Wall clock time and date at job start Mon Mar 8 2021 07:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00899 * 1 3 3 H 1.00903 * 109.47605 * 1 2 4 4 H 1.00898 * 109.46896 * 239.99764 * 1 2 3 5 5 C 1.46904 * 109.47529 * 119.99932 * 1 2 3 6 6 H 1.08998 * 109.47320 * 300.00465 * 5 1 2 7 7 C 1.53005 * 109.46813 * 60.00012 * 5 1 2 8 8 C 1.52997 * 109.47027 * 180.02562 * 7 5 1 9 9 C 1.53001 * 109.47196 * 299.99618 * 8 7 5 10 10 H 1.08998 * 109.47385 * 300.00663 * 9 8 7 11 11 N 1.46494 * 109.47199 * 179.97438 * 9 8 7 12 12 C 1.34778 * 119.99724 * 155.00322 * 11 9 8 13 13 O 1.21557 * 120.00424 * 359.97438 * 12 11 9 14 14 C 1.47861 * 119.99706 * 180.02562 * 12 11 9 15 15 C 1.40043 * 120.04254 * 179.97438 * 14 12 11 16 16 C 1.38315 * 118.04513 * 179.97438 * 15 14 12 17 17 C 1.40080 * 117.99703 * 0.02562 * 16 15 14 18 18 C 1.47390 * 120.09407 * 179.97438 * 17 16 15 19 19 C 1.36213 * 125.95351 * 180.02562 * 18 17 16 20 20 C 1.40691 * 106.73373 * 179.77613 * 19 18 17 21 21 C 1.34913 * 107.06079 * 0.37294 * 20 19 18 22 22 C 1.50699 * 125.64692 * 179.88523 * 21 20 19 23 23 O 1.42898 * 109.46964 * 299.71992 * 22 21 20 24 24 Si 1.86301 * 109.47146 * 179.71910 * 22 21 20 25 25 O 1.34171 * 108.70858 * 359.62725 * 21 20 19 26 26 N 1.33325 * 119.80541 * 0.27979 * 17 16 15 27 27 N 1.28361 * 122.08359 * 359.41140 * 26 17 16 28 28 C 1.53005 * 109.46821 * 60.00256 * 9 8 7 29 29 C 1.52992 * 109.47432 * 179.97438 * 5 1 2 30 30 H 1.08998 * 109.47408 * 59.99673 * 7 5 1 31 31 H 1.09005 * 109.46800 * 299.99891 * 7 5 1 32 32 H 1.09000 * 109.46857 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47171 * 59.99780 * 8 7 5 34 34 H 0.96997 * 120.00679 * 335.00316 * 11 9 8 35 35 H 1.08001 * 120.97552 * 0.02562 * 15 14 12 36 36 H 1.07997 * 120.99845 * 180.02562 * 16 15 14 37 37 H 1.08003 * 126.63380 * 359.97219 * 19 18 17 38 38 H 1.08002 * 126.47341 * 180.24524 * 20 19 18 39 39 H 1.09002 * 109.46959 * 59.71963 * 22 21 20 40 40 H 0.96698 * 113.99898 * 299.99550 * 23 22 21 41 41 H 1.48504 * 110.00019 * 58.68329 * 24 22 21 42 42 H 1.48503 * 110.00152 * 180.02562 * 24 22 21 43 43 H 1.08999 * 109.47325 * 59.99973 * 28 9 8 44 44 H 1.08996 * 109.46908 * 180.02562 * 28 9 8 45 45 H 1.08999 * 109.47269 * 300.00125 * 29 5 1 46 46 H 1.09000 * 109.47054 * 60.00439 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4898 -0.6925 -1.1994 6 1 -0.1264 -0.1787 -2.0894 7 6 0.0202 -2.1350 -1.1994 8 6 -0.4893 -2.8561 -2.4489 9 6 -2.0193 -2.8562 -2.4495 10 1 -2.3830 -3.3700 -1.5597 11 7 -2.5072 -3.5460 -3.6462 12 6 -3.7292 -4.1146 -3.6451 13 8 -4.4263 -4.0553 -2.6510 14 6 -4.2214 -4.8114 -4.8528 15 6 -5.4908 -5.4029 -4.8525 16 6 -5.9099 -6.0435 -6.0045 17 6 -5.0384 -6.0617 -7.1010 18 6 -5.4379 -6.7318 -8.3515 19 6 -4.6883 -6.8219 -9.4853 20 6 -5.4521 -7.5453 -10.4194 21 6 -6.6220 -7.8521 -9.8215 22 6 -7.7541 -8.6229 -10.4502 23 8 -8.2220 -7.9244 -11.6057 24 14 -9.1451 -8.7949 -9.2229 25 8 -6.6084 -7.3621 -8.5725 26 7 -3.8441 -5.4764 -7.0081 27 7 -3.4596 -4.8776 -5.9398 28 6 -2.5293 -1.4136 -2.4495 29 6 -2.0197 -0.6930 -1.1991 30 1 -0.3430 -2.6489 -0.3094 31 1 1.1103 -2.1350 -1.1995 32 1 -0.1256 -3.8836 -2.4491 33 1 -0.1257 -2.3421 -3.3387 34 1 -1.9509 -3.5937 -4.4393 35 1 -6.1241 -5.3595 -3.9788 36 1 -6.8799 -6.5154 -6.0570 37 1 -3.6978 -6.4189 -9.6367 38 1 -5.1584 -7.8043 -11.4260 39 1 -7.4021 -9.6125 -10.7415 40 1 -8.5511 -7.0342 -11.4207 41 1 -9.6127 -7.4524 -8.7936 42 1 -10.2676 -9.5539 -9.8306 43 1 -2.1657 -0.8997 -3.3393 44 1 -3.6193 -1.4136 -2.4494 45 1 -2.3827 -1.2071 -0.3091 46 1 -2.3834 0.3345 -1.1989 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17088014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:25:04 Heat of formation + Delta-G solvation = 89.758739 kcal Electronic energy + Delta-G solvation = -29204.679697 eV Core-core repulsion = 24987.547792 eV Total energy + Delta-G solvation = -4217.131904 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.92258 -42.41006 -41.35266 -40.29227 -38.22178 -37.47274 -35.23617 -34.64747 -34.33223 -33.91037 -32.01356 -31.35731 -29.51843 -27.62490 -26.33743 -25.23806 -24.19377 -23.60920 -22.96454 -22.09141 -21.73198 -21.53585 -19.73799 -19.31968 -18.74318 -18.47966 -18.29449 -18.14110 -17.73476 -17.49933 -17.20113 -16.85737 -16.79586 -16.14402 -15.97772 -15.62292 -15.40712 -15.11552 -14.96535 -14.78228 -14.46161 -14.19022 -14.16898 -14.04843 -13.86968 -13.68625 -13.37209 -13.14504 -12.96049 -12.89300 -12.49932 -12.26073 -12.19936 -11.96411 -11.69884 -11.59772 -11.55243 -11.39200 -11.18454 -11.11043 -10.82678 -10.28233 -9.47377 -4.99335 -1.24798 -0.55069 0.38065 1.04287 1.15016 1.23174 1.54932 1.58494 1.60101 1.79663 1.88603 2.36364 2.59750 2.83826 3.10603 3.15605 3.18706 3.25677 3.43107 3.43228 3.62363 3.66052 3.69525 3.83927 3.86723 3.89159 3.94588 4.10400 4.19208 4.24673 4.36002 4.36981 4.47912 4.50942 4.57096 4.61477 4.64001 4.68832 4.70330 4.75970 4.86115 4.87325 4.98604 5.06011 5.07947 5.15622 5.21914 5.25886 5.38805 5.74551 6.16748 6.29552 6.82267 7.11303 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.001855 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.656643 B =15088.428142 C =15602.123482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.443 0.557 5 C 0.052 3.948 6 H 0.156 0.844 7 C -0.136 4.136 8 C -0.127 4.127 9 C 0.130 3.870 10 H 0.080 0.920 11 N -0.699 5.699 12 C 0.583 3.417 13 O -0.551 6.551 14 C 0.003 3.997 15 C -0.054 4.054 16 C -0.103 4.103 17 C 0.162 3.838 18 C -0.006 4.006 19 C -0.134 4.134 20 C -0.189 4.189 21 C -0.022 4.022 22 C -0.040 4.040 23 O -0.534 6.534 24 Si 0.774 3.226 25 O -0.160 6.160 26 N -0.242 5.242 27 N -0.203 5.203 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.418 0.582 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.391 0.609 41 H -0.286 1.286 42 H -0.288 1.288 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.092 0.908 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.426 22.968 27.805 42.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.019 5.019 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.054 4.054 6 H 0.174 0.826 7 C -0.174 4.174 8 C -0.166 4.166 9 C 0.027 3.973 10 H 0.098 0.902 11 N -0.350 5.350 12 C 0.365 3.635 13 O -0.427 6.427 14 C -0.143 4.143 15 C -0.082 4.082 16 C -0.131 4.131 17 C 0.022 3.978 18 C -0.057 4.057 19 C -0.155 4.155 20 C -0.208 4.208 21 C -0.074 4.074 22 C -0.149 4.149 23 O -0.342 6.342 24 Si 0.678 3.322 25 O -0.057 6.057 26 N -0.088 5.088 27 N -0.050 5.050 28 C -0.173 4.173 29 C -0.175 4.175 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.256 0.744 35 H 0.202 0.798 36 H 0.204 0.796 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.175 0.825 40 H 0.241 0.759 41 H -0.212 1.212 42 H -0.215 1.215 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.418 22.907 27.725 42.379 hybrid contribution -1.416 0.301 -0.880 1.694 sum 21.002 23.208 26.845 41.235 Atomic orbital electron populations 1.42231 1.22130 1.20907 1.16665 0.71681 0.71847 0.72717 1.22857 0.96094 0.96133 0.90298 0.82640 1.21973 1.03938 0.92536 0.98974 1.21755 0.91219 1.02908 1.00704 1.21464 0.95751 0.92908 0.87174 0.90160 1.45958 1.16103 1.54346 1.18583 1.17404 0.82691 0.78334 0.85025 1.90834 1.57285 1.60842 1.33789 1.23037 0.94819 1.00602 0.95860 1.22621 0.94797 0.91017 0.99788 1.22768 1.02142 0.97121 0.91106 1.20135 0.92375 0.93916 0.91355 1.19348 0.86912 1.04435 0.94964 1.22269 1.01729 0.99927 0.91578 1.21883 0.93635 1.02935 1.02374 1.23292 0.99689 1.01639 0.82769 1.24627 0.99292 0.96869 0.94086 1.86674 1.82432 1.33907 1.31192 0.93674 0.75478 0.81463 0.81623 1.83882 1.34732 1.56054 1.31011 1.73333 1.12553 1.06391 1.16559 1.73193 1.27167 1.09306 0.95365 1.21871 1.00905 0.94358 1.00136 1.21947 0.92832 1.03810 0.98894 0.88661 0.86450 0.91011 0.89166 0.74426 0.79829 0.79565 0.81279 0.81397 0.82499 0.75852 1.21179 1.21479 0.90017 0.93493 0.88944 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.62 4.15 -168.68 -0.70 46.92 16 2 H 0.45 -36.57 8.96 -89.69 -0.80 -37.38 16 3 H 0.45 -36.15 8.96 -89.69 -0.80 -36.95 16 4 H 0.44 -34.91 8.90 -89.70 -0.80 -35.71 16 5 C 0.05 -3.35 3.02 44.91 0.14 -3.21 16 6 H 0.16 -10.19 8.14 -2.39 -0.02 -10.21 16 7 C -0.14 7.67 5.43 30.59 0.17 7.84 16 8 C -0.13 5.58 5.39 30.59 0.16 5.75 16 9 C 0.13 -4.66 2.45 44.99 0.11 -4.55 16 10 H 0.08 -2.58 7.58 -2.39 -0.02 -2.59 16 11 N -0.70 18.76 5.07 -445.39 -2.26 16.50 16 12 C 0.58 -10.83 7.77 86.79 0.67 -10.15 16 13 O -0.55 7.57 16.04 -3.89 -0.06 7.50 16 14 C 0.00 -0.05 6.83 41.97 0.29 0.24 16 15 C -0.05 0.94 9.71 22.73 0.22 1.16 16 16 C -0.10 1.73 9.85 22.74 0.22 1.95 16 17 C 0.16 -1.97 6.83 41.78 0.29 -1.68 16 18 C -0.01 0.06 7.04 24.21 0.17 0.23 16 19 C -0.13 1.50 10.60 22.40 0.24 1.73 16 20 C -0.19 2.22 10.77 22.10 0.24 2.46 16 21 C -0.02 0.28 6.22 24.92 0.16 0.43 16 22 C -0.04 0.57 2.98 71.24 0.21 0.78 16 23 O -0.53 6.01 12.87 -148.98 -1.92 4.09 16 24 Si 0.77 -11.11 32.10 68.60 2.20 -8.90 16 25 O -0.16 1.93 8.83 -5.80 -0.05 1.88 16 26 N -0.24 2.56 11.23 -48.55 -0.55 2.01 16 27 N -0.20 2.77 10.73 -48.44 -0.52 2.25 16 28 C -0.13 5.29 5.50 30.61 0.17 5.46 16 29 C -0.14 7.33 5.43 30.61 0.17 7.50 16 30 H 0.09 -5.34 8.14 -2.39 -0.02 -5.36 16 31 H 0.12 -6.98 8.14 -2.38 -0.02 -7.00 16 32 H 0.07 -2.77 8.14 -2.39 -0.02 -2.79 16 33 H 0.09 -4.02 8.14 -2.39 -0.02 -4.04 16 34 H 0.42 -11.70 7.94 -92.71 -0.74 -12.43 16 35 H 0.18 -3.82 7.71 -2.91 -0.02 -3.84 16 36 H 0.19 -4.00 7.96 -2.91 -0.02 -4.03 16 37 H 0.17 -2.20 8.06 -2.91 -0.02 -2.22 16 38 H 0.17 -2.31 8.06 -2.91 -0.02 -2.33 16 39 H 0.16 -2.77 7.96 -2.39 -0.02 -2.78 16 40 H 0.39 -6.51 8.70 -74.06 -0.64 -7.16 16 41 H -0.29 2.68 7.11 99.48 0.71 3.39 16 42 H -0.29 2.07 7.11 99.48 0.71 2.77 16 43 H 0.08 -3.27 8.14 -2.39 -0.02 -3.29 16 44 H 0.05 -1.40 8.14 -2.39 -0.02 -1.42 16 45 H 0.09 -4.91 8.14 -2.39 -0.02 -4.93 16 46 H 0.11 -5.99 8.14 -2.39 -0.02 -6.01 16 Total: 1.00 -95.23 385.12 -2.91 -98.14 By element: Atomic # 1 Polarization: -183.65 SS G_CDS: -2.68 Total: -186.33 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 3.62 Total: 15.93 kcal Atomic # 7 Polarization: 71.71 SS G_CDS: -4.02 Total: 67.68 kcal Atomic # 8 Polarization: 15.51 SS G_CDS: -2.03 Total: 13.47 kcal Atomic # 14 Polarization: -11.11 SS G_CDS: 2.20 Total: -8.90 kcal Total: -95.23 -2.91 -98.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17088014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.899 kcal (2) G-P(sol) polarization free energy of solvation -95.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds