 336.23771 * 10 9 8 41 41 H 1.09003 * 113.75585 * 107.60676 * 10 9 8 42 42 H 1.07999 * 122.71311 * 180.22562 * 14 13 12 43 43 H 1.08999 * 109.47082 * 125.00289 * 16 15 14 44 44 H 0.96710 * 113.99988 * 59.99932 * 17 16 15 45 45 H 1.08998 * 113.75949 * 221.08200 * 23 11 10 46 46 H 1.09001 * 113.85917 * 89.72905 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5301 -2.6347 1.5212 7 6 1.5301 0.0001 3.0422 8 8 3.7822 -0.8776 1.5215 9 6 4.3634 -1.5307 2.6518 10 6 5.0811 -0.5726 3.6195 11 7 6.1391 -1.6073 3.6988 12 6 7.4005 -1.0343 3.6560 13 7 8.1518 -0.9697 2.6009 14 6 9.3275 -0.3833 2.7401 15 6 9.5843 0.0590 3.9713 16 6 10.8432 0.7582 4.4156 17 8 11.5304 -0.0569 5.3670 18 14 11.9432 1.0532 2.9411 19 1 11.2290 1.9004 1.9524 20 1 13.1834 1.7427 3.3789 21 1 12.2936 -0.2479 2.3168 22 16 8.1957 -0.3164 4.9883 23 6 5.7512 -2.1351 2.3721 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.4401 -2.6347 1.5212 34 1 1.8939 -3.1486 2.4110 35 1 1.8935 -3.1485 0.6312 36 1 1.8939 -0.5135 3.9322 37 1 1.8934 1.0277 3.0423 38 1 0.4401 0.0000 3.0423 39 1 3.6764 -2.2188 3.1445 40 1 5.4097 0.3567 3.1543 41 1 4.5482 -0.4150 4.5572 42 1 10.0259 -0.2747 1.9234 43 1 10.5860 1.7132 4.8738 44 1 11.7905 -0.9241 5.0270 45 1 5.7528 -3.2236 2.3149 46 1 6.2754 -1.6649 1.5400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18362372_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:24 Heat of formation + Delta-G solvation = -40.138012 kcal Electronic energy + Delta-G solvation = -24472.192552 eV Core-core repulsion = 21034.467742 eV Total energy + Delta-G solvation = -3437.724810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03843 -40.14439 -37.95777 -36.90868 -36.80035 -32.36576 -29.74835 -29.31712 -29.16284 -27.91554 -27.57767 -27.33331 -26.09013 -24.49812 -21.87471 -20.45987 -20.34899 -19.87532 -18.55266 -17.79948 -17.64531 -16.62464 -16.34956 -16.18406 -15.94005 -15.78281 -15.40259 -14.93326 -14.87581 -14.58694 -14.47565 -14.39355 -14.18358 -13.98301 -13.62557 -13.48957 -13.31888 -13.17013 -13.02906 -12.98018 -12.97246 -12.60304 -12.45237 -12.42850 -12.20854 -11.99616 -11.81445 -11.73662 -11.55864 -11.34729 -11.22529 -10.62929 -10.62494 -10.43742 -10.25876 -10.12820 -9.52247 -0.44705 0.02978 0.62773 1.22123 1.31345 1.35817 1.43153 1.64467 1.66526 1.84347 1.96615 2.34283 2.60426 3.09647 3.30077 3.37261 3.66363 3.76019 3.82538 4.07367 4.07795 4.17808 4.24209 4.36705 4.41857 4.48730 4.53882 4.61823 4.65547 4.67067 4.67732 4.68204 4.74529 4.76877 4.81156 4.95501 4.95962 5.06090 5.06465 5.15310 5.29639 5.36686 5.38328 5.46355 5.49006 5.54493 5.67233 6.38500 6.59994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.374 4.374 3 C -0.134 4.134 4 C -0.135 4.135 5 Si 1.281 2.719 6 C -0.510 4.510 7 C -0.510 4.510 8 O -0.608 6.608 9 C 0.088 3.912 10 C -0.006 4.006 11 N -0.409 5.409 12 C 0.183 3.817 13 N -0.500 5.500 14 C 0.058 3.942 15 C -0.277 4.277 16 C -0.044 4.044 17 O -0.536 6.536 18 Si 0.959 3.041 19 H -0.246 1.246 20 H -0.246 1.246 21 H -0.247 1.247 22 S 0.201 5.799 23 C 0.020 3.980 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.174 0.826 43 H 0.122 0.878 44 H 0.379 0.621 45 H 0.103 0.897 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 0.494 0.243 1.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.418 4.418 3 C -0.191 4.191 4 C -0.192 4.192 5 Si 1.413 2.587 6 C -0.612 4.612 7 C -0.612 4.612 8 O -0.565 6.565 9 C 0.030 3.970 10 C -0.134 4.134 11 N -0.132 5.132 12 C -0.184 4.184 13 N -0.219 5.219 14 C -0.095 4.095 15 C -0.399 4.399 16 C -0.156 4.156 17 O -0.341 6.341 18 Si 0.778 3.222 19 H -0.169 1.169 20 H -0.169 1.169 21 H -0.170 1.170 22 S 0.457 5.543 23 C -0.109 4.109 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.190 0.810 43 H 0.140 0.860 44 H 0.227 0.773 45 H 0.121 0.879 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.900 0.732 0.910 1.474 hybrid contribution -0.176 -0.159 -1.154 1.178 sum -1.077 0.573 -0.245 1.244 Atomic orbital electron populations 1.21558 0.93888 1.01785 1.02174 1.25780 1.00232 1.03082 1.12692 1.21513 1.01091 0.94706 1.01820 1.21516 1.01163 0.99729 0.96756 0.76847 0.51479 0.65206 0.65172 1.27035 1.07286 1.22308 1.04602 1.27053 1.07296 1.09291 1.17526 1.85497 1.48935 1.75787 1.46313 1.23461 0.94827 0.93410 0.85322 1.24859 0.91501 0.95612 1.01426 1.66069 0.96844 1.20089 1.30166 1.25670 0.98879 1.00752 0.93143 1.66846 1.05940 1.20171 1.28950 1.21482 0.94112 0.97484 0.96410 1.26498 1.03127 1.12644 0.97633 1.24482 0.91555 0.96077 1.03535 1.86541 1.76383 1.31440 1.39714 0.85587 0.79226 0.82053 0.75318 1.16902 1.16885 1.17024 1.84109 1.07041 1.51770 1.11422 1.24375 0.93189 1.02582 0.90783 0.92506 0.92477 0.92491 0.92227 0.92772 0.92695 0.92656 0.92782 0.92146 0.90615 0.91393 0.90741 0.91373 0.90849 0.90644 0.88138 0.88699 0.87358 0.80963 0.86044 0.77343 0.87854 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 7.85 37.16 0.29 0.42 16 2 C -0.37 0.25 0.53 -90.62 -0.05 0.20 16 3 C -0.13 0.03 7.85 37.16 0.29 0.32 16 4 C -0.13 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.28 -2.11 8.28 -169.99 -1.41 -3.52 16 6 C -0.51 0.65 8.63 101.05 0.87 1.52 16 7 C -0.51 0.77 8.65 101.05 0.87 1.65 16 8 O -0.61 0.16 8.58 -35.23 -0.30 -0.14 16 9 C 0.09 -0.07 3.71 -25.80 -0.10 -0.17 16 10 C -0.01 0.00 7.78 -2.63 -0.02 -0.02 16 11 N -0.41 -0.45 6.35 -178.87 -1.14 -1.59 16 12 C 0.18 0.40 6.41 -87.69 -0.56 -0.16 16 13 N -0.50 -1.51 8.97 -15.21 -0.14 -1.64 16 14 C 0.06 0.08 10.07 -19.14 -0.19 -0.11 16 15 C -0.28 -0.17 5.92 -36.03 -0.21 -0.38 16 16 C -0.04 0.04 3.08 36.00 0.11 0.15 16 17 O -0.54 0.08 12.88 -35.23 -0.45 -0.38 16 18 Si 0.96 -1.36 25.78 -169.99 -4.38 -5.74 16 19 H -0.25 0.18 7.11 56.52 0.40 0.58 16 20 H -0.25 0.04 7.11 56.52 0.40 0.45 16 21 H -0.25 0.30 7.11 56.52 0.40 0.70 16 22 S 0.20 0.21 23.21 -107.50 -2.50 -2.29 16 23 C 0.02 0.01 7.57 -2.76 -0.02 -0.01 16 24 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 25 H 0.06 -0.03 8.14 -51.94 -0.42 -0.45 16 26 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 27 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 28 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 30 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 31 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 33 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 34 H 0.07 -0.11 7.25 -51.93 -0.38 -0.49 16 35 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 37 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 39 H 0.10 -0.27 6.44 -51.93 -0.33 -0.60 16 40 H 0.09 -0.01 7.91 -51.93 -0.41 -0.42 16 41 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.17 -0.06 5.87 -52.49 -0.31 -0.37 16 43 H 0.12 -0.21 7.96 -51.93 -0.41 -0.63 16 44 H 0.38 -1.22 8.70 45.56 0.40 -0.83 16 45 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 46 H 0.11 0.22 6.97 -51.93 -0.36 -0.14 16 LS Contribution 379.28 15.07 5.72 5.72 Total: 0.00 -5.09 379.28 -10.21 -15.30 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -7.19 Total: -9.44 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 1.58 Total: 3.72 kcal Atomic # 7 Polarization: -1.96 SS G_CDS: -1.27 Total: -3.23 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -0.76 Total: -0.52 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: -5.79 Total: -9.26 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.50 Total: -2.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -5.09 -10.21 -15.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.836 kcal (2) G-P(sol) polarization free energy of solvation -5.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds