Wall clock time and date at job start Mon Mar 8 2021 08:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46896 * 2 1 4 4 C 1.52995 * 109.46965 * 240.00194 * 2 1 3 5 5 Si 1.86300 * 109.47037 * 119.99804 * 2 1 3 6 6 C 1.86300 * 109.47319 * 299.99857 * 5 2 1 7 7 C 1.86306 * 109.46693 * 179.97438 * 5 2 1 8 8 O 1.63100 * 109.47122 * 60.00381 * 5 2 1 9 9 C 1.42900 * 114.00075 * 180.02562 * 8 5 2 10 10 C 1.53935 * 113.73067 * 210.00026 * 9 8 5 11 11 N 1.47962 * 86.30001 * 269.30150 * 10 9 8 12 12 C 1.39145 * 111.00297 * 222.47188 * 11 10 9 13 13 C 1.39305 * 119.72055 * 179.97438 * 12 11 10 14 14 F 1.35100 * 120.46953 * 0.02562 * 13 12 11 15 15 C 1.38481 * 119.05822 * 179.97438 * 13 12 11 16 16 C 1.38857 * 118.48553 * 0.02562 * 15 13 12 17 17 C 1.50700 * 120.32791 * 180.02562 * 16 15 13 18 18 O 1.42905 * 109.47208 * 299.99943 * 17 16 15 19 19 Si 1.86300 * 109.47504 * 179.97438 * 17 16 15 20 20 H 1.48505 * 109.46646 * 59.99883 * 19 17 16 21 21 H 1.48497 * 109.47313 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47136 * 300.00331 * 19 17 16 23 23 C 1.38026 * 119.34697 * 359.97438 * 16 15 13 24 24 N 1.31981 * 120.90078 * 359.74945 * 23 16 15 25 25 C 1.48187 * 90.67343 * 335.41160 * 11 10 9 26 26 H 1.09000 * 109.46855 * 300.00337 * 1 2 3 27 27 H 1.08993 * 109.46897 * 59.99798 * 1 2 3 28 28 H 1.08992 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46758 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46827 * 299.99642 * 3 2 1 31 31 H 1.09000 * 109.47139 * 60.00000 * 3 2 1 32 32 H 1.09004 * 109.46954 * 299.99294 * 4 2 1 33 33 H 1.09000 * 109.47707 * 60.00258 * 4 2 1 34 34 H 1.09003 * 109.46931 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.47064 * 179.97438 * 6 5 2 36 36 H 1.09001 * 109.47080 * 300.00136 * 6 5 2 37 37 H 1.09003 * 109.46915 * 59.99898 * 6 5 2 38 38 H 1.09000 * 109.47034 * 299.99758 * 7 5 2 39 39 H 1.08993 * 109.47069 * 60.00656 * 7 5 2 40 40 H 1.09007 * 109.46640 * 180.02562 * 7 5 2 41 41 H 1.09001 * 112.93481 * 341.55884 * 9 8 5 42 42 H 1.09002 * 113.76229 * 23.67547 * 10 9 8 43 43 H 1.09005 * 113.75703 * 154.93072 * 10 9 8 44 44 H 1.08001 * 120.75394 * 180.02562 * 15 13 12 45 45 H 1.09003 * 109.46947 * 59.99685 * 17 16 15 46 46 H 0.96689 * 114.00135 * 179.97438 * 18 17 16 47 47 H 1.08005 * 119.55238 * 179.97438 * 23 16 15 48 48 H 1.09005 * 113.65869 * 270.26633 * 25 11 10 49 49 H 1.09002 * 113.92722 * 138.95266 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8788 1.5207 8 8 1.6074 -2.4159 1.5212 9 6 2.0286 -3.1813 2.6520 10 6 2.1813 -4.6850 2.3603 11 7 0.7663 -4.8112 2.7741 12 6 0.5797 -5.9319 3.5774 13 6 -0.6898 -6.2243 4.0709 14 9 -1.7401 -5.4280 3.7744 15 6 -0.8600 -7.3434 4.8686 16 6 0.2477 -8.1332 5.1467 17 6 0.1096 -9.3608 6.0098 18 8 -0.3729 -8.9835 7.3010 19 14 1.7700 -10.1876 6.1839 20 1 2.7287 -9.2447 6.8140 21 1 1.6340 -11.3969 7.0349 22 1 2.2708 -10.5797 4.8420 23 6 1.4763 -7.7834 4.6239 24 7 1.6090 -6.7141 3.8618 25 6 0.8778 -3.5812 3.5929 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 1.8930 -0.5140 3.9322 36 1 1.8934 1.0278 3.0423 37 1 0.4401 0.0001 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1487 1.5205 40 1 4.3774 -1.3930 2.4105 41 1 2.8855 -2.7448 3.1651 42 1 2.3532 -4.9131 1.3083 43 1 2.8802 -5.1926 3.0251 44 1 -1.8322 -7.5960 5.2654 45 1 -0.5939 -10.0530 5.5471 46 1 -0.4864 -9.7254 7.9106 47 1 2.3402 -8.3952 4.8384 48 1 1.1941 -3.7663 4.6195 49 1 0.0091 -2.9261 3.5273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_18362372_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:21:02 Heat of formation + Delta-G solvation = -78.631779 kcal Electronic energy + Delta-G solvation = -28582.304549 eV Core-core repulsion = 24584.304301 eV Total energy + Delta-G solvation = -3998.000247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.04128 -42.30411 -40.48671 -37.86535 -36.83842 -36.65190 -33.72185 -32.57207 -29.53295 -29.06976 -29.06231 -27.83580 -27.53581 -27.27817 -25.94968 -24.79989 -22.89791 -21.23110 -20.27457 -19.35969 -18.92162 -18.45045 -18.12328 -17.77261 -17.13140 -16.67314 -16.03026 -15.90738 -15.86734 -15.61672 -15.09091 -14.97353 -14.84525 -14.75173 -14.67944 -14.49244 -14.28411 -14.13747 -13.98217 -13.59466 -13.48406 -13.35002 -13.17613 -12.95264 -12.91700 -12.84339 -12.66476 -12.50588 -12.38884 -12.06780 -12.02919 -11.76050 -11.68172 -11.51799 -11.30139 -11.13857 -10.97905 -10.67703 -10.34067 -10.32134 -10.05135 -9.44682 -0.40379 -0.14921 1.12784 1.43377 1.47428 1.54390 1.77699 1.92432 2.11683 2.15175 2.36797 2.49764 2.94649 3.03524 3.25284 3.38524 3.54984 3.59875 3.75582 3.99728 4.10281 4.13308 4.15967 4.20582 4.26207 4.39252 4.40160 4.48160 4.58362 4.63778 4.71261 4.76664 4.79218 4.80597 4.82063 4.82642 4.83389 4.84207 4.98478 5.00928 5.10009 5.10119 5.21089 5.25964 5.35400 5.41514 5.46216 5.55782 5.61257 5.66143 5.90274 6.49402 6.80371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.309 2.691 6 C -0.515 4.515 7 C -0.514 4.514 8 O -0.611 6.611 9 C 0.093 3.907 10 C 0.012 3.988 11 N -0.440 5.440 12 C 0.238 3.762 13 C 0.037 3.963 14 F -0.130 7.130 15 C -0.065 4.065 16 C -0.118 4.118 17 C -0.075 4.075 18 O -0.562 6.562 19 Si 0.972 3.028 20 H -0.263 1.263 21 H -0.248 1.248 22 H -0.253 1.253 23 C 0.102 3.898 24 N -0.492 5.492 25 C -0.005 4.005 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.168 0.832 45 H 0.107 0.893 46 H 0.403 0.597 47 H 0.175 0.825 48 H 0.097 0.903 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -2.655 3.847 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.425 4.425 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.440 2.560 6 C -0.617 4.617 7 C -0.616 4.616 8 O -0.569 6.569 9 C 0.035 3.965 10 C -0.116 4.116 11 N -0.160 5.160 12 C 0.006 3.994 13 C 0.014 3.986 14 F -0.109 7.109 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.186 4.186 18 O -0.371 6.371 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.172 1.172 22 H -0.177 1.177 23 C -0.055 4.055 24 N -0.204 5.204 25 C -0.132 4.132 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.186 0.814 45 H 0.124 0.876 46 H 0.254 0.746 47 H 0.192 0.808 48 H 0.115 0.885 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.277 -2.440 2.639 4.864 hybrid contribution -1.094 0.049 0.792 1.352 sum 2.183 -2.390 3.431 4.717 Atomic orbital electron populations 1.21532 0.94487 1.01555 1.01789 1.25923 1.00199 1.03131 1.13198 1.21601 1.01361 0.94553 1.02212 1.21536 1.01098 0.99886 0.96849 0.76395 0.62880 0.52460 0.64222 1.27100 1.06820 1.09908 1.17894 1.27060 1.24602 1.05171 1.04817 1.85408 1.79020 1.46534 1.45949 1.22920 0.95447 0.92481 0.85639 1.24379 0.88367 0.94493 1.04325 1.66341 1.25627 0.99545 1.24495 1.20817 0.88811 0.96001 0.93723 1.18389 0.84140 0.93390 1.02693 1.91515 1.55014 1.72463 1.91863 1.21658 1.01927 0.91337 0.94190 1.20401 0.93100 0.98624 0.99941 1.24675 1.11742 0.96662 0.85505 1.86443 1.88865 1.39319 1.22508 0.85360 0.75012 0.78893 0.81274 1.18737 1.17161 1.17658 1.22811 0.97084 0.92940 0.92705 1.67673 1.30974 1.06556 1.15223 1.24733 1.01534 0.90068 0.96837 0.92093 0.93393 0.92915 0.91630 0.93193 0.91768 0.92807 0.93414 0.91883 0.90810 0.90253 0.91313 0.91034 0.90204 0.90691 0.87244 0.88239 0.86452 0.81416 0.87575 0.74567 0.80790 0.88513 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.30 7.85 71.98 0.56 0.26 16 2 C -0.38 -0.18 0.53 -10.79 -0.01 -0.18 16 3 C -0.14 0.12 7.85 71.98 0.56 0.68 16 4 C -0.14 -0.23 7.85 71.98 0.56 0.34 16 5 Si 1.31 -2.65 8.25 68.60 0.57 -2.08 16 6 C -0.52 1.03 8.65 113.37 0.98 2.01 16 7 C -0.51 1.32 8.63 113.37 0.98 2.30 16 8 O -0.61 -1.25 8.58 -148.98 -1.28 -2.53 16 9 C 0.09 0.00 3.74 31.23 0.12 0.12 16 10 C 0.01 0.03 7.48 86.41 0.65 0.68 16 11 N -0.44 -2.98 6.10 -713.16 -4.35 -7.33 16 12 C 0.24 1.73 5.90 133.06 0.79 2.52 16 13 C 0.04 0.26 7.27 22.58 0.16 0.43 16 14 F -0.13 -1.25 17.10 44.97 0.77 -0.48 16 15 C -0.06 -0.18 9.75 22.48 0.22 0.04 16 16 C -0.12 -0.09 5.43 -19.77 -0.11 -0.20 16 17 C -0.08 0.37 2.83 71.24 0.20 0.57 16 18 O -0.56 2.26 12.76 -148.98 -1.90 0.36 16 19 Si 0.97 -5.14 25.10 68.60 1.72 -3.42 16 20 H -0.26 0.53 7.11 99.48 0.71 1.23 16 21 H -0.25 1.35 7.11 99.48 0.71 2.06 16 22 H -0.25 1.01 7.11 99.48 0.71 1.72 16 23 C 0.10 0.23 9.84 84.62 0.83 1.06 16 24 N -0.49 -2.79 8.21 -193.02 -1.58 -4.37 16 25 C -0.01 -0.01 7.72 86.36 0.67 0.66 16 26 H 0.06 0.04 7.79 -2.39 -0.02 0.02 16 27 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 0.21 7.96 -2.39 -0.02 0.19 16 29 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 30 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 32 H 0.05 0.16 7.97 -2.38 -0.02 0.14 16 33 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 37 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 38 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 39 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 40 H 0.07 -0.30 7.28 -2.38 -0.02 -0.32 16 41 H 0.11 -0.63 6.44 -2.39 -0.02 -0.65 16 42 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.12 0.14 6.67 -2.38 -0.02 0.13 16 44 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.11 -0.99 7.96 -2.39 -0.02 -1.01 16 46 H 0.40 -5.24 8.74 -74.06 -0.65 -5.89 16 47 H 0.18 -0.36 4.88 -2.91 -0.01 -0.37 16 48 H 0.10 -0.04 7.91 -2.38 -0.02 -0.06 16 49 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 Total: 0.00 -14.27 393.61 2.16 -12.11 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: 1.05 Total: -3.53 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 7.17 Total: 11.28 kcal Atomic # 7 Polarization: -5.77 SS G_CDS: -5.94 Total: -11.70 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: -3.18 Total: -2.17 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.77 Total: -0.48 kcal Atomic # 14 Polarization: -7.79 SS G_CDS: 2.29 Total: -5.50 kcal Total: -14.27 2.16 -12.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_18362372_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.522 kcal (2) G-P(sol) polarization free energy of solvation -14.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds