Wall clock time and date at job start Mon Mar 8 2021 08:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33322 * 125.95416 * 2 1 4 4 C 1.50703 * 122.70961 * 0.02711 * 3 2 1 5 5 O 1.42896 * 109.47055 * 329.73414 * 4 3 2 6 6 Si 1.86304 * 109.46911 * 209.73307 * 4 3 2 7 7 H 1.48503 * 109.46928 * 179.97438 * 6 4 3 8 8 H 1.48494 * 109.47278 * 299.99835 * 6 4 3 9 9 H 1.48496 * 109.47072 * 60.00160 * 6 4 3 10 10 N 1.32124 * 114.57741 * 179.75763 * 3 2 1 11 11 C 1.29677 * 116.86758 * 0.24992 * 10 3 2 12 12 N 1.38612 * 124.94933 * 180.02562 * 11 10 3 13 13 C 1.47475 * 111.00028 * 275.96834 * 12 11 10 14 14 C 1.53511 * 87.93476 * 221.29765 * 13 12 11 15 15 O 1.42906 * 114.16875 * 272.38117 * 14 13 12 16 16 Si 1.63100 * 113.99739 * 243.83830 * 15 14 13 17 17 C 1.86305 * 109.47092 * 300.00015 * 16 15 14 18 18 C 1.86306 * 109.47154 * 59.99807 * 16 15 14 19 19 C 1.86297 * 109.47317 * 179.97438 * 16 15 14 20 20 C 1.53002 * 109.46766 * 59.99738 * 19 16 15 21 21 C 1.52997 * 109.47348 * 179.97438 * 19 16 15 22 22 C 1.53002 * 109.47161 * 300.00152 * 19 16 15 23 23 C 1.47482 * 110.99879 * 179.97438 * 12 11 10 24 24 S 1.70974 * 110.10326 * 359.97438 * 11 10 3 25 25 H 1.08999 * 109.47347 * 89.99260 * 1 2 3 26 26 H 1.08995 * 109.46914 * 209.99925 * 1 2 3 27 27 H 1.09011 * 109.46560 * 329.99763 * 1 2 3 28 28 H 1.09002 * 109.47152 * 89.73222 * 4 3 2 29 29 H 0.96708 * 114.00101 * 299.99358 * 5 4 3 30 30 H 1.09001 * 113.47516 * 336.06085 * 13 12 11 31 31 H 1.08997 * 113.47780 * 106.53028 * 13 12 11 32 32 H 1.08999 * 114.34825 * 139.68558 * 14 13 12 33 33 H 1.09001 * 109.47099 * 59.99656 * 17 16 15 34 34 H 1.08999 * 109.47036 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46778 * 300.00144 * 17 16 15 36 36 H 1.08996 * 109.47127 * 60.00245 * 18 16 15 37 37 H 1.08999 * 109.46893 * 179.97438 * 18 16 15 38 38 H 1.09003 * 109.46600 * 299.99977 * 18 16 15 39 39 H 1.09004 * 109.47431 * 60.00656 * 20 19 16 40 40 H 1.09001 * 109.46753 * 179.97438 * 20 19 16 41 41 H 1.08992 * 109.47365 * 300.00088 * 20 19 16 42 42 H 1.09000 * 109.47319 * 59.99988 * 21 19 16 43 43 H 1.09001 * 109.47460 * 180.02562 * 21 19 16 44 44 H 1.09005 * 109.46871 * 299.99963 * 21 19 16 45 45 H 1.08999 * 109.47074 * 59.99381 * 22 19 16 46 46 H 1.08992 * 109.47185 * 179.97438 * 22 19 16 47 47 H 1.09001 * 109.46706 * 300.00112 * 22 19 16 48 48 H 1.08997 * 113.47671 * 253.46558 * 23 12 11 49 49 H 1.09001 * 113.47841 * 23.87808 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4830 0.0006 5 8 0.4841 2.5034 -0.6779 6 14 2.9360 3.6165 -0.8707 7 1 2.3954 4.9997 -0.8707 8 1 4.2427 3.5953 -0.1656 9 1 3.1216 3.1582 -2.2709 10 7 3.5851 0.8186 0.0051 11 6 3.9315 -0.4311 0.0043 12 7 5.2384 -0.8928 0.0096 13 6 5.7909 -0.9313 -1.3572 14 6 6.4335 -2.2788 -0.9999 15 8 7.7258 -2.1698 -0.3994 16 14 8.9271 -2.8246 -1.2873 17 6 8.5914 -4.6391 -1.5442 18 6 9.0148 -1.9693 -2.9401 19 6 10.5472 -2.6128 -0.3924 20 6 10.4754 -3.3148 0.9652 21 6 11.6740 -3.2275 -1.2250 22 6 10.8225 -1.1225 -0.1819 23 6 5.2781 -2.3671 0.0076 24 16 2.5412 -1.4262 -0.0027 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6053 2.8194 1.0284 29 1 0.5300 2.2155 -1.6000 30 1 5.0279 -1.0060 -2.1320 31 1 6.5170 -0.1426 -1.5544 32 1 6.3900 -3.0225 -1.7955 33 1 7.6435 -4.7626 -2.0680 34 1 9.3945 -5.0767 -2.1372 35 1 8.5400 -5.1395 -0.5772 36 1 9.2112 -0.9077 -2.7899 37 1 9.8180 -2.4065 -3.5333 38 1 8.0670 -2.0929 -3.4639 39 1 10.2793 -4.3765 0.8153 40 1 11.4235 -3.1912 1.4886 41 1 9.6727 -2.8772 1.5585 42 1 11.7253 -2.7278 -2.1923 43 1 12.6219 -3.1040 -0.7011 44 1 11.4776 -4.2892 -1.3744 45 1 10.0197 -0.6849 0.4114 46 1 11.7702 -0.9986 0.3421 47 1 10.8736 -0.6224 -1.1491 48 1 5.5698 -2.7949 0.9667 49 1 4.3778 -2.8252 -0.4019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18362372_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:33 Heat of formation + Delta-G solvation = -39.403688 kcal Electronic energy + Delta-G solvation = -26669.390327 eV Core-core repulsion = 23076.159741 eV Total energy + Delta-G solvation = -3593.230587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.17330 -40.76759 -37.79782 -36.89968 -36.78456 -33.30510 -30.57269 -29.51342 -29.17293 -28.47782 -27.90974 -27.53702 -27.31672 -25.72419 -24.00591 -21.63457 -20.57959 -20.36595 -19.37309 -18.38352 -18.10523 -17.45739 -16.84099 -16.25278 -15.98270 -15.88296 -15.79127 -15.22491 -14.92801 -14.82739 -14.77194 -14.68475 -14.53753 -14.11617 -13.95771 -13.77475 -13.60014 -13.50485 -13.44924 -13.35517 -13.08697 -12.98204 -12.94808 -12.88952 -12.72836 -12.43502 -12.31363 -12.01259 -11.84000 -11.80756 -11.76283 -11.58075 -11.50993 -11.20334 -10.51954 -10.45209 -10.38019 -10.14760 -10.10630 -9.29010 -0.37080 0.11403 0.57071 1.18656 1.23774 1.61004 1.63480 1.69896 1.73754 1.93347 2.17125 2.20178 2.33610 3.04484 3.22282 3.39729 3.54238 3.78990 3.88254 3.95572 4.05943 4.08132 4.09306 4.18193 4.32972 4.42027 4.46353 4.53863 4.57889 4.63423 4.64624 4.65094 4.65568 4.69811 4.77359 4.82897 4.89248 4.96630 4.97103 5.07643 5.08087 5.13529 5.19139 5.28488 5.31355 5.37552 5.45876 5.47110 5.53531 5.60483 6.37934 6.75158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.196 4.196 3 C 0.032 3.968 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.976 3.024 7 H -0.259 1.259 8 H -0.242 1.242 9 H -0.260 1.260 10 N -0.467 5.467 11 C 0.193 3.807 12 N -0.370 5.370 13 C -0.007 4.007 14 C 0.098 3.902 15 O -0.589 6.589 16 Si 1.284 2.716 17 C -0.511 4.511 18 C -0.510 4.510 19 C -0.373 4.373 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.010 4.010 24 S 0.089 5.911 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.376 0.624 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.118 0.882 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 -3.771 -3.130 4.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.317 4.317 3 C -0.099 4.099 4 C -0.159 4.159 5 O -0.338 6.338 6 Si 0.797 3.203 7 H -0.183 1.183 8 H -0.165 1.165 9 H -0.183 1.183 10 N -0.185 5.185 11 C -0.176 4.176 12 N -0.091 5.091 13 C -0.136 4.136 14 C 0.040 3.960 15 O -0.547 6.547 16 Si 1.416 2.584 17 C -0.613 4.613 18 C -0.612 4.612 19 C -0.417 4.417 20 C -0.192 4.192 21 C -0.194 4.194 22 C -0.192 4.192 23 C -0.139 4.139 24 S 0.342 5.658 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.224 0.776 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.136 0.864 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.002 -3.137 -2.172 3.816 hybrid contribution -0.449 -0.377 -0.966 1.130 sum -0.446 -3.514 -3.138 4.732 Atomic orbital electron populations 1.20368 0.85907 1.03851 1.03201 1.25572 1.01885 0.93363 1.10918 1.20501 0.86990 0.97797 1.04652 1.24487 0.92769 0.94877 1.03785 1.86527 1.28870 1.89699 1.28704 0.85225 0.78350 0.77170 0.79558 1.18273 1.16459 1.18328 1.66008 1.16813 1.17787 1.17857 1.26018 0.95297 0.92095 1.04235 1.65771 1.08423 1.11364 1.23504 1.24583 0.99594 1.00149 0.89296 1.22385 0.83179 0.96299 0.94162 1.85414 1.23451 1.83524 1.62332 0.76851 0.59165 0.62488 0.59850 1.27044 1.05019 1.23946 1.05261 1.27057 1.04585 1.09178 1.20422 1.25766 1.14058 0.98650 1.03206 1.21521 1.02228 0.99731 0.95712 1.21561 0.98169 1.00266 0.99423 1.21520 1.02054 0.93999 1.01643 1.24542 0.98047 0.87540 1.03759 1.84098 0.99457 1.12032 1.70254 0.90491 0.91681 0.88419 0.85587 0.77637 0.89139 0.87087 0.88854 0.91471 0.90542 0.90689 0.90719 0.90621 0.91463 0.92712 0.92753 0.92056 0.92506 0.92441 0.92520 0.91983 0.92768 0.92708 0.86405 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.07 8.95 36.01 0.32 0.39 16 2 C -0.20 -0.22 6.50 -36.02 -0.23 -0.46 16 3 C 0.03 0.07 5.92 -84.18 -0.50 -0.42 16 4 C -0.05 -0.04 2.82 36.01 0.10 0.07 16 5 O -0.53 0.21 9.91 -35.23 -0.35 -0.14 16 6 Si 0.98 1.55 27.37 -169.99 -4.65 -3.10 16 7 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 8 H -0.24 -0.90 7.11 56.52 0.40 -0.50 16 9 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 10 N -0.47 -1.91 8.95 -11.36 -0.10 -2.01 16 11 C 0.19 0.51 6.59 -87.69 -0.58 -0.06 16 12 N -0.37 -0.71 6.52 -184.76 -1.20 -1.92 16 13 C -0.01 0.00 7.51 -7.50 -0.06 -0.05 16 14 C 0.10 -0.17 3.90 -26.18 -0.10 -0.27 16 15 O -0.59 0.26 8.61 -35.23 -0.30 -0.04 16 16 Si 1.28 -2.55 8.24 -169.99 -1.40 -3.95 16 17 C -0.51 1.02 8.64 101.05 0.87 1.89 16 18 C -0.51 0.87 8.65 101.05 0.87 1.74 16 19 C -0.37 0.27 0.53 -90.62 -0.05 0.22 16 20 C -0.13 0.04 7.84 37.16 0.29 0.33 16 21 C -0.14 0.14 7.85 37.16 0.29 0.44 16 22 C -0.14 0.00 7.85 37.16 0.29 0.29 16 23 C -0.01 0.01 7.16 -7.47 -0.05 -0.04 16 24 S 0.09 0.05 20.68 -107.50 -2.22 -2.17 16 25 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.10 -0.04 6.63 -51.92 -0.34 -0.39 16 28 H 0.13 0.01 7.96 -51.93 -0.41 -0.41 16 29 H 0.38 -1.23 8.68 45.56 0.40 -0.83 16 30 H 0.09 -0.17 7.89 -51.93 -0.41 -0.58 16 31 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.09 -0.42 6.48 -51.93 -0.34 -0.76 16 33 H 0.07 -0.18 7.30 -51.93 -0.38 -0.56 16 34 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 35 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 36 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 37 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 38 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 39 H 0.05 -0.06 7.80 -51.93 -0.40 -0.46 16 40 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 42 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 43 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 45 H 0.06 0.04 7.96 -51.93 -0.41 -0.38 16 46 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 48 H 0.12 -0.14 8.14 -51.93 -0.42 -0.56 16 49 H 0.09 -0.24 6.10 -49.47 -0.30 -0.55 16 LS Contribution 396.56 15.07 5.98 5.98 Total: 0.00 -6.11 396.56 -10.80 -16.91 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: -8.02 Total: -13.61 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 1.48 Total: 4.06 kcal Atomic # 7 Polarization: -2.62 SS G_CDS: -1.31 Total: -3.93 kcal Atomic # 8 Polarization: 0.47 SS G_CDS: -0.65 Total: -0.18 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -6.05 Total: -7.05 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.22 Total: -2.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -6.11 -10.80 -16.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.492 kcal (2) G-P(sol) polarization free energy of solvation -6.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds