Wall clock time and date at job start Mon Mar 8 2021 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00899 * 1 3 3 H 1.00904 * 109.47509 * 1 2 4 4 H 1.00898 * 109.47030 * 240.00048 * 1 2 3 5 5 C 1.46902 * 109.46987 * 120.00237 * 1 2 3 6 6 H 1.09003 * 109.47269 * 299.99649 * 5 1 2 7 7 C 1.52994 * 109.47375 * 59.99894 * 5 1 2 8 8 C 1.53002 * 109.47294 * 179.97438 * 7 5 1 9 9 C 1.52998 * 109.46871 * 300.00098 * 8 7 5 10 10 H 1.08995 * 109.47033 * 299.99485 * 9 8 7 11 11 N 1.46507 * 109.46602 * 179.97438 * 9 8 7 12 12 C 1.38996 * 119.99648 * 155.00179 * 11 9 8 13 13 C 1.39331 * 120.01460 * 359.97438 * 12 11 9 14 14 N 1.32073 * 120.17851 * 180.02562 * 13 12 11 15 15 C 1.32005 * 120.21782 * 0.02562 * 14 13 12 16 16 C 1.39636 * 120.02206 * 359.97438 * 15 14 13 17 17 C 1.47634 * 120.08743 * 179.97438 * 16 15 14 18 18 C 1.36040 * 125.94340 * 5.02419 * 17 16 15 19 19 C 1.40825 * 106.73499 * 179.78081 * 18 17 16 20 20 C 1.34800 * 107.04771 * 0.35560 * 19 18 17 21 21 C 1.50699 * 125.65780 * 179.90486 * 20 19 18 22 22 O 1.42903 * 109.47152 * 64.71890 * 21 20 19 23 23 Si 1.86305 * 109.47184 * 184.71362 * 21 20 19 24 24 O 1.34230 * 108.68676 * 359.63997 * 20 19 18 25 25 N 1.32575 * 120.01267 * 180.28167 * 12 11 9 26 26 C 1.52994 * 109.47242 * 59.99870 * 9 8 7 27 27 C 1.52988 * 109.47181 * 299.99787 * 26 9 8 28 28 H 1.09003 * 109.47122 * 59.99665 * 7 5 1 29 29 H 1.09002 * 109.46922 * 300.00135 * 7 5 1 30 30 H 1.09000 * 109.47051 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47191 * 59.99852 * 8 7 5 32 32 H 0.96993 * 120.00554 * 334.99921 * 11 9 8 33 33 H 1.07995 * 119.91133 * 0.02562 * 13 12 11 34 34 H 1.08000 * 119.99279 * 180.02562 * 15 14 13 35 35 H 1.08003 * 126.63040 * 0.02562 * 18 17 16 36 36 H 1.08001 * 126.47447 * 180.24480 * 19 18 17 37 37 H 1.08997 * 109.47198 * 304.71568 * 21 20 19 38 38 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 39 39 H 1.48499 * 109.99670 * 178.68093 * 23 21 20 40 40 H 1.48497 * 110.00233 * 300.00062 * 23 21 20 41 41 H 1.09003 * 109.47122 * 60.00060 * 26 9 8 42 42 H 1.09002 * 109.46922 * 179.97438 * 26 9 8 43 43 H 1.08999 * 109.47278 * 299.99630 * 27 26 9 44 44 H 1.09005 * 109.47160 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8238 5 6 -0.4896 -0.6926 -1.1994 6 1 -0.1264 -0.1787 -2.0895 7 6 0.0203 -2.1350 -1.1994 8 6 -0.4902 -2.8565 -2.4484 9 6 -2.0201 -2.8565 -2.4477 10 1 -2.3831 -3.3702 -1.5575 11 7 -2.5089 -3.5468 -3.6439 12 6 -3.7692 -4.1331 -3.6417 13 6 -4.5676 -4.0650 -2.5019 14 7 -5.7653 -4.6214 -2.4960 15 6 -6.2131 -5.2458 -3.5694 16 6 -5.4203 -5.3193 -4.7165 17 6 -5.9194 -6.0177 -5.9177 18 6 -7.1627 -6.5469 -6.0748 19 6 -7.2045 -7.1078 -7.3659 20 6 -5.9952 -6.9030 -7.9250 21 6 -5.5812 -7.3384 -9.3071 22 8 -6.3609 -6.6401 -10.2800 23 14 -3.7767 -6.9535 -9.5651 24 8 -5.2227 -6.2417 -7.0488 25 7 -4.2095 -4.7627 -4.7221 26 6 -2.5301 -1.4140 -2.4477 27 6 -2.0197 -0.6926 -1.1988 28 1 -0.3429 -2.6488 -0.3094 29 1 1.1104 -2.1350 -1.1994 30 1 -0.1264 -3.8840 -2.4485 31 1 -0.1272 -2.3428 -3.3386 32 1 -1.9532 -3.5947 -4.4374 33 1 -4.2060 -3.5558 -1.6208 34 1 -7.1933 -5.6991 -3.5608 35 1 -7.9642 -6.5353 -5.3510 36 1 -8.0459 -7.6090 -7.8212 37 1 -5.7428 -8.4110 -9.4137 38 1 -6.1481 -6.8716 -11.1945 39 1 -3.3484 -7.4071 -10.9127 40 1 -3.5432 -5.4940 -9.4223 41 1 -2.1672 -0.9003 -3.3379 42 1 -3.6202 -1.4141 -2.4476 43 1 -2.3827 -1.2063 -0.3086 44 1 -2.3827 0.3352 -1.1991 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17085452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:58:36 Heat of formation + Delta-G solvation = 122.159854 kcal Electronic energy + Delta-G solvation = -26207.374507 eV Core-core repulsion = 22438.555953 eV Total energy + Delta-G solvation = -3768.818554 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.81844 -42.13958 -41.03040 -38.31045 -38.10942 -35.75942 -35.09008 -34.23337 -32.50535 -32.02690 -30.58799 -28.86053 -27.39752 -25.17429 -24.76604 -24.02560 -23.16453 -22.59076 -21.58287 -21.32558 -19.16521 -19.08882 -18.85609 -18.48132 -18.27741 -17.89032 -17.52749 -17.36992 -17.21469 -16.43979 -16.28339 -16.09825 -15.85114 -15.29595 -15.12007 -14.54578 -14.31688 -14.20741 -14.14002 -14.01499 -13.82310 -13.67576 -13.39619 -12.91871 -12.83222 -12.69019 -12.67129 -12.47005 -12.24718 -12.20839 -11.97583 -11.52238 -11.32003 -11.01740 -10.70310 -10.35388 -9.62296 -8.86735 -5.04402 -0.74761 0.13163 0.68876 1.07163 1.30152 1.48168 1.55516 1.62890 1.83116 1.84729 2.69403 2.87491 3.11943 3.25153 3.27063 3.31086 3.39235 3.56925 3.63683 3.67070 3.84501 3.86932 3.91510 4.00501 4.02493 4.11874 4.14269 4.24749 4.30624 4.37262 4.50536 4.60272 4.61920 4.62769 4.69781 4.70923 4.81409 4.85410 5.01449 5.05867 5.09314 5.10307 5.23315 5.28389 5.31520 5.66219 5.88383 6.20398 6.39952 6.44498 6.79779 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.002886 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.188727 B = 9700.557594 C =10741.749466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.450 0.550 3 H 0.450 0.550 4 H 0.444 0.556 5 C 0.049 3.951 6 H 0.148 0.852 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.139 3.861 10 H 0.097 0.903 11 N -0.707 5.707 12 C 0.361 3.639 13 C -0.001 4.001 14 N -0.411 5.411 15 C 0.001 3.999 16 C 0.190 3.810 17 C 0.007 3.993 18 C -0.157 4.157 19 C -0.184 4.184 20 C -0.009 4.009 21 C -0.043 4.043 22 O -0.554 6.554 23 Si 0.762 3.238 24 O -0.168 6.168 25 N -0.530 5.530 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.407 0.593 33 H 0.203 0.797 34 H 0.188 0.812 35 H 0.187 0.813 36 H 0.171 0.829 37 H 0.131 0.869 38 H 0.406 0.594 39 H -0.261 1.261 40 H -0.312 1.312 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.440 19.784 25.114 38.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.282 0.718 3 H 0.281 0.719 4 H 0.275 0.725 5 C -0.057 4.057 6 H 0.166 0.834 7 C -0.172 4.172 8 C -0.165 4.165 9 C 0.035 3.965 10 H 0.115 0.885 11 N -0.339 5.339 12 C 0.118 3.882 13 C -0.170 4.170 14 N -0.123 5.123 15 C -0.158 4.158 16 C 0.053 3.947 17 C -0.044 4.044 18 C -0.177 4.177 19 C -0.203 4.203 20 C -0.060 4.060 21 C -0.152 4.152 22 O -0.366 6.366 23 Si 0.666 3.334 24 O -0.065 6.065 25 N -0.254 5.254 26 C -0.180 4.180 27 C -0.175 4.175 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.243 0.757 33 H 0.219 0.781 34 H 0.205 0.795 35 H 0.204 0.796 36 H 0.189 0.811 37 H 0.148 0.852 38 H 0.259 0.741 39 H -0.187 1.187 40 H -0.240 1.240 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 22.038 20.508 25.075 39.179 hybrid contribution -0.883 -0.059 -1.868 2.067 sum 21.155 20.450 23.206 37.474 Atomic orbital electron populations 1.42237 1.22099 1.20922 1.16726 0.71825 0.71906 0.72535 1.22867 0.96635 0.96107 0.90067 0.83410 1.21959 1.03732 0.92452 0.99091 1.21711 0.91775 1.02685 1.00374 1.21559 0.95634 0.92484 0.86786 0.88471 1.44807 1.12853 1.58023 1.18252 1.19579 0.88940 0.89850 0.89783 1.23732 0.90975 1.03372 0.98943 1.68333 1.13321 1.04402 1.26275 1.23413 1.02378 1.02110 0.87913 1.19323 0.90283 0.94107 0.91032 1.20186 0.91855 1.05885 0.86486 1.22255 0.96586 1.00263 0.98588 1.21859 0.98120 1.05145 0.95157 1.21943 0.91649 0.99818 0.92592 1.24015 1.08182 0.99929 0.83041 1.86511 1.61713 1.68519 1.19865 0.93734 0.75312 0.80230 0.84080 1.83995 1.41161 1.58897 1.22456 1.67984 1.15051 1.13677 1.28700 1.22000 1.01418 0.94702 0.99882 1.21975 0.92327 1.04009 0.99213 0.87801 0.87051 0.91138 0.90208 0.75675 0.78070 0.79487 0.79572 0.81131 0.85203 0.74133 1.18673 1.24026 0.91042 0.92424 0.87657 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.76 4.15 -168.68 -0.70 48.06 16 2 H 0.45 -36.99 8.96 -89.69 -0.80 -37.79 16 3 H 0.45 -36.74 8.96 -89.69 -0.80 -37.55 16 4 H 0.44 -36.13 8.90 -89.70 -0.80 -36.93 16 5 C 0.05 -3.27 3.03 44.91 0.14 -3.13 16 6 H 0.15 -9.79 8.14 -2.39 -0.02 -9.81 16 7 C -0.13 7.90 5.43 30.59 0.17 8.07 16 8 C -0.13 5.83 5.39 30.59 0.16 6.00 16 9 C 0.14 -5.62 2.14 44.99 0.10 -5.52 16 10 H 0.10 -4.06 6.46 -2.39 -0.02 -4.08 16 11 N -0.71 19.84 5.24 -324.25 -1.70 18.14 16 12 C 0.36 -6.71 7.64 133.06 1.02 -5.69 16 13 C 0.00 0.02 10.00 84.92 0.85 0.87 16 14 N -0.41 5.88 10.47 -193.58 -2.03 3.85 16 15 C 0.00 -0.01 10.73 85.00 0.91 0.90 16 16 C 0.19 -1.73 6.75 41.75 0.28 -1.45 16 17 C 0.01 -0.05 7.15 24.24 0.17 0.13 16 18 C -0.16 1.64 10.26 22.39 0.23 1.87 16 19 C -0.18 1.62 10.78 22.11 0.24 1.86 16 20 C -0.01 0.06 6.24 24.90 0.16 0.22 16 21 C -0.04 0.50 2.97 71.24 0.21 0.71 16 22 O -0.55 5.21 12.86 -148.98 -1.92 3.30 16 23 Si 0.76 -8.69 32.11 68.60 2.20 -6.49 16 24 O -0.17 0.71 9.07 -5.98 -0.05 0.66 16 25 N -0.53 5.24 10.50 -181.97 -1.91 3.33 16 26 C -0.14 6.15 5.42 30.59 0.17 6.32 16 27 C -0.14 7.90 5.43 30.59 0.17 8.06 16 28 H 0.10 -6.25 8.14 -2.39 -0.02 -6.27 16 29 H 0.11 -6.76 8.14 -2.39 -0.02 -6.77 16 30 H 0.07 -2.84 8.14 -2.39 -0.02 -2.86 16 31 H 0.08 -3.57 8.14 -2.39 -0.02 -3.59 16 32 H 0.41 -10.83 8.73 -92.71 -0.81 -11.64 16 33 H 0.20 -6.15 6.07 -2.91 -0.02 -6.17 16 34 H 0.19 -3.24 7.00 -2.91 -0.02 -3.26 16 35 H 0.19 -3.20 7.28 -2.91 -0.02 -3.22 16 36 H 0.17 -2.09 8.06 -2.91 -0.02 -2.11 16 37 H 0.13 -2.32 7.96 -2.39 -0.02 -2.34 16 38 H 0.41 -7.44 8.74 -74.06 -0.65 -8.08 16 39 H -0.26 2.56 7.11 99.48 0.71 3.27 16 40 H -0.31 0.47 7.11 99.48 0.71 1.18 16 41 H 0.07 -2.94 8.14 -2.39 -0.02 -2.96 16 42 H 0.06 -2.10 7.68 -2.39 -0.02 -2.12 16 43 H 0.10 -6.27 8.14 -2.39 -0.02 -6.29 16 44 H 0.10 -6.16 8.14 -2.38 -0.02 -6.18 16 Total: 1.00 -101.66 357.94 -3.88 -105.54 By element: Atomic # 1 Polarization: -192.83 SS G_CDS: -2.74 Total: -195.57 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 4.96 Total: 19.20 kcal Atomic # 7 Polarization: 79.71 SS G_CDS: -6.34 Total: 73.37 kcal Atomic # 8 Polarization: 5.92 SS G_CDS: -1.97 Total: 3.95 kcal Atomic # 14 Polarization: -8.69 SS G_CDS: 2.20 Total: -6.49 kcal Total: -101.66 -3.88 -105.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17085452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.698 kcal (2) G-P(sol) polarization free energy of solvation -101.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds