Wall clock time and date at job start Mon Mar 8 2021 08:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33322 * 125.95416 * 2 1 4 4 C 1.50703 * 122.70961 * 0.02711 * 3 2 1 5 5 O 1.42896 * 109.47055 * 329.73414 * 4 3 2 6 6 Si 1.86304 * 109.46911 * 209.73307 * 4 3 2 7 7 H 1.48503 * 109.46928 * 179.97438 * 6 4 3 8 8 H 1.48494 * 109.47278 * 299.99835 * 6 4 3 9 9 H 1.48496 * 109.47072 * 60.00160 * 6 4 3 10 10 N 1.32124 * 114.57741 * 179.75763 * 3 2 1 11 11 C 1.29677 * 116.86758 * 0.24992 * 10 3 2 12 12 N 1.38612 * 124.94933 * 180.02562 * 11 10 3 13 13 C 1.47475 * 111.00028 * 275.96834 * 12 11 10 14 14 C 1.53511 * 87.93476 * 221.29765 * 13 12 11 15 15 O 1.42906 * 114.16875 * 272.38117 * 14 13 12 16 16 Si 1.63100 * 113.99739 * 243.83830 * 15 14 13 17 17 C 1.86305 * 109.47092 * 300.00015 * 16 15 14 18 18 C 1.86306 * 109.47154 * 59.99807 * 16 15 14 19 19 C 1.86297 * 109.47317 * 179.97438 * 16 15 14 20 20 C 1.53002 * 109.46766 * 59.99738 * 19 16 15 21 21 C 1.52997 * 109.47348 * 179.97438 * 19 16 15 22 22 C 1.53002 * 109.47161 * 300.00152 * 19 16 15 23 23 C 1.47482 * 110.99879 * 179.97438 * 12 11 10 24 24 S 1.70974 * 110.10326 * 359.97438 * 11 10 3 25 25 H 1.08999 * 109.47347 * 89.99260 * 1 2 3 26 26 H 1.08995 * 109.46914 * 209.99925 * 1 2 3 27 27 H 1.09011 * 109.46560 * 329.99763 * 1 2 3 28 28 H 1.09002 * 109.47152 * 89.73222 * 4 3 2 29 29 H 0.96708 * 114.00101 * 299.99358 * 5 4 3 30 30 H 1.09001 * 113.47516 * 336.06085 * 13 12 11 31 31 H 1.08997 * 113.47780 * 106.53028 * 13 12 11 32 32 H 1.08999 * 114.34825 * 139.68558 * 14 13 12 33 33 H 1.09001 * 109.47099 * 59.99656 * 17 16 15 34 34 H 1.08999 * 109.47036 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.46778 * 300.00144 * 17 16 15 36 36 H 1.08996 * 109.47127 * 60.00245 * 18 16 15 37 37 H 1.08999 * 109.46893 * 179.97438 * 18 16 15 38 38 H 1.09003 * 109.46600 * 299.99977 * 18 16 15 39 39 H 1.09004 * 109.47431 * 60.00656 * 20 19 16 40 40 H 1.09001 * 109.46753 * 179.97438 * 20 19 16 41 41 H 1.08992 * 109.47365 * 300.00088 * 20 19 16 42 42 H 1.09000 * 109.47319 * 59.99988 * 21 19 16 43 43 H 1.09001 * 109.47460 * 180.02562 * 21 19 16 44 44 H 1.09005 * 109.46871 * 299.99963 * 21 19 16 45 45 H 1.08999 * 109.47074 * 59.99381 * 22 19 16 46 46 H 1.08992 * 109.47185 * 179.97438 * 22 19 16 47 47 H 1.09001 * 109.46706 * 300.00112 * 22 19 16 48 48 H 1.08997 * 113.47671 * 253.46558 * 23 12 11 49 49 H 1.09001 * 113.47841 * 23.87808 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0792 0.0000 4 6 1.7416 2.4830 0.0006 5 8 0.4841 2.5034 -0.6779 6 14 2.9360 3.6165 -0.8707 7 1 2.3954 4.9997 -0.8707 8 1 4.2427 3.5953 -0.1656 9 1 3.1216 3.1582 -2.2709 10 7 3.5851 0.8186 0.0051 11 6 3.9315 -0.4311 0.0043 12 7 5.2384 -0.8928 0.0096 13 6 5.7909 -0.9313 -1.3572 14 6 6.4335 -2.2788 -0.9999 15 8 7.7258 -2.1698 -0.3994 16 14 8.9271 -2.8246 -1.2873 17 6 8.5914 -4.6391 -1.5442 18 6 9.0148 -1.9693 -2.9401 19 6 10.5472 -2.6128 -0.3924 20 6 10.4754 -3.3148 0.9652 21 6 11.6740 -3.2275 -1.2250 22 6 10.8225 -1.1225 -0.1819 23 6 5.2781 -2.3671 0.0076 24 16 2.5412 -1.4262 -0.0027 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6053 2.8194 1.0284 29 1 0.5300 2.2155 -1.6000 30 1 5.0279 -1.0060 -2.1320 31 1 6.5170 -0.1426 -1.5544 32 1 6.3900 -3.0225 -1.7955 33 1 7.6435 -4.7626 -2.0680 34 1 9.3945 -5.0767 -2.1372 35 1 8.5400 -5.1395 -0.5772 36 1 9.2112 -0.9077 -2.7899 37 1 9.8180 -2.4065 -3.5333 38 1 8.0670 -2.0929 -3.4639 39 1 10.2793 -4.3765 0.8153 40 1 11.4235 -3.1912 1.4886 41 1 9.6727 -2.8772 1.5585 42 1 11.7253 -2.7278 -2.1923 43 1 12.6219 -3.1040 -0.7011 44 1 11.4776 -4.2892 -1.3744 45 1 10.0197 -0.6849 0.4114 46 1 11.7702 -0.9986 0.3421 47 1 10.8736 -0.6224 -1.1491 48 1 5.5698 -2.7949 0.9667 49 1 4.3778 -2.8252 -0.4019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18362372_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:19:33 Heat of formation + Delta-G solvation = -34.538223 kcal Electronic energy + Delta-G solvation = -26669.179345 eV Core-core repulsion = 23076.159741 eV Total energy + Delta-G solvation = -3593.019604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14058 -40.79409 -37.77945 -36.84877 -36.71486 -33.29263 -30.53838 -29.36146 -29.05710 -28.47045 -27.83632 -27.47141 -27.22689 -25.71912 -24.03303 -21.53511 -20.59584 -20.31178 -19.38981 -18.33159 -18.08634 -17.42426 -16.85971 -16.23899 -15.98883 -15.89753 -15.71980 -15.17252 -14.89669 -14.86693 -14.77739 -14.62019 -14.46618 -14.02109 -13.87326 -13.71534 -13.48126 -13.39715 -13.33596 -13.16500 -12.99104 -12.94407 -12.91525 -12.85913 -12.64369 -12.39804 -12.38920 -12.25081 -11.90819 -11.75261 -11.70838 -11.51166 -11.44018 -11.14743 -10.52497 -10.44571 -10.31426 -10.16478 -10.05151 -9.31584 -0.42605 0.07826 0.51761 1.08563 1.41696 1.42551 1.55020 1.60336 1.76522 2.01375 2.12101 2.26524 2.45536 3.16690 3.27389 3.46453 3.63211 3.95035 3.98931 4.05037 4.12701 4.13900 4.18435 4.20180 4.40833 4.46177 4.52019 4.57021 4.75270 4.78551 4.78691 4.79591 4.81602 4.82224 4.84562 4.84989 4.92860 4.99787 5.00513 5.09575 5.09712 5.20833 5.29450 5.34523 5.40980 5.42860 5.47731 5.62314 5.65848 5.68357 6.51279 6.73566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.200 4.200 3 C 0.014 3.986 4 C -0.033 4.033 5 O -0.534 6.534 6 Si 1.003 2.997 7 H -0.264 1.264 8 H -0.279 1.279 9 H -0.268 1.268 10 N -0.504 5.504 11 C 0.178 3.822 12 N -0.402 5.402 13 C -0.011 4.011 14 C 0.101 3.899 15 O -0.610 6.610 16 Si 1.316 2.684 17 C -0.513 4.513 18 C -0.517 4.517 19 C -0.385 4.385 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.010 4.010 24 S 0.127 5.873 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.389 0.611 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.115 0.885 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -5.355 -4.143 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.322 4.322 3 C -0.117 4.117 4 C -0.147 4.147 5 O -0.340 6.340 6 Si 0.828 3.172 7 H -0.189 1.189 8 H -0.205 1.205 9 H -0.192 1.192 10 N -0.223 5.223 11 C -0.191 4.191 12 N -0.123 5.123 13 C -0.140 4.140 14 C 0.043 3.957 15 O -0.568 6.568 16 Si 1.447 2.553 17 C -0.616 4.616 18 C -0.619 4.619 19 C -0.427 4.427 20 C -0.194 4.194 21 C -0.198 4.198 22 C -0.194 4.194 23 C -0.139 4.139 24 S 0.380 5.620 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.239 0.761 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.134 0.866 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.325 -4.715 -3.197 5.848 hybrid contribution 0.018 0.132 -0.630 0.643 sum -1.307 -4.583 -3.827 6.112 Atomic orbital electron populations 1.20430 0.84425 1.03981 1.04257 1.25900 1.02915 0.93422 1.09916 1.20660 0.86760 0.98652 1.05608 1.24268 0.92635 0.93944 1.03885 1.86505 1.27963 1.89708 1.29803 0.84844 0.76673 0.77030 0.78612 1.18897 1.20476 1.19187 1.66008 1.17993 1.19087 1.19202 1.26244 0.96257 0.92351 1.04255 1.65778 1.08505 1.13160 1.24885 1.24681 0.99823 1.00664 0.88827 1.22559 0.82413 0.96192 0.94578 1.85404 1.24271 1.83926 1.63163 0.76291 0.57564 0.62551 0.58937 1.27034 1.05872 1.23244 1.05430 1.27126 1.05270 1.08666 1.20853 1.25985 1.15683 0.97728 1.03312 1.21542 1.01487 1.00425 0.95949 1.21602 0.97569 1.01027 0.99558 1.21538 1.01235 0.95016 1.01649 1.24645 0.99060 0.86050 1.04109 1.83832 0.97884 1.10871 1.69453 0.88876 0.91015 0.88768 0.85109 0.76129 0.87685 0.88283 0.85441 0.90220 0.90236 0.90892 0.91590 0.90305 0.90478 0.91677 0.93642 0.92740 0.91807 0.93386 0.91467 0.92962 0.93571 0.92159 0.86626 0.87311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.23 8.95 71.24 0.64 0.86 16 2 C -0.20 -0.34 6.50 24.58 0.16 -0.18 16 3 C 0.01 0.07 5.92 41.40 0.24 0.32 16 4 C -0.03 -0.06 2.82 71.24 0.20 0.14 16 5 O -0.53 0.75 9.91 -148.98 -1.48 -0.72 16 6 Si 1.00 4.62 27.37 68.60 1.88 6.50 16 7 H -0.26 -1.35 7.11 99.48 0.71 -0.64 16 8 H -0.28 -2.98 7.11 99.48 0.71 -2.28 16 9 H -0.27 -1.47 7.11 99.48 0.71 -0.77 16 10 N -0.50 -4.71 8.95 -189.86 -1.70 -6.41 16 11 C 0.18 1.05 6.59 179.32 1.18 2.23 16 12 N -0.40 -1.84 6.52 -738.84 -4.81 -6.65 16 13 C -0.01 0.01 7.51 83.61 0.63 0.63 16 14 C 0.10 -0.41 3.90 30.95 0.12 -0.28 16 15 O -0.61 0.47 8.61 -148.98 -1.28 -0.81 16 16 Si 1.32 -5.72 8.24 68.60 0.57 -5.15 16 17 C -0.51 2.85 8.64 113.37 0.98 3.83 16 18 C -0.52 2.02 8.65 113.37 0.98 3.00 16 19 C -0.39 0.32 0.53 -10.79 -0.01 0.31 16 20 C -0.14 -0.05 7.84 71.98 0.56 0.52 16 21 C -0.14 0.26 7.85 71.98 0.56 0.83 16 22 C -0.14 -0.22 7.85 71.98 0.56 0.35 16 23 C -0.01 0.02 7.16 83.62 0.60 0.62 16 24 S 0.13 0.05 20.68 -56.49 -1.17 -1.12 16 25 H 0.09 -0.59 8.14 -2.39 -0.02 -0.60 16 26 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 27 H 0.09 -0.19 6.63 -2.38 -0.02 -0.20 16 28 H 0.13 0.07 7.96 -2.39 -0.02 0.06 16 29 H 0.39 -2.88 8.68 -74.05 -0.64 -3.52 16 30 H 0.11 -0.43 7.89 -2.39 -0.02 -0.45 16 31 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.13 -1.43 6.48 -2.39 -0.02 -1.44 16 33 H 0.08 -0.63 7.30 -2.39 -0.02 -0.64 16 34 H 0.08 -0.46 7.79 -2.39 -0.02 -0.48 16 35 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 36 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 37 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 38 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 39 H 0.06 -0.13 7.80 -2.38 -0.02 -0.15 16 40 H 0.04 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.05 0.08 7.96 -2.39 -0.02 0.07 16 42 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 43 H 0.05 -0.01 8.14 -2.39 -0.02 -0.02 16 44 H 0.07 -0.27 7.79 -2.38 -0.02 -0.29 16 45 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 46 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 48 H 0.12 -0.27 8.14 -2.39 -0.02 -0.28 16 49 H 0.11 -0.71 6.10 -3.95 -0.02 -0.74 16 Total: 0.00 -15.53 396.56 0.45 -15.08 By element: Atomic # 1 Polarization: -14.90 SS G_CDS: 1.03 Total: -13.87 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 7.42 Total: 13.17 kcal Atomic # 7 Polarization: -6.55 SS G_CDS: -6.51 Total: -13.07 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: -2.76 Total: -1.54 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.44 Total: 1.35 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.17 Total: -1.12 kcal Total: -15.53 0.45 -15.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.460 kcal (2) G-P(sol) polarization free energy of solvation -15.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds