Wall clock time and date at job start Mon Mar 8 2021 08:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 C 1.52995 * 109.46965 * 240.00194 * 2 1 3 5 5 Si 1.86300 * 109.47037 * 119.99804 * 2 1 3 6 6 C 1.86300 * 109.47319 * 299.99857 * 5 2 1 7 7 C 1.86306 * 109.46693 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.47122 * 60.00381 * 5 2 1 9 9 C 1.42900 * 114.00075 * 180.02562 * 8 5 2 10 10 C 1.53935 * 113.73067 * 210.00026 * 9 8 5 11 11 N 1.47962 * 86.30001 * 269.30150 * 10 9 8 12 12 C 1.39145 * 111.00297 * 222.47188 * 11 10 9 13 13 C 1.39305 * 119.72055 * 179.97438 * 12 11 10 14 14 F 1.35100 * 120.46953 * 0.02562 * 13 12 11 15 15 C 1.38481 * 119.05822 * 179.97438 * 13 12 11 16 16 C 1.38857 * 118.48553 * 0.02562 * 15 13 12 17 17 C 1.50700 * 120.32791 * 180.02562 * 16 15 13 18 18 O 1.42905 * 109.47208 * 299.99943 * 17 16 15 19 19 Si 1.86300 * 109.47504 * 179.97438 * 17 16 15 20 20 H 1.48505 * 109.46646 * 59.99883 * 19 17 16 21 21 H 1.48497 * 109.47313 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 300.00331 * 19 17 16 23 23 C 1.38026 * 119.34697 * 359.97438 * 16 15 13 24 24 N 1.31981 * 120.90078 * 359.74945 * 23 16 15 25 25 C 1.48187 * 90.67343 * 335.41160 * 11 10 9 26 26 H 1.09000 * 109.46855 * 300.00337 * 1 2 3 27 27 H 1.08993 * 109.46897 * 59.99798 * 1 2 3 28 28 H 1.08992 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46758 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46827 * 299.99642 * 3 2 1 31 31 H 1.09000 * 109.47139 * 60.00000 * 3 2 1 32 32 H 1.09004 * 109.46954 * 299.99294 * 4 2 1 33 33 H 1.09000 * 109.47707 * 60.00258 * 4 2 1 34 34 H 1.09003 * 109.46931 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47064 * 179.97438 * 6 5 2 36 36 H 1.09001 * 109.47080 * 300.00136 * 6 5 2 37 37 H 1.09003 * 109.46915 * 59.99898 * 6 5 2 38 38 H 1.09000 * 109.47034 * 299.99758 * 7 5 2 39 39 H 1.08993 * 109.47069 * 60.00656 * 7 5 2 40 40 H 1.09007 * 109.46640 * 180.02562 * 7 5 2 41 41 H 1.09001 * 112.93481 * 341.55884 * 9 8 5 42 42 H 1.09002 * 113.76229 * 23.67547 * 10 9 8 43 43 H 1.09005 * 113.75703 * 154.93072 * 10 9 8 44 44 H 1.08001 * 120.75394 * 180.02562 * 15 13 12 45 45 H 1.09003 * 109.46947 * 59.99685 * 17 16 15 46 46 H 0.96689 * 114.00135 * 179.97438 * 18 17 16 47 47 H 1.08005 * 119.55238 * 179.97438 * 23 16 15 48 48 H 1.09005 * 113.65869 * 270.26633 * 25 11 10 49 49 H 1.09002 * 113.92722 * 138.95266 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8788 1.5207 8 8 1.6074 -2.4159 1.5212 9 6 2.0286 -3.1813 2.6520 10 6 2.1813 -4.6850 2.3603 11 7 0.7663 -4.8112 2.7741 12 6 0.5797 -5.9319 3.5774 13 6 -0.6898 -6.2243 4.0709 14 9 -1.7401 -5.4280 3.7744 15 6 -0.8600 -7.3434 4.8686 16 6 0.2477 -8.1332 5.1467 17 6 0.1096 -9.3608 6.0098 18 8 -0.3729 -8.9835 7.3010 19 14 1.7700 -10.1876 6.1839 20 1 2.7287 -9.2447 6.8140 21 1 1.6340 -11.3969 7.0349 22 1 2.2708 -10.5797 4.8420 23 6 1.4763 -7.7834 4.6239 24 7 1.6090 -6.7141 3.8618 25 6 0.8778 -3.5812 3.5929 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.8930 -0.5140 3.9322 36 1 1.8934 1.0278 3.0423 37 1 0.4401 0.0001 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1487 1.5205 40 1 4.3774 -1.3930 2.4105 41 1 2.8855 -2.7448 3.1651 42 1 2.3532 -4.9131 1.3083 43 1 2.8802 -5.1926 3.0251 44 1 -1.8322 -7.5960 5.2654 45 1 -0.5939 -10.0530 5.5471 46 1 -0.4864 -9.7254 7.9106 47 1 2.3402 -8.3952 4.8384 48 1 1.1941 -3.7663 4.6195 49 1 0.0091 -2.9261 3.5273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_18362372_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:21:02 Heat of formation + Delta-G solvation = -83.687704 kcal Electronic energy + Delta-G solvation = -28582.523790 eV Core-core repulsion = 24584.304301 eV Total energy + Delta-G solvation = -3998.219489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.83065 -42.23656 -40.45631 -37.99236 -36.83746 -36.64890 -33.68054 -32.50218 -29.57967 -29.10949 -29.08280 -27.85803 -27.50351 -27.27261 -25.98185 -24.71836 -22.86251 -21.21140 -20.26809 -19.31589 -18.92862 -18.48380 -18.06344 -17.75955 -16.99056 -16.64940 -16.02659 -15.94096 -15.86695 -15.61717 -15.06454 -14.94753 -14.83811 -14.81194 -14.69990 -14.45117 -14.23704 -14.12154 -13.99501 -13.57532 -13.53109 -13.42651 -13.27370 -12.93164 -12.92270 -12.81636 -12.74499 -12.54455 -12.38475 -12.20692 -12.15795 -11.77115 -11.67226 -11.51990 -11.30670 -11.12128 -10.88741 -10.60170 -10.48932 -10.36534 -10.06841 -9.36413 -0.31793 -0.05777 0.94839 1.28547 1.35704 1.36346 1.72566 1.75563 2.02314 2.19604 2.37360 2.51861 2.98802 3.10153 3.15800 3.40183 3.52937 3.60478 3.73546 3.93176 4.09710 4.13131 4.13488 4.15667 4.20018 4.37818 4.43929 4.49599 4.60920 4.64814 4.66033 4.71912 4.72008 4.74249 4.74660 4.82326 4.86178 4.87782 5.01996 5.03505 5.12467 5.12893 5.20723 5.31680 5.35309 5.43134 5.46468 5.52849 5.56397 5.59704 5.98198 6.39024 6.59571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.283 2.717 6 C -0.510 4.510 7 C -0.510 4.510 8 O -0.593 6.593 9 C 0.090 3.910 10 C 0.013 3.987 11 N -0.417 5.417 12 C 0.249 3.751 13 C 0.059 3.941 14 F -0.118 7.118 15 C -0.066 4.066 16 C -0.116 4.116 17 C -0.077 4.077 18 O -0.544 6.544 19 Si 0.940 3.060 20 H -0.243 1.243 21 H -0.250 1.250 22 H -0.244 1.244 23 C 0.108 3.892 24 N -0.481 5.481 25 C -0.004 4.004 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.155 0.845 45 H 0.084 0.916 46 H 0.385 0.615 47 H 0.160 0.840 48 H 0.087 0.913 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -2.150 2.785 3.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.414 2.586 6 C -0.612 4.612 7 C -0.612 4.612 8 O -0.551 6.551 9 C 0.032 3.968 10 C -0.115 4.115 11 N -0.136 5.136 12 C 0.017 3.983 13 C 0.036 3.964 14 F -0.096 7.096 15 C -0.093 4.093 16 C -0.119 4.119 17 C -0.188 4.188 18 O -0.351 6.351 19 Si 0.762 3.238 20 H -0.166 1.166 21 H -0.173 1.173 22 H -0.168 1.168 23 C -0.049 4.049 24 N -0.193 5.193 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.173 0.827 45 H 0.102 0.898 46 H 0.233 0.767 47 H 0.176 0.824 48 H 0.105 0.895 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.645 -1.928 1.580 3.634 hybrid contribution -0.879 -0.062 1.116 1.422 sum 1.766 -1.989 2.695 3.787 Atomic orbital electron populations 1.21513 0.93732 1.02165 1.01741 1.25766 1.00749 1.02547 1.12631 1.21560 1.00736 0.94943 1.02148 1.21514 1.00547 1.00340 0.96735 0.76869 0.63077 0.53434 0.65188 1.27058 1.07112 1.09481 1.17543 1.27044 1.24891 1.04751 1.04543 1.85421 1.78519 1.45685 1.45450 1.22841 0.95020 0.92965 0.85983 1.24352 0.88946 0.93473 1.04684 1.66333 1.24614 0.98961 1.23742 1.20710 0.88594 0.95656 0.93378 1.18156 0.84277 0.92575 1.01408 1.91556 1.54534 1.71967 1.91561 1.21453 1.01002 0.91936 0.94861 1.20103 0.93671 0.98064 1.00079 1.24623 1.10729 0.97761 0.85662 1.86491 1.88825 1.37664 1.22090 0.85812 0.76119 0.79736 0.82181 1.16577 1.17319 1.16794 1.22433 0.96138 0.93181 0.93175 1.67662 1.30990 1.06021 1.14630 1.24669 1.01255 0.90831 0.96292 0.92742 0.92820 0.91995 0.92543 0.92488 0.92537 0.92060 0.92805 0.92733 0.91499 0.90719 0.90781 0.90740 0.90678 0.91480 0.89949 0.87542 0.86981 0.82723 0.89842 0.76742 0.82354 0.89485 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.08 7.85 37.16 0.29 0.22 16 2 C -0.37 0.01 0.53 -90.62 -0.05 -0.04 16 3 C -0.14 0.06 7.85 37.16 0.29 0.35 16 4 C -0.13 -0.05 7.85 37.15 0.29 0.24 16 5 Si 1.28 -1.23 8.25 -169.99 -1.40 -2.63 16 6 C -0.51 0.39 8.65 101.05 0.87 1.26 16 7 C -0.51 0.43 8.63 101.05 0.87 1.30 16 8 O -0.59 -0.46 8.58 -35.23 -0.30 -0.76 16 9 C 0.09 -0.01 3.74 -25.79 -0.10 -0.10 16 10 C 0.01 0.01 7.48 -2.77 -0.02 -0.01 16 11 N -0.42 -1.15 6.10 -175.87 -1.07 -2.23 16 12 C 0.25 0.77 5.90 -154.84 -0.91 -0.15 16 13 C 0.06 0.18 7.27 -39.10 -0.28 -0.11 16 14 F -0.12 -0.47 17.10 2.25 0.04 -0.43 16 15 C -0.07 -0.08 9.75 -39.26 -0.38 -0.47 16 16 C -0.12 -0.06 5.43 -104.47 -0.57 -0.63 16 17 C -0.08 0.15 2.83 36.01 0.10 0.25 16 18 O -0.54 0.78 12.76 -35.23 -0.45 0.33 16 19 Si 0.94 -2.09 25.10 -169.99 -4.27 -6.36 16 20 H -0.24 0.23 7.11 56.52 0.40 0.63 16 21 H -0.25 0.51 7.11 56.52 0.40 0.91 16 22 H -0.24 0.40 7.11 56.52 0.40 0.81 16 23 C 0.11 0.11 9.84 -17.57 -0.17 -0.06 16 24 N -0.48 -1.20 8.21 -12.36 -0.10 -1.30 16 25 C 0.00 0.00 7.72 -2.65 -0.02 -0.02 16 26 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 27 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.06 0.07 7.96 -51.93 -0.41 -0.34 16 29 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 30 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 32 H 0.06 0.05 7.97 -51.93 -0.41 -0.36 16 33 H 0.05 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.05 -0.02 7.79 -51.93 -0.40 -0.42 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 37 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 38 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 40 H 0.07 -0.09 7.28 -51.93 -0.38 -0.46 16 41 H 0.08 -0.20 6.44 -51.93 -0.33 -0.53 16 42 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.11 0.04 6.67 -51.93 -0.35 -0.31 16 44 H 0.16 -0.04 8.06 -52.49 -0.42 -0.47 16 45 H 0.08 -0.31 7.96 -51.93 -0.41 -0.73 16 46 H 0.38 -2.23 8.74 45.56 0.40 -1.83 16 47 H 0.16 -0.15 4.88 -52.48 -0.26 -0.41 16 48 H 0.09 -0.04 7.91 -51.93 -0.41 -0.45 16 49 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 393.61 15.07 5.93 5.93 Total: 0.00 -5.94 393.61 -8.96 -14.90 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -7.55 Total: -9.50 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 0.22 Total: 2.04 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -1.17 Total: -3.53 kcal Atomic # 8 Polarization: 0.32 SS G_CDS: -0.75 Total: -0.43 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.04 Total: -0.43 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: -5.67 Total: -8.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -5.94 -8.96 -14.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.784 kcal (2) G-P(sol) polarization free energy of solvation -5.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds