Wall clock time and date at job start Mon Mar 8 2021 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00900 * 109.46950 * 1 2 4 4 H 1.00901 * 109.47353 * 239.99483 * 1 2 3 5 5 C 1.46903 * 109.46492 * 119.99218 * 1 2 3 6 6 H 1.08999 * 109.46372 * 180.02562 * 5 1 2 7 7 C 1.52993 * 109.47405 * 300.00536 * 5 1 2 8 8 C 1.53007 * 109.47160 * 180.02562 * 7 5 1 9 9 C 1.53003 * 109.46425 * 299.99686 * 8 7 5 10 10 H 1.08998 * 109.47179 * 299.99914 * 9 8 7 11 11 N 1.46505 * 109.46759 * 179.97438 * 9 8 7 12 12 C 1.38017 * 119.99701 * 85.00177 * 11 9 8 13 13 N 1.33124 * 120.02720 * 359.97438 * 12 11 9 14 14 C 1.32191 * 120.17110 * 179.72480 * 13 12 11 15 15 N 1.32062 * 120.22437 * 0.02665 * 14 13 12 16 16 C 1.33474 * 120.04447 * 359.97220 * 15 14 13 17 17 C 1.47403 * 120.08504 * 180.02562 * 16 15 14 18 18 C 1.36172 * 125.95325 * 359.72063 * 17 16 15 19 19 C 1.40657 * 106.72702 * 179.85089 * 18 17 16 20 20 C 1.34933 * 107.06617 * 0.41087 * 19 18 17 21 21 C 1.50697 * 125.64630 * 179.76962 * 20 19 18 22 22 O 1.42901 * 109.47265 * 64.99565 * 21 20 19 23 23 Si 1.86295 * 109.47077 * 184.99511 * 21 20 19 24 24 O 1.34100 * 108.70542 * 359.74088 * 20 19 18 25 25 N 1.32808 * 120.02577 * 179.72729 * 12 11 9 26 26 C 1.52997 * 109.47516 * 60.00203 * 9 8 7 27 27 C 1.53002 * 109.47245 * 299.99883 * 26 9 8 28 28 H 1.09004 * 109.46882 * 299.99881 * 7 5 1 29 29 H 1.08998 * 109.47401 * 59.99963 * 7 5 1 30 30 H 1.08999 * 109.46959 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.46873 * 59.99316 * 8 7 5 32 32 H 0.97000 * 120.00465 * 264.99850 * 11 9 8 33 33 H 1.08006 * 119.89073 * 180.02562 * 14 13 12 34 34 H 1.07994 * 126.63525 * 359.97438 * 18 17 16 35 35 H 1.08003 * 126.46627 * 180.15063 * 19 18 17 36 36 H 1.08997 * 109.47254 * 304.99563 * 21 20 19 37 37 H 0.96703 * 114.00075 * 60.00357 * 22 21 20 38 38 H 1.48501 * 109.99950 * 58.68149 * 23 21 20 39 39 H 1.48499 * 110.00216 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.46812 * 59.99362 * 26 9 8 41 41 H 1.08997 * 109.47429 * 179.97438 * 26 9 8 42 42 H 1.08993 * 109.47486 * 179.97438 * 27 26 9 43 43 H 1.08998 * 109.46893 * 299.99947 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4895 -0.6924 -1.1996 6 1 -1.5795 -0.6920 -1.1998 7 6 0.0206 0.0289 -2.4487 8 6 -0.4898 -0.6919 -3.6981 9 6 0.0198 -2.1346 -3.6983 10 1 1.1098 -2.1349 -3.6984 11 7 -0.4694 -2.8250 -4.8943 12 6 0.2231 -2.7199 -6.0835 13 7 1.3354 -1.9909 -6.1445 14 6 2.0039 -1.8928 -7.2807 15 7 1.5725 -2.5165 -8.3619 16 6 0.4584 -3.2497 -8.3106 17 6 -0.0236 -3.9467 -9.5167 18 6 0.5666 -3.9225 -10.7437 19 6 -0.2236 -4.7223 -11.5888 20 6 -1.2527 -5.1844 -10.8484 21 6 -2.3581 -6.0809 -11.3438 22 8 -1.8130 -7.3487 -11.7149 23 14 -3.6178 -6.3183 -9.9920 24 8 -1.1285 -4.7144 -9.5987 25 7 -0.2168 -3.3500 -7.1667 26 6 -0.4903 -2.8559 -2.4492 27 6 0.0200 -2.1351 -1.1998 28 1 -0.3428 1.0566 -2.4486 29 1 1.1106 0.0289 -2.4486 30 1 -0.1267 -0.1777 -4.5880 31 1 -1.5798 -0.6916 -3.6979 32 1 -1.2800 -3.3560 -4.8504 33 1 2.9060 -1.3005 -7.3250 34 1 1.4682 -3.3934 -11.0148 35 1 -0.0433 -4.9246 -12.6343 36 1 -2.8363 -5.6235 -12.2099 37 1 -1.3711 -7.8138 -10.9914 38 1 -4.1691 -5.0040 -9.5750 39 1 -4.7137 -7.2001 -10.4682 40 1 -1.5803 -2.8555 -2.4491 41 1 -0.1276 -3.8838 -2.4496 42 1 -0.3437 -2.6487 -0.3100 43 1 1.1100 -2.1354 -1.2000 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:01:16 Heat of formation + Delta-G solvation = 145.600779 kcal Electronic energy + Delta-G solvation = -26350.675493 eV Core-core repulsion = 22517.447503 eV Total energy + Delta-G solvation = -3833.227990 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.92967 -42.65335 -41.09928 -38.45221 -38.04929 -35.91814 -35.32331 -34.30610 -33.13292 -32.02351 -31.64260 -29.25239 -27.85904 -25.78062 -24.96451 -24.10286 -23.22436 -22.91171 -21.72864 -21.50124 -19.95297 -19.62999 -18.72081 -18.46419 -18.29415 -17.80023 -17.52191 -17.42222 -16.80279 -16.64840 -16.50089 -15.77337 -15.63554 -15.38213 -15.30904 -14.99158 -14.43944 -14.26087 -14.16123 -14.07891 -13.98122 -13.91326 -13.43152 -12.99957 -12.91378 -12.79192 -12.45011 -12.39834 -12.28412 -12.25294 -11.60213 -11.41906 -11.11780 -10.90364 -10.83382 -10.70608 -9.79035 -9.63931 -5.07452 -0.88250 -0.03476 0.62890 1.06268 1.14871 1.41071 1.41935 1.63001 1.65851 1.83835 2.47713 2.72706 2.88911 3.10683 3.15763 3.25714 3.30982 3.60441 3.65555 3.70432 3.82969 3.86641 3.93043 4.00164 4.10809 4.20992 4.25081 4.35502 4.47153 4.50109 4.55305 4.59735 4.62777 4.70202 4.77843 4.82858 4.92806 4.98488 5.06125 5.07946 5.18239 5.20176 5.25117 5.29084 5.38527 5.78155 5.88237 6.25145 6.55760 7.13160 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.002893 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.535616 B = 9677.481630 C =10710.584455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.444 0.556 3 H 0.450 0.550 4 H 0.451 0.549 5 C 0.051 3.949 6 H 0.153 0.847 7 C -0.134 4.134 8 C -0.131 4.131 9 C 0.148 3.852 10 H 0.090 0.910 11 N -0.673 5.673 12 C 0.589 3.411 13 N -0.601 5.601 14 C 0.387 3.613 15 N -0.596 5.596 16 C 0.471 3.529 17 C -0.008 4.008 18 C -0.113 4.113 19 C -0.192 4.192 20 C -0.024 4.024 21 C -0.030 4.030 22 O -0.538 6.538 23 Si 0.777 3.223 24 O -0.155 6.155 25 N -0.618 5.618 26 C -0.128 4.128 27 C -0.133 4.133 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.420 0.580 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.143 0.857 37 H 0.400 0.600 38 H -0.294 1.294 39 H -0.277 1.277 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 15.586 36.783 40.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.274 0.726 3 H 0.281 0.719 4 H 0.283 0.717 5 C -0.055 4.055 6 H 0.170 0.830 7 C -0.172 4.172 8 C -0.170 4.170 9 C 0.044 3.956 10 H 0.108 0.892 11 N -0.310 5.310 12 C 0.224 3.776 13 N -0.331 5.331 14 C 0.090 3.910 15 N -0.324 5.324 16 C 0.197 3.803 17 C -0.059 4.059 18 C -0.136 4.136 19 C -0.211 4.211 20 C -0.077 4.077 21 C -0.140 4.140 22 O -0.346 6.346 23 Si 0.682 3.318 24 O -0.050 6.050 25 N -0.348 5.348 26 C -0.167 4.167 27 C -0.172 4.172 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.259 0.741 33 H 0.265 0.735 34 H 0.194 0.806 35 H 0.191 0.809 36 H 0.160 0.840 37 H 0.251 0.749 38 H -0.221 1.221 39 H -0.204 1.204 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.185 15.772 36.788 40.086 hybrid contribution 0.069 0.129 -1.212 1.221 sum 2.254 15.900 35.576 39.033 Atomic orbital electron populations 1.42227 1.22044 1.21053 1.16603 0.72615 0.71881 0.71734 1.22861 1.04711 0.93353 0.84606 0.82979 1.21924 1.03633 1.00411 0.91271 1.21854 1.01655 0.94443 0.99072 1.21460 1.00279 0.91694 0.82175 0.89213 1.44530 1.28079 1.53345 1.05023 1.19697 0.86190 0.84714 0.86969 1.68697 1.09565 1.24573 1.30248 1.26004 0.96356 0.88014 0.80588 1.68967 1.14978 1.14436 1.33977 1.19614 0.85991 0.87014 0.87690 1.19176 0.90757 1.02469 0.93518 1.22249 1.01447 0.99409 0.90479 1.21929 0.95641 1.01011 1.02556 1.23518 1.00987 1.01182 0.81978 1.24590 0.97308 0.83697 1.08435 1.86564 1.77316 1.28783 1.41942 0.93300 0.76672 0.80438 0.81421 1.83968 1.38855 1.51398 1.30829 1.68688 1.36691 1.29101 1.00295 1.21757 1.02738 0.99956 0.92209 1.21946 1.03725 0.92595 0.98887 0.87703 0.88398 0.93361 0.90953 0.74088 0.73457 0.80623 0.80939 0.84042 0.74891 1.22098 1.20355 0.89553 0.91136 0.86641 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.21 4.15 -168.67 -0.70 47.51 16 2 H 0.44 -35.54 8.90 -89.69 -0.80 -36.34 16 3 H 0.45 -36.47 8.96 -89.69 -0.80 -37.28 16 4 H 0.45 -36.87 8.96 -89.69 -0.80 -37.67 16 5 C 0.05 -3.31 3.02 44.91 0.14 -3.17 16 6 H 0.15 -10.04 8.14 -2.39 -0.02 -10.06 16 7 C -0.13 7.41 5.43 30.59 0.17 7.58 16 8 C -0.13 5.35 5.51 30.60 0.17 5.52 16 9 C 0.15 -5.53 2.46 44.99 0.11 -5.42 16 10 H 0.09 -3.14 7.54 -2.39 -0.02 -3.16 16 11 N -0.67 18.05 5.21 -330.04 -1.72 16.33 16 12 C 0.59 -10.21 8.45 261.26 2.21 -8.00 16 13 N -0.60 11.59 9.34 -202.59 -1.89 9.70 16 14 C 0.39 -7.04 12.39 180.68 2.24 -4.80 16 15 N -0.60 6.89 10.21 -193.95 -1.98 4.91 16 16 C 0.47 -4.01 7.63 136.81 1.04 -2.97 16 17 C -0.01 0.06 7.17 24.20 0.17 0.23 16 18 C -0.11 1.11 10.60 22.38 0.24 1.35 16 19 C -0.19 2.04 10.78 22.10 0.24 2.28 16 20 C -0.02 0.25 6.21 24.92 0.15 0.40 16 21 C -0.03 0.39 2.98 71.24 0.21 0.61 16 22 O -0.54 7.02 12.88 -148.98 -1.92 5.10 16 23 Si 0.78 -10.31 32.11 68.60 2.20 -8.11 16 24 O -0.15 1.23 9.06 -5.35 -0.05 1.18 16 25 N -0.62 6.50 10.50 -191.97 -2.02 4.48 16 26 C -0.13 5.76 5.39 30.59 0.16 5.92 16 27 C -0.13 7.69 5.43 30.60 0.17 7.85 16 28 H 0.10 -5.95 8.14 -2.39 -0.02 -5.97 16 29 H 0.10 -5.44 8.14 -2.39 -0.02 -5.46 16 30 H 0.05 -1.52 8.14 -2.39 -0.02 -1.54 16 31 H 0.07 -2.89 8.14 -2.39 -0.02 -2.91 16 32 H 0.42 -11.62 8.72 -92.71 -0.81 -12.43 16 33 H 0.25 -6.71 8.06 -2.91 -0.02 -6.73 16 34 H 0.18 -2.22 8.06 -2.91 -0.02 -2.24 16 35 H 0.17 -2.32 8.06 -2.91 -0.02 -2.34 16 36 H 0.14 -2.01 7.96 -2.39 -0.02 -2.03 16 37 H 0.40 -8.31 8.70 -74.06 -0.64 -8.95 16 38 H -0.29 1.94 7.11 99.48 0.71 2.65 16 39 H -0.28 2.14 7.11 99.48 0.71 2.85 16 40 H 0.09 -3.90 8.14 -2.39 -0.02 -3.92 16 41 H 0.07 -2.79 8.14 -2.39 -0.02 -2.81 16 42 H 0.12 -6.97 8.14 -2.39 -0.02 -6.98 16 43 H 0.10 -5.69 8.14 -2.39 -0.02 -5.71 16 Total: 1.00 -97.18 358.33 -3.38 -100.56 By element: Atomic # 1 Polarization: -186.32 SS G_CDS: -2.73 Total: -189.05 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 7.42 Total: 7.38 kcal Atomic # 7 Polarization: 91.24 SS G_CDS: -8.31 Total: 82.93 kcal Atomic # 8 Polarization: 8.26 SS G_CDS: -1.97 Total: 6.29 kcal Atomic # 14 Polarization: -10.31 SS G_CDS: 2.20 Total: -8.11 kcal Total: -97.18 -3.38 -100.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.162 kcal (2) G-P(sol) polarization free energy of solvation -97.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds