Wall clock time and date at job start Mon Mar 8 2021 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00900 * 109.46472 * 1 2 4 4 H 1.00901 * 109.46717 * 240.00687 * 1 2 3 5 5 C 1.46888 * 109.47409 * 120.00164 * 1 2 3 6 6 H 1.09000 * 112.91082 * 288.75231 * 5 1 2 7 7 C 1.53786 * 113.61561 * 60.00356 * 5 1 2 8 8 C 1.53781 * 87.17350 * 89.15683 * 7 5 1 9 9 H 1.08997 * 113.61223 * 270.84552 * 8 7 5 10 10 C 1.50698 * 113.61342 * 140.02323 * 8 7 5 11 11 C 1.37932 * 119.92458 * 120.00457 * 10 8 7 12 12 C 1.39616 * 119.85322 * 180.02562 * 11 10 8 13 13 C 1.47785 * 120.14888 * 179.97438 * 12 11 10 14 14 C 1.35952 * 125.93396 * 179.71179 * 13 12 11 15 15 C 1.40928 * 106.74367 * 179.85356 * 14 13 12 16 16 C 1.34735 * 107.02775 * 0.41351 * 15 14 13 17 17 C 1.50703 * 125.66478 * 179.72661 * 16 15 14 18 18 O 1.42902 * 109.47081 * 64.99305 * 17 16 15 19 19 Si 1.86292 * 109.47483 * 184.99512 * 17 16 15 20 20 O 1.34307 * 108.67454 * 359.74191 * 16 15 14 21 21 C 1.39578 * 119.70605 * 359.97438 * 12 11 10 22 22 C 1.37972 * 119.84832 * 0.02562 * 21 12 11 23 23 C 1.38341 * 120.15083 * 359.72767 * 22 21 12 24 24 C 1.53782 * 87.08260 * 25.39213 * 8 7 5 25 25 H 1.09002 * 113.61357 * 334.56600 * 7 5 1 26 26 H 1.09002 * 113.61608 * 203.74762 * 7 5 1 27 27 H 1.08002 * 120.07635 * 0.02562 * 11 10 8 28 28 H 1.08001 * 126.62696 * 0.02562 * 14 13 12 29 29 H 1.07993 * 126.48638 * 180.15384 * 15 14 13 30 30 H 1.09002 * 109.47094 * 305.00009 * 17 16 15 31 31 H 0.96700 * 113.99876 * 180.02562 * 18 17 16 32 32 H 1.48499 * 110.00217 * 300.00349 * 19 17 16 33 33 H 1.48506 * 109.99938 * 61.31603 * 19 17 16 34 34 H 1.07992 * 120.07603 * 179.97438 * 21 12 11 35 35 H 1.08001 * 119.92705 * 179.97438 * 22 21 12 36 36 H 1.07999 * 119.85826 * 180.27292 * 23 22 21 37 37 H 1.08997 * 113.61668 * 89.11298 * 24 8 7 38 38 H 1.08998 * 113.61674 * 219.93807 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4897 -0.6925 -1.1993 6 1 -0.3269 -0.1230 -2.1143 7 6 -0.0309 -2.1571 -1.2955 8 6 -1.2963 -2.5259 -0.5033 9 1 -1.1539 -2.5142 0.5773 10 6 -1.9691 -3.7830 -0.9913 11 6 -2.1233 -4.8563 -0.1389 12 6 -2.7463 -6.0204 -0.5927 13 6 -2.9144 -7.1745 0.3149 14 6 -3.5054 -8.3577 0.0000 15 6 -3.4432 -9.1627 1.1551 16 6 -2.8321 -8.4353 2.1105 17 6 -2.5523 -8.8927 3.5189 18 8 -1.6242 -9.9790 3.4914 19 14 -1.8288 -7.4824 4.4977 20 8 -2.5139 -7.2347 1.5994 21 6 -3.2097 -6.0893 -1.9075 22 6 -3.0491 -5.0084 -2.7498 23 6 -2.4355 -3.8561 -2.2922 24 6 -1.9234 -1.2351 -1.0560 25 1 0.8954 -2.3607 -0.7582 26 1 -0.0241 -2.5466 -2.3135 27 1 -1.7628 -4.7964 0.8775 28 1 -3.9365 -8.6293 -0.9523 29 1 -3.8185 -10.1702 1.2566 30 1 -3.4812 -9.2203 3.9858 31 1 -1.3980 -10.3252 4.3655 32 1 -0.5618 -7.0267 3.8714 33 1 -2.7972 -6.3584 4.5607 34 1 -3.6922 -6.9869 -2.2650 35 1 -3.4069 -5.0604 -3.7675 36 1 -2.3162 -3.0112 -2.9542 37 1 -2.4346 -1.3712 -2.0090 38 1 -2.5260 -0.6949 -0.3258 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:00 Heat of formation + Delta-G solvation = 125.170885 kcal Electronic energy + Delta-G solvation = -20383.178272 eV Core-core repulsion = 17277.380876 eV Total energy + Delta-G solvation = -3105.797396 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.91211 -41.99121 -39.92033 -37.94726 -36.07986 -34.42183 -33.33727 -32.10379 -30.56358 -27.04082 -26.62860 -26.39854 -23.72633 -23.67085 -22.24959 -21.57721 -20.43407 -19.35769 -18.75031 -18.56717 -18.37966 -17.36775 -17.20481 -16.98919 -16.50324 -16.40182 -15.90441 -15.57536 -14.96754 -14.76677 -14.52221 -14.40038 -14.28802 -14.09669 -13.96004 -13.58831 -13.19764 -12.95510 -12.77379 -12.62337 -12.24840 -11.96012 -11.78557 -11.52641 -11.28549 -10.74040 -10.46904 -9.90421 -9.07811 -5.10948 -0.48577 0.20142 0.70572 1.08691 1.35663 1.46836 1.54154 1.57801 1.87126 2.57949 2.81085 3.01195 3.12985 3.38401 3.57626 3.64773 3.70639 3.72289 3.76388 3.83165 3.98115 4.02709 4.10383 4.20318 4.23909 4.34482 4.36852 4.52873 4.54032 4.63232 4.63987 4.67567 4.77500 4.82481 4.88414 4.89798 4.96679 5.12259 5.18712 5.30096 5.35469 5.43584 5.79652 5.81579 6.74467 Molecular weight = 273.13amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.004979 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.692910 B = 5621.951317 C = 6813.593467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 H 0.452 0.548 3 H 0.455 0.545 4 H 0.439 0.561 5 C 0.033 3.967 6 H 0.175 0.825 7 C -0.141 4.141 8 C -0.100 4.100 9 H 0.124 0.876 10 C -0.071 4.071 11 C -0.116 4.116 12 C -0.041 4.041 13 C 0.015 3.985 14 C -0.202 4.202 15 C -0.182 4.182 16 C -0.032 4.032 17 C -0.053 4.053 18 O -0.564 6.564 19 Si 0.815 3.185 20 O -0.187 6.187 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.141 4.141 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.117 0.883 31 H 0.413 0.587 32 H -0.297 1.297 33 H -0.287 1.287 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.110 0.890 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 27.617 -1.077 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.011 5.011 2 H 0.284 0.716 3 H 0.287 0.713 4 H 0.269 0.731 5 C -0.073 4.073 6 H 0.192 0.808 7 C -0.178 4.178 8 C -0.118 4.118 9 H 0.142 0.858 10 C -0.071 4.071 11 C -0.134 4.134 12 C -0.041 4.041 13 C -0.034 4.034 14 C -0.221 4.221 15 C -0.201 4.201 16 C -0.081 4.081 17 C -0.161 4.161 18 O -0.376 6.376 19 Si 0.718 3.282 20 O -0.086 6.086 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.178 4.178 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.138 0.862 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.135 0.865 31 H 0.266 0.734 32 H -0.224 1.224 33 H -0.214 1.214 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.181 0.819 37 H 0.128 0.872 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.793 28.639 -1.777 30.319 hybrid contribution -0.718 -1.398 -0.378 1.616 sum 9.074 27.241 -2.154 28.794 Atomic orbital electron populations 1.41990 1.22125 1.20951 1.16068 0.71581 0.71298 0.73102 1.23733 0.96816 0.96049 0.90694 0.80791 1.23566 0.97946 0.92762 1.03556 1.22122 0.96881 0.90997 1.01816 0.85846 1.19807 0.98572 0.95511 0.93238 1.21286 0.99030 0.92733 1.00350 1.17974 1.02682 0.91216 0.92257 1.21015 1.02863 0.97374 0.82187 1.22169 1.05204 0.93425 1.01291 1.21852 1.03748 1.01886 0.92650 1.22065 1.03960 0.84397 0.97685 1.24189 0.99343 1.00706 0.91814 1.86415 1.63413 1.50410 1.37348 0.93948 0.76249 0.73531 0.84444 1.83898 1.64993 1.34780 1.24894 1.21303 0.99599 1.00553 0.91703 1.21433 0.98815 0.92977 1.00454 1.21528 0.96617 0.98363 0.95633 1.23656 0.95117 0.93916 1.05134 0.87627 0.87686 0.86153 0.81331 0.81848 0.86534 0.73379 1.22431 1.21365 0.85514 0.83604 0.81865 0.87153 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 46.12 4.51 -166.25 -0.75 45.37 16 2 H 0.45 -35.82 9.02 -89.69 -0.81 -36.63 16 3 H 0.45 -36.43 9.03 -89.69 -0.81 -37.24 16 4 H 0.44 -33.63 8.01 -89.69 -0.72 -34.35 16 5 C 0.03 -2.14 4.97 45.51 0.23 -1.91 16 6 H 0.17 -11.57 8.14 -2.39 -0.02 -11.59 16 7 C -0.14 7.46 7.34 31.12 0.23 7.69 16 8 C -0.10 4.68 3.63 -11.01 -0.04 4.64 16 9 H 0.12 -6.22 7.66 -2.39 -0.02 -6.24 16 10 C -0.07 2.26 5.28 -19.90 -0.11 2.16 16 11 C -0.12 2.52 9.38 22.53 0.21 2.73 16 12 C -0.04 0.61 5.87 -20.10 -0.12 0.49 16 13 C 0.01 -0.13 7.03 24.27 0.17 0.04 16 14 C -0.20 1.75 10.26 22.40 0.23 1.98 16 15 C -0.18 1.35 10.78 22.12 0.24 1.59 16 16 C -0.03 0.24 6.24 24.88 0.16 0.40 16 17 C -0.05 0.77 2.97 71.24 0.21 0.98 16 18 O -0.56 7.90 12.86 -148.98 -1.92 5.98 16 19 Si 0.81 -14.53 32.11 68.60 2.20 -12.32 16 20 O -0.19 1.25 8.81 -6.27 -0.06 1.20 16 21 C -0.11 2.00 9.56 22.53 0.22 2.22 16 22 C -0.12 2.83 10.03 22.23 0.22 3.05 16 23 C -0.10 3.19 8.62 22.33 0.19 3.38 16 24 C -0.14 7.60 7.12 31.18 0.22 7.82 16 25 H 0.11 -5.78 8.14 -2.39 -0.02 -5.80 16 26 H 0.10 -4.99 7.73 -2.39 -0.02 -5.01 16 27 H 0.12 -2.64 7.91 -2.91 -0.02 -2.66 16 28 H 0.17 -2.21 7.26 -2.91 -0.02 -2.23 16 29 H 0.16 -1.65 8.06 -2.91 -0.02 -1.68 16 30 H 0.12 -2.26 7.96 -2.39 -0.02 -2.28 16 31 H 0.41 -10.45 8.74 -74.06 -0.65 -11.10 16 32 H -0.30 3.20 7.11 99.48 0.71 3.90 16 33 H -0.29 3.70 7.11 99.48 0.71 4.41 16 34 H 0.13 -2.26 6.99 -2.91 -0.02 -2.28 16 35 H 0.15 -3.89 8.06 -2.91 -0.02 -3.91 16 36 H 0.16 -6.31 6.64 -2.91 -0.02 -6.33 16 37 H 0.11 -5.46 6.30 -2.39 -0.02 -5.48 16 38 H 0.11 -6.15 8.14 -2.39 -0.02 -6.17 16 Total: 1.00 -95.11 315.37 -0.09 -95.20 By element: Atomic # 1 Polarization: -170.84 SS G_CDS: -1.83 Total: -172.67 kcal Atomic # 6 Polarization: 34.98 SS G_CDS: 2.26 Total: 37.24 kcal Atomic # 7 Polarization: 46.12 SS G_CDS: -0.75 Total: 45.37 kcal Atomic # 8 Polarization: 9.15 SS G_CDS: -1.97 Total: 7.18 kcal Atomic # 14 Polarization: -14.53 SS G_CDS: 2.20 Total: -12.32 kcal Total: -95.11 -0.09 -95.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.372 kcal (2) G-P(sol) polarization free energy of solvation -95.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds