Wall clock time and date at job start Mon Mar 8 2021 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00893 * 1 3 3 H 1.00900 * 109.46635 * 1 2 4 4 H 1.00894 * 109.47394 * 240.00310 * 1 2 3 5 5 C 1.46897 * 109.47679 * 119.99323 * 1 2 3 6 6 H 1.08999 * 109.47488 * 180.02562 * 5 1 2 7 7 C 1.53006 * 109.47317 * 300.00706 * 5 1 2 8 8 C 1.52995 * 109.47151 * 179.97438 * 7 5 1 9 9 C 1.53001 * 109.47339 * 300.00058 * 8 7 5 10 10 H 1.08999 * 109.46886 * 300.00055 * 9 8 7 11 11 N 1.46507 * 109.47359 * 179.97438 * 9 8 7 12 12 C 1.38416 * 119.99633 * 85.00035 * 11 9 8 13 13 N 1.32525 * 119.14249 * 359.97438 * 12 11 9 14 14 C 1.32476 * 121.04082 * 180.02562 * 13 12 11 15 15 C 1.38164 * 119.32457 * 359.74118 * 14 13 12 16 16 C 1.40106 * 118.42118 * 0.52221 * 15 14 13 17 17 C 1.47539 * 120.53140 * 179.75269 * 16 15 14 18 18 C 1.36106 * 125.94193 * 179.70309 * 17 16 15 19 19 C 1.40746 * 106.73132 * 179.82196 * 18 17 16 20 20 C 1.34871 * 107.05454 * 0.34976 * 19 18 17 21 21 C 1.50699 * 125.65351 * 179.90749 * 20 19 18 22 22 O 1.42901 * 109.46830 * 299.71881 * 21 20 19 23 23 Si 1.86298 * 109.46950 * 179.72318 * 21 20 19 24 24 O 1.34167 * 108.69241 * 359.64632 * 20 19 18 25 25 N 1.32345 * 119.13540 * 180.02562 * 12 11 9 26 26 C 1.52998 * 109.47241 * 60.00020 * 9 8 7 27 27 C 1.53003 * 109.46619 * 60.00290 * 5 1 2 28 28 H 1.08998 * 109.46858 * 299.99497 * 7 5 1 29 29 H 1.08999 * 109.46793 * 59.99850 * 7 5 1 30 30 H 1.09002 * 109.47364 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47177 * 59.99935 * 8 7 5 32 32 H 0.96992 * 119.99722 * 265.00188 * 11 9 8 33 33 H 1.08004 * 120.33410 * 179.97438 * 14 13 12 34 34 H 1.07993 * 120.78817 * 180.27935 * 15 14 13 35 35 H 1.07998 * 126.63504 * 0.02562 * 18 17 16 36 36 H 1.08005 * 126.47541 * 180.24665 * 19 18 17 37 37 H 1.08991 * 109.47351 * 59.72028 * 21 20 19 38 38 H 0.96708 * 114.00246 * 299.99864 * 22 21 20 39 39 H 1.48506 * 109.99834 * 180.02562 * 23 21 20 40 40 H 1.48502 * 110.00011 * 301.31529 * 23 21 20 41 41 H 1.08999 * 109.47152 * 60.00198 * 26 9 8 42 42 H 1.08998 * 109.47052 * 180.02562 * 26 9 8 43 43 H 1.08996 * 109.47179 * 60.00538 * 27 5 1 44 44 H 1.08999 * 109.47239 * 300.00212 * 27 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0089 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4756 0.8238 5 6 -0.4898 -0.6923 -1.1995 6 1 -1.5798 -0.6919 -1.1997 7 6 0.0203 0.0289 -2.4487 8 6 -0.4893 -0.6925 -3.6979 9 6 0.0209 -2.1349 -3.6978 10 1 1.1109 -2.1347 -3.6976 11 7 -0.4676 -2.8260 -4.8937 12 6 0.2273 -2.7205 -6.0862 13 7 1.3320 -1.9897 -6.1270 14 6 2.0260 -1.8626 -7.2482 15 6 1.5912 -2.5078 -8.3900 16 6 0.4171 -3.2691 -8.3196 17 6 -0.0924 -3.9730 -9.5119 18 6 -1.2128 -4.7438 -9.5666 19 6 -1.3191 -5.2109 -10.8901 20 6 -0.2656 -4.7147 -11.5704 21 6 0.0315 -4.9563 -13.0280 22 8 0.2067 -6.3567 -13.2525 23 14 1.5894 -4.0516 -13.5024 24 8 0.4710 -3.9655 -10.7359 25 7 -0.2296 -3.3515 -7.1561 26 6 -0.4891 -2.8562 -2.4486 27 6 0.0202 -2.1349 -1.1995 28 1 -0.3430 1.0566 -2.4487 29 1 1.1103 0.0288 -2.4487 30 1 -0.1264 -0.1784 -4.5880 31 1 -1.5793 -0.6928 -3.6981 32 1 -1.2778 -3.3573 -4.8498 33 1 2.9245 -1.2637 -7.2687 34 1 2.1411 -2.4241 -9.3156 35 1 -1.8911 -4.9535 -8.7528 36 1 -2.0964 -5.8479 -11.2857 37 1 -0.7986 -4.5924 -13.6332 38 1 0.9304 -6.7489 -12.7449 39 1 1.8930 -4.2814 -14.9378 40 1 1.4314 -2.5979 -13.2437 41 1 -1.5791 -2.8564 -2.4488 42 1 -0.1252 -3.8836 -2.4483 43 1 -0.3432 -2.6487 -0.3096 44 1 1.1101 -2.1349 -1.1995 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17085550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:59:50 Heat of formation + Delta-G solvation = 128.345414 kcal Electronic energy + Delta-G solvation = -26095.923471 eV Core-core repulsion = 22327.373143 eV Total energy + Delta-G solvation = -3768.550328 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.87988 -41.98419 -40.99737 -38.16892 -38.00011 -35.36242 -35.10158 -34.09403 -32.36012 -31.99471 -31.01608 -28.89438 -27.48737 -25.15731 -24.51142 -24.02833 -22.97775 -22.86677 -21.60030 -21.37126 -19.56365 -19.04718 -18.47214 -18.29159 -18.21288 -17.69096 -17.43382 -17.26146 -16.61395 -16.40087 -16.28151 -16.10300 -15.73577 -15.23426 -15.07421 -14.87552 -14.41581 -14.17365 -14.15311 -14.02723 -13.75830 -13.72244 -13.37703 -12.90415 -12.81974 -12.58870 -12.27370 -12.25630 -12.17904 -12.06340 -11.96583 -11.49047 -11.25741 -11.07580 -10.68932 -10.33698 -9.62778 -9.09846 -5.05561 -0.66845 0.13694 0.73577 1.07497 1.15766 1.48314 1.56677 1.65305 1.87178 1.94088 2.82158 2.93131 3.12267 3.25351 3.27194 3.33737 3.53655 3.64009 3.75236 3.80565 3.86041 3.94311 3.97085 4.05447 4.14266 4.21112 4.26097 4.29756 4.37656 4.43240 4.51486 4.61851 4.63938 4.64315 4.73634 4.79925 4.84544 4.89438 4.99923 5.07726 5.09995 5.12561 5.25993 5.27049 5.36252 5.64100 5.86413 6.05039 6.30044 6.57262 7.18492 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.002473 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.055335 B =11320.167685 C =11818.121373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.443 0.557 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.052 3.948 6 H 0.152 0.848 7 C -0.134 4.134 8 C -0.130 4.130 9 C 0.154 3.846 10 H 0.084 0.916 11 N -0.694 5.694 12 C 0.559 3.441 13 N -0.569 5.569 14 C 0.201 3.799 15 C -0.278 4.278 16 C 0.278 3.722 17 C -0.004 4.004 18 C -0.141 4.141 19 C -0.193 4.193 20 C -0.030 4.030 21 C -0.031 4.031 22 O -0.540 6.540 23 Si 0.782 3.218 24 O -0.160 6.160 25 N -0.582 5.582 26 C -0.128 4.128 27 C -0.134 4.134 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.415 0.585 33 H 0.207 0.793 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.138 0.862 38 H 0.401 0.599 39 H -0.283 1.283 40 H -0.287 1.287 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 14.218 37.768 40.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.054 4.054 6 H 0.170 0.830 7 C -0.173 4.173 8 C -0.170 4.170 9 C 0.049 3.951 10 H 0.102 0.898 11 N -0.331 5.331 12 C 0.202 3.798 13 N -0.292 5.292 14 C 0.034 3.966 15 C -0.303 4.303 16 C 0.133 3.867 17 C -0.055 4.055 18 C -0.162 4.162 19 C -0.212 4.212 20 C -0.082 4.082 21 C -0.141 4.141 22 O -0.348 6.348 23 Si 0.685 3.315 24 O -0.056 6.056 25 N -0.307 5.307 26 C -0.166 4.166 27 C -0.172 4.172 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.224 0.776 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.155 0.845 38 H 0.251 0.749 39 H -0.210 1.210 40 H -0.214 1.214 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.798 14.966 37.636 40.511 hybrid contribution -0.801 -0.455 -1.318 1.608 sum -0.003 14.511 36.318 39.110 Atomic orbital electron populations 1.42224 1.22023 1.21049 1.16602 0.72637 0.71877 0.71747 1.22849 1.04651 0.93325 0.84610 0.83023 1.21925 1.03527 1.00392 0.91420 1.21848 1.01488 0.94796 0.98853 1.21285 0.99870 0.91469 0.82439 0.89759 1.44369 1.28601 1.54877 1.05231 1.19428 0.86933 0.86833 0.86642 1.67998 1.08422 1.22672 1.30117 1.23473 0.96725 0.90979 0.85396 1.22816 0.99578 1.04285 1.03619 1.18278 0.90252 0.90380 0.87756 1.19756 0.96672 1.05236 0.83801 1.22144 0.97649 0.98166 0.98267 1.21863 1.00762 1.04895 0.93660 1.23341 0.93410 0.97119 0.94340 1.24575 1.12703 0.89440 0.87378 1.86558 1.59137 1.19687 1.69426 0.93351 0.80760 0.77086 0.80258 1.83880 1.47000 1.56965 1.17801 1.67541 1.36202 1.27891 0.99082 1.21738 1.02558 0.99857 0.92496 1.21939 1.03652 0.92656 0.98938 0.87759 0.88570 0.93446 0.91149 0.74693 0.77594 0.82163 0.81812 0.81698 0.84494 0.74857 1.20994 1.21390 0.89784 0.91427 0.86731 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.64 4.15 -168.67 -0.70 46.94 16 2 H 0.44 -35.13 8.90 -89.70 -0.80 -35.93 16 3 H 0.45 -36.14 8.96 -89.69 -0.80 -36.94 16 4 H 0.45 -36.50 8.96 -89.70 -0.80 -37.30 16 5 C 0.05 -3.31 3.03 44.92 0.14 -3.18 16 6 H 0.15 -9.84 8.14 -2.39 -0.02 -9.86 16 7 C -0.13 7.25 5.43 30.59 0.17 7.42 16 8 C -0.13 5.15 5.51 30.59 0.17 5.32 16 9 C 0.15 -5.51 2.45 44.99 0.11 -5.40 16 10 H 0.08 -2.79 7.50 -2.39 -0.02 -2.80 16 11 N -0.69 17.76 5.22 -330.50 -1.73 16.04 16 12 C 0.56 -9.56 8.40 261.53 2.20 -7.36 16 13 N -0.57 10.73 9.19 -198.27 -1.82 8.91 16 14 C 0.20 -3.96 11.28 84.58 0.95 -3.01 16 15 C -0.28 4.34 9.84 22.71 0.22 4.56 16 16 C 0.28 -3.05 6.78 41.82 0.28 -2.77 16 17 C 0.00 0.04 7.05 24.23 0.17 0.21 16 18 C -0.14 1.37 10.62 22.39 0.24 1.60 16 19 C -0.19 1.96 10.77 22.11 0.24 2.20 16 20 C -0.03 0.33 6.22 24.91 0.15 0.49 16 21 C -0.03 0.40 2.98 71.24 0.21 0.62 16 22 O -0.54 6.90 12.87 -148.98 -1.92 4.98 16 23 Si 0.78 -10.64 32.10 68.60 2.20 -8.44 16 24 O -0.16 1.60 8.86 -5.59 -0.05 1.55 16 25 N -0.58 6.93 10.20 -187.29 -1.91 5.02 16 26 C -0.13 5.54 5.39 30.58 0.16 5.70 16 27 C -0.13 7.52 5.43 30.58 0.17 7.69 16 28 H 0.10 -5.81 8.14 -2.39 -0.02 -5.83 16 29 H 0.10 -5.21 8.14 -2.39 -0.02 -5.23 16 30 H 0.05 -1.43 8.14 -2.39 -0.02 -1.45 16 31 H 0.07 -2.71 8.14 -2.39 -0.02 -2.73 16 32 H 0.42 -10.91 8.71 -92.71 -0.81 -11.72 16 33 H 0.21 -5.65 8.06 -2.91 -0.02 -5.67 16 34 H 0.16 -2.93 7.98 -2.91 -0.02 -2.95 16 35 H 0.16 -1.90 8.06 -2.91 -0.02 -1.93 16 36 H 0.17 -2.02 8.06 -2.91 -0.02 -2.04 16 37 H 0.14 -1.87 7.96 -2.39 -0.02 -1.89 16 38 H 0.40 -8.28 8.70 -74.05 -0.64 -8.92 16 39 H -0.28 2.01 7.11 99.48 0.71 2.71 16 40 H -0.29 2.23 7.11 99.48 0.71 2.93 16 41 H 0.08 -3.65 8.14 -2.39 -0.02 -3.67 16 42 H 0.07 -2.55 8.14 -2.39 -0.02 -2.56 16 43 H 0.11 -6.77 8.14 -2.39 -0.02 -6.79 16 44 H 0.10 -5.49 8.14 -2.39 -0.02 -5.50 16 Total: 1.00 -93.89 363.12 -3.09 -96.98 By element: Atomic # 1 Polarization: -183.32 SS G_CDS: -2.75 Total: -186.07 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 5.58 Total: 14.10 kcal Atomic # 7 Polarization: 83.06 SS G_CDS: -6.16 Total: 76.90 kcal Atomic # 8 Polarization: 8.50 SS G_CDS: -1.97 Total: 6.53 kcal Atomic # 14 Polarization: -10.64 SS G_CDS: 2.20 Total: -8.44 kcal Total: -93.89 -3.09 -96.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17085550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.328 kcal (2) G-P(sol) polarization free energy of solvation -93.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds