Wall clock time and date at job start Mon Mar 8 2021 08:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.52997 * 109.46974 * 240.00066 * 2 1 3 5 5 Si 1.86299 * 109.47171 * 119.99818 * 2 1 3 6 6 C 1.86301 * 109.47106 * 60.00205 * 5 2 1 7 7 C 1.86295 * 109.47206 * 299.99893 * 5 2 1 8 8 O 1.63108 * 109.47052 * 180.02562 * 5 2 1 9 9 C 1.42899 * 113.99928 * 180.02562 * 8 5 2 10 10 C 1.53937 * 113.72945 * 248.76304 * 9 8 5 11 11 N 1.48195 * 86.09823 * 221.95608 * 10 9 8 12 12 C 1.38608 * 111.06544 * 137.52105 * 11 10 9 13 13 N 1.29683 * 124.95329 * 260.26249 * 12 11 10 14 14 C 1.32120 * 116.86994 * 179.81898 * 13 12 11 15 15 C 1.33324 * 114.57736 * 0.46854 * 14 13 12 16 16 C 1.50698 * 125.95224 * 179.75248 * 15 14 13 17 17 O 1.42896 * 109.47412 * 245.00189 * 16 15 14 18 18 Si 1.86301 * 109.47165 * 5.00289 * 16 15 14 19 19 H 1.48508 * 109.46893 * 59.99898 * 18 16 15 20 20 H 1.48495 * 109.47027 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47134 * 299.99934 * 18 16 15 22 22 S 1.70965 * 124.94616 * 80.57082 * 12 11 10 23 23 C 1.47964 * 90.79793 * 24.60294 * 11 10 9 24 24 H 1.09001 * 109.46611 * 300.00043 * 1 2 3 25 25 H 1.08988 * 109.47066 * 60.00307 * 1 2 3 26 26 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47289 * 300.00299 * 3 2 1 29 29 H 1.09000 * 109.47611 * 59.99728 * 3 2 1 30 30 H 1.09000 * 109.47140 * 299.99606 * 4 2 1 31 31 H 1.09001 * 109.47375 * 59.99624 * 4 2 1 32 32 H 1.09002 * 109.47045 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47148 * 299.99722 * 6 5 2 34 34 H 1.09001 * 109.46900 * 179.97438 * 6 5 2 35 35 H 1.09004 * 109.47198 * 59.99853 * 6 5 2 36 36 H 1.09001 * 109.47207 * 180.02562 * 7 5 2 37 37 H 1.08996 * 109.47670 * 299.99957 * 7 5 2 38 38 H 1.09002 * 109.47039 * 60.00283 * 7 5 2 39 39 H 1.09003 * 112.93744 * 20.33249 * 9 8 5 40 40 H 1.08994 * 113.76034 * 336.23771 * 10 9 8 41 41 H 1.09003 * 113.75585 * 107.60676 * 10 9 8 42 42 H 1.07999 * 122.71311 * 180.22562 * 14 13 12 43 43 H 1.08999 * 109.47082 * 125.00289 * 16 15 14 44 44 H 0.96710 * 113.99988 * 59.99932 * 17 16 15 45 45 H 1.08998 * 113.75949 * 221.08200 * 23 11 10 46 46 H 1.09001 * 113.85917 * 89.72905 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5301 -2.6347 1.5212 7 6 1.5301 0.0001 3.0422 8 8 3.7822 -0.8776 1.5215 9 6 4.3634 -1.5307 2.6518 10 6 5.0811 -0.5726 3.6195 11 7 6.1391 -1.6073 3.6988 12 6 7.4005 -1.0343 3.6560 13 7 8.1518 -0.9697 2.6009 14 6 9.3275 -0.3833 2.7401 15 6 9.5843 0.0590 3.9713 16 6 10.8432 0.7582 4.4156 17 8 11.5304 -0.0569 5.3670 18 14 11.9432 1.0532 2.9411 19 1 11.2290 1.9004 1.9524 20 1 13.1834 1.7427 3.3789 21 1 12.2936 -0.2479 2.3168 22 16 8.1957 -0.3164 4.9883 23 6 5.7512 -2.1351 2.3721 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.4401 -2.6347 1.5212 34 1 1.8939 -3.1486 2.4110 35 1 1.8935 -3.1485 0.6312 36 1 1.8939 -0.5135 3.9322 37 1 1.8934 1.0277 3.0423 38 1 0.4401 0.0000 3.0423 39 1 3.6764 -2.2188 3.1445 40 1 5.4097 0.3567 3.1543 41 1 4.5482 -0.4150 4.5572 42 1 10.0259 -0.2747 1.9234 43 1 10.5860 1.7132 4.8738 44 1 11.7905 -0.9241 5.0270 45 1 5.7528 -3.2236 2.3149 46 1 6.2754 -1.6649 1.5400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18362372_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:23 Heat of formation + Delta-G solvation = -35.068777 kcal Electronic energy + Delta-G solvation = -24471.972734 eV Core-core repulsion = 21034.467742 eV Total energy + Delta-G solvation = -3437.504992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05096 -40.17372 -37.91930 -36.85875 -36.75563 -32.38961 -29.71045 -29.22887 -29.06694 -27.84506 -27.54521 -27.27716 -26.09138 -24.52917 -21.84688 -20.43652 -20.34875 -19.89881 -18.50011 -17.78082 -17.64312 -16.62677 -16.31993 -16.15972 -15.90562 -15.74853 -15.36605 -14.88364 -14.84119 -14.57780 -14.43979 -14.35036 -14.18850 -13.88248 -13.54571 -13.35942 -13.17612 -13.11179 -13.02123 -12.95442 -12.91854 -12.53798 -12.40035 -12.38560 -12.16477 -11.95910 -11.74559 -11.68988 -11.48660 -11.28179 -11.23828 -10.71335 -10.59157 -10.33007 -10.32485 -10.05972 -9.57247 -0.51316 -0.01276 0.57674 1.28502 1.42789 1.46332 1.52477 1.58067 1.77350 1.91647 2.11621 2.44735 2.61283 3.11245 3.37862 3.44943 3.67609 3.83735 3.89849 4.12157 4.12500 4.18908 4.27249 4.42576 4.45768 4.56197 4.59553 4.66615 4.71684 4.77387 4.80382 4.80728 4.82461 4.83503 4.84060 4.93960 5.00073 5.09117 5.09387 5.21217 5.34706 5.40692 5.44965 5.51369 5.61851 5.63661 5.67329 6.51490 6.59348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.384 4.384 3 C -0.137 4.137 4 C -0.137 4.137 5 Si 1.310 2.690 6 C -0.517 4.517 7 C -0.514 4.514 8 O -0.622 6.622 9 C 0.092 3.908 10 C -0.007 4.007 11 N -0.414 5.414 12 C 0.172 3.828 13 N -0.523 5.523 14 C 0.044 3.956 15 C -0.271 4.271 16 C -0.045 4.045 17 O -0.549 6.549 18 Si 0.996 3.004 19 H -0.255 1.255 20 H -0.262 1.262 21 H -0.249 1.249 22 S 0.207 5.793 23 C 0.014 3.986 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.185 0.815 43 H 0.131 0.869 44 H 0.391 0.609 45 H 0.110 0.890 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 0.281 1.113 1.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.426 4.426 3 C -0.194 4.194 4 C -0.195 4.195 5 Si 1.441 2.559 6 C -0.619 4.619 7 C -0.617 4.617 8 O -0.580 6.580 9 C 0.034 3.966 10 C -0.135 4.135 11 N -0.137 5.137 12 C -0.196 4.196 13 N -0.243 5.243 14 C -0.108 4.108 15 C -0.394 4.394 16 C -0.157 4.157 17 O -0.356 6.356 18 Si 0.817 3.183 19 H -0.179 1.179 20 H -0.186 1.186 21 H -0.172 1.172 22 S 0.462 5.538 23 C -0.116 4.116 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.202 0.798 43 H 0.148 0.852 44 H 0.241 0.759 45 H 0.129 0.871 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.292 0.512 1.766 2.248 hybrid contribution -0.036 -0.084 -1.441 1.444 sum -1.328 0.429 0.325 1.433 Atomic orbital electron populations 1.21603 0.93644 1.02307 1.02232 1.25950 1.00561 1.02836 1.13241 1.21539 1.00735 0.95238 1.01876 1.21546 1.00815 1.00180 0.96924 0.76334 0.50634 0.64655 0.64271 1.27097 1.07605 1.22450 1.04742 1.27080 1.07577 1.09232 1.17771 1.85488 1.49794 1.75998 1.46706 1.23547 0.94580 0.93435 0.85080 1.24945 0.91077 0.95021 1.02449 1.66110 0.96770 1.20629 1.30227 1.25879 0.99319 1.00980 0.93375 1.66858 1.06689 1.21012 1.29730 1.21719 0.94118 0.97794 0.97198 1.26689 1.03342 1.12091 0.97271 1.24625 0.90978 0.96173 1.03929 1.86511 1.76357 1.32396 1.40326 0.85042 0.77734 0.81262 0.74260 1.17921 1.18622 1.17222 1.84022 1.07125 1.51542 1.11120 1.24378 0.94091 1.02952 0.90131 0.91662 0.93262 0.91750 0.92812 0.93476 0.91910 0.92002 0.93461 0.92725 0.90267 0.90709 0.91192 0.90550 0.91061 0.90318 0.85925 0.89569 0.85369 0.79826 0.85161 0.75937 0.87136 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.27 7.85 71.98 0.56 0.83 16 2 C -0.38 0.39 0.53 -10.79 -0.01 0.38 16 3 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 4 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 5 Si 1.31 -4.87 8.28 68.60 0.57 -4.30 16 6 C -0.52 1.74 8.63 113.37 0.98 2.72 16 7 C -0.51 2.11 8.65 113.37 0.98 3.09 16 8 O -0.62 0.27 8.58 -148.98 -1.28 -1.00 16 9 C 0.09 -0.18 3.71 31.24 0.12 -0.07 16 10 C -0.01 0.01 7.78 86.36 0.67 0.68 16 11 N -0.41 -1.02 6.35 -723.03 -4.59 -5.61 16 12 C 0.17 0.86 6.41 179.32 1.15 2.01 16 13 N -0.52 -3.65 8.97 -202.03 -1.81 -5.46 16 14 C 0.04 0.15 10.07 83.54 0.84 0.99 16 15 C -0.27 -0.38 5.92 24.57 0.15 -0.23 16 16 C -0.05 0.09 3.08 71.24 0.22 0.31 16 17 O -0.55 0.34 12.88 -148.98 -1.92 -1.57 16 18 Si 1.00 -2.87 25.78 68.60 1.77 -1.11 16 19 H -0.26 0.35 7.11 99.48 0.71 1.06 16 20 H -0.26 0.05 7.11 99.48 0.71 0.76 16 21 H -0.25 0.68 7.11 99.48 0.71 1.38 16 22 S 0.21 0.47 23.21 -56.49 -1.31 -0.84 16 23 C 0.01 0.02 7.57 86.41 0.65 0.68 16 24 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 25 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 27 H 0.05 0.07 7.97 -2.39 -0.02 0.05 16 28 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 30 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 31 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.05 0.08 7.97 -2.39 -0.02 0.06 16 33 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 34 H 0.07 -0.35 7.25 -2.39 -0.02 -0.37 16 35 H 0.07 -0.16 7.79 -2.38 -0.02 -0.17 16 36 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 37 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 38 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 39 H 0.12 -0.82 6.44 -2.39 -0.02 -0.84 16 40 H 0.09 0.04 7.91 -2.39 -0.02 0.02 16 41 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.19 -0.04 5.87 -2.91 -0.02 -0.06 16 43 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 44 H 0.39 -2.63 8.70 -74.05 -0.64 -3.27 16 45 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.10 0.52 6.97 -2.39 -0.02 0.50 16 Total: 0.00 -11.71 379.28 -0.06 -11.77 By element: Atomic # 1 Polarization: -5.36 SS G_CDS: 1.07 Total: -4.29 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.44 Total: 12.42 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -6.40 Total: -11.07 kcal Atomic # 8 Polarization: 0.62 SS G_CDS: -3.20 Total: -2.58 kcal Atomic # 14 Polarization: -7.75 SS G_CDS: 2.34 Total: -5.41 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.31 Total: -0.84 kcal Total: -11.71 -0.06 -11.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.302 kcal (2) G-P(sol) polarization free energy of solvation -11.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds