Wall clock time and date at job start Mon Mar 8 2021 07:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00906 * 109.46647 * 1 2 4 4 H 1.00900 * 109.47079 * 240.00531 * 1 2 3 5 5 C 1.46898 * 109.47623 * 120.00205 * 1 2 3 6 6 H 1.09002 * 109.46682 * 299.99852 * 5 1 2 7 7 C 1.52995 * 109.47124 * 59.99858 * 5 1 2 8 8 C 1.52998 * 109.46911 * 180.02562 * 7 5 1 9 9 C 1.53005 * 109.47442 * 300.00019 * 8 7 5 10 10 H 1.09000 * 109.46593 * 300.00316 * 9 8 7 11 11 N 1.46495 * 109.47381 * 180.02562 * 9 8 7 12 12 C 1.34774 * 120.00088 * 155.00116 * 11 9 8 13 13 O 1.21584 * 119.99926 * 359.97438 * 12 11 9 14 14 C 1.47555 * 119.99925 * 179.97438 * 12 11 9 15 15 C 1.40202 * 120.83214 * 179.97438 * 14 12 11 16 16 N 1.31852 * 119.04458 * 179.97438 * 15 14 12 17 17 C 1.33043 * 120.86934 * 0.02562 * 16 15 14 18 18 C 1.47269 * 119.07935 * 179.97438 * 17 16 15 19 19 C 1.36283 * 125.95836 * 179.97438 * 18 17 16 20 20 C 1.40612 * 106.72463 * 179.97438 * 19 18 17 21 21 C 1.34965 * 107.07388 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.64047 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.47152 * 65.00253 * 22 21 20 24 24 Si 1.86305 * 109.47184 * 184.99725 * 22 21 20 25 25 O 1.34106 * 108.72317 * 0.25910 * 21 20 19 26 26 N 1.33048 * 121.83889 * 0.25354 * 17 16 15 27 27 C 1.31850 * 120.86239 * 359.48284 * 26 17 16 28 28 C 1.52998 * 109.46753 * 59.99941 * 9 8 7 29 29 C 1.52998 * 109.47312 * 180.02562 * 5 1 2 30 30 H 1.09002 * 109.47346 * 60.00401 * 7 5 1 31 31 H 1.09002 * 109.47394 * 299.99894 * 7 5 1 32 32 H 1.09003 * 109.47135 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47610 * 60.00325 * 8 7 5 34 34 H 0.97005 * 119.99971 * 335.00082 * 11 9 8 35 35 H 1.07994 * 120.47676 * 359.95722 * 15 14 12 36 36 H 1.08000 * 126.63726 * 359.94552 * 19 18 17 37 37 H 1.07995 * 126.46284 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47198 * 304.99931 * 22 21 20 39 39 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 40 40 H 1.48497 * 110.00233 * 300.00062 * 24 22 21 41 41 H 1.48492 * 109.99800 * 61.32455 * 24 22 21 42 42 H 1.08001 * 120.47248 * 180.25975 * 27 26 17 43 43 H 1.09001 * 109.46892 * 60.00106 * 28 9 8 44 44 H 1.08999 * 109.47195 * 180.02562 * 28 9 8 45 45 H 1.09001 * 109.47345 * 299.99867 * 29 5 1 46 46 H 1.09000 * 109.47358 * 59.99950 * 29 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9514 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4898 -0.6925 -1.1994 6 1 -0.1265 -0.1786 -2.0894 7 6 0.0202 -2.1350 -1.1994 8 6 -0.4895 -2.8560 -2.4489 9 6 -2.0195 -2.8560 -2.4494 10 1 -2.3831 -3.3699 -1.5596 11 7 -2.5074 -3.5469 -3.6455 12 6 -3.7294 -4.1154 -3.6440 13 8 -4.4266 -4.0552 -2.6498 14 6 -4.2211 -4.8108 -4.8489 15 6 -5.4891 -5.4087 -4.8664 16 7 -5.8933 -6.0205 -5.9622 17 6 -5.1154 -6.0749 -7.0402 18 6 -5.6061 -6.7690 -8.2427 19 6 -4.9305 -6.9082 -9.4181 20 6 -5.7684 -7.6343 -10.2829 21 6 -6.9036 -7.9011 -9.6034 22 6 -8.0894 -8.6614 -10.1388 23 8 -7.7090 -10.0136 -10.4018 24 14 -9.4629 -8.6364 -8.8803 25 8 -6.8044 -7.3722 -8.3750 26 7 -3.9042 -5.5245 -7.0602 27 6 -3.4318 -4.8907 -6.0049 28 6 -2.5294 -1.4135 -2.4494 29 6 -2.0198 -0.6919 -1.1996 30 1 -0.3431 -2.6488 -0.3094 31 1 1.1102 -2.1350 -1.1995 32 1 -0.1265 -3.8838 -2.4487 33 1 -0.1258 -2.3422 -3.3387 34 1 -1.9510 -3.5952 -4.4386 35 1 -6.1255 -5.3690 -3.9948 36 1 -3.9429 -6.5329 -9.6421 37 1 -5.5459 -7.9233 -11.2994 38 1 -8.4337 -8.1947 -11.0617 39 1 -8.4247 -10.5629 -10.7500 40 1 -9.0062 -9.2700 -7.6173 41 1 -9.8894 -7.2378 -8.6217 42 1 -2.4495 -4.4426 -6.0295 43 1 -2.1657 -0.8995 -3.3392 44 1 -3.6194 -1.4133 -2.4493 45 1 -2.3835 -1.2054 -0.3096 46 1 -2.3827 0.3359 -1.1998 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081478_17119452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:39:09 Heat of formation + Delta-G solvation = 81.766042 kcal Electronic energy + Delta-G solvation = -29234.201740 eV Core-core repulsion = 25016.723246 eV Total energy + Delta-G solvation = -4217.478494 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.04837 -42.54054 -41.37824 -40.31176 -37.94678 -37.47286 -35.54535 -35.01472 -34.31589 -33.86940 -32.01354 -31.62153 -29.49219 -27.81160 -26.04842 -25.33018 -24.20256 -23.62340 -23.00322 -22.17421 -21.68886 -21.52411 -19.69458 -19.36396 -18.98248 -18.75183 -18.45137 -18.28346 -17.51727 -17.48339 -17.20495 -17.05800 -16.59199 -16.01448 -15.97883 -15.76844 -15.73895 -15.15846 -15.07411 -14.78524 -14.55381 -14.29299 -14.23317 -14.15838 -14.10470 -13.69134 -13.37746 -13.13825 -12.92323 -12.80537 -12.50477 -12.48262 -12.30806 -12.26164 -11.70588 -11.64176 -11.51128 -11.31146 -11.12422 -10.77881 -10.53891 -10.30260 -9.59982 -5.16711 -1.39798 -0.32535 0.26490 1.05432 1.07470 1.22514 1.54186 1.54697 1.60136 1.81588 1.94591 2.33755 2.42971 2.72618 3.02706 3.09865 3.24612 3.31289 3.32869 3.52783 3.63319 3.64764 3.68856 3.71190 3.75648 3.88502 3.94012 4.10323 4.20939 4.21625 4.28271 4.35781 4.43020 4.47378 4.52395 4.55113 4.62565 4.70500 4.72919 4.78647 4.86269 4.98047 5.05699 5.08185 5.14911 5.17345 5.22112 5.37864 5.42938 5.65779 6.19284 6.47225 6.77518 6.87937 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.001863 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.354051 B =15028.741366 C =15572.052756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.160 0.840 7 C -0.139 4.139 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.073 0.927 11 N -0.706 5.706 12 C 0.580 3.420 13 O -0.563 6.563 14 C -0.250 4.250 15 C 0.203 3.797 16 N -0.546 5.546 17 C 0.405 3.595 18 C -0.019 4.019 19 C -0.110 4.110 20 C -0.180 4.180 21 C -0.005 4.005 22 C -0.036 4.036 23 O -0.557 6.557 24 Si 0.800 3.200 25 O -0.182 6.182 26 N -0.507 5.507 27 C 0.209 3.791 28 C -0.134 4.134 29 C -0.139 4.139 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.416 0.584 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.137 0.863 39 H 0.416 0.584 40 H -0.312 1.312 41 H -0.297 1.297 42 H 0.233 0.767 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.306 25.737 21.431 41.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.021 5.021 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.053 4.053 6 H 0.177 0.823 7 C -0.177 4.177 8 C -0.164 4.164 9 C 0.029 3.971 10 H 0.091 0.909 11 N -0.357 5.357 12 C 0.365 3.635 13 O -0.442 6.442 14 C -0.258 4.258 15 C 0.037 3.963 16 N -0.260 5.260 17 C 0.144 3.856 18 C -0.070 4.070 19 C -0.131 4.131 20 C -0.199 4.199 21 C -0.056 4.056 22 C -0.146 4.146 23 O -0.370 6.370 24 Si 0.707 3.293 25 O -0.079 6.079 26 N -0.222 5.222 27 C 0.041 3.959 28 C -0.173 4.173 29 C -0.177 4.177 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.255 0.745 35 H 0.204 0.796 36 H 0.206 0.794 37 H 0.204 0.796 38 H 0.154 0.846 39 H 0.270 0.730 40 H -0.241 1.241 41 H -0.224 1.224 42 H 0.249 0.751 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 24.485 25.662 22.347 41.922 hybrid contribution 0.308 0.201 0.436 0.571 sum 24.793 25.863 22.783 42.458 Atomic orbital electron populations 1.42254 1.22140 1.20929 1.16762 0.71666 0.71879 0.72818 1.22875 0.95890 0.96204 0.90315 0.82295 1.21986 1.03976 0.92508 0.99197 1.21764 0.90882 1.03040 1.00741 1.21385 0.95802 0.92656 0.87248 0.90911 1.45828 1.15942 1.55407 1.18565 1.17497 0.82487 0.77982 0.85494 1.90837 1.57450 1.60900 1.34999 1.21900 0.98586 1.06753 0.98529 1.23735 0.93032 0.84936 0.94627 1.68674 1.36736 1.19578 1.01030 1.19907 0.86892 0.89979 0.88828 1.19459 0.86015 1.06268 0.95231 1.22355 1.01894 0.98631 0.90255 1.21998 0.92537 1.02168 1.03201 1.22469 1.00041 1.00518 0.82616 1.23927 0.96960 0.85357 1.08307 1.86402 1.43158 1.19045 1.88361 0.94431 0.79749 0.79414 0.75713 1.84026 1.34336 1.56546 1.32982 1.68299 1.11896 1.11133 1.30827 1.24230 0.99669 0.87513 0.84465 1.21869 1.00705 0.94551 1.00160 1.21953 0.93026 1.03728 0.99013 0.89134 0.86368 0.90746 0.88366 0.74515 0.79567 0.79360 0.79634 0.84609 0.73041 1.24083 1.22416 0.75141 0.89365 0.93933 0.89468 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.15 4.15 -168.69 -0.70 47.45 16 2 H 0.45 -36.93 8.96 -89.70 -0.80 -37.74 16 3 H 0.45 -36.36 8.96 -89.69 -0.80 -37.16 16 4 H 0.44 -34.93 8.90 -89.69 -0.80 -35.73 16 5 C 0.05 -3.48 3.02 44.91 0.14 -3.34 16 6 H 0.16 -10.76 8.14 -2.39 -0.02 -10.78 16 7 C -0.14 8.05 5.43 30.59 0.17 8.22 16 8 C -0.13 5.97 5.39 30.60 0.16 6.13 16 9 C 0.13 -5.12 2.45 44.99 0.11 -5.01 16 10 H 0.07 -2.40 7.58 -2.39 -0.02 -2.42 16 11 N -0.71 22.80 5.03 -445.69 -2.24 20.56 16 12 C 0.58 -12.16 7.74 86.70 0.67 -11.49 16 13 O -0.56 7.22 16.09 -3.98 -0.06 7.16 16 14 C -0.25 4.35 5.91 -19.87 -0.12 4.23 16 15 C 0.20 -1.96 10.87 85.17 0.93 -1.04 16 16 N -0.55 1.47 10.34 -188.57 -1.95 -0.48 16 17 C 0.41 -1.73 7.57 136.95 1.04 -0.69 16 18 C -0.02 0.04 7.15 24.19 0.17 0.21 16 19 C -0.11 0.78 10.55 22.39 0.24 1.02 16 20 C -0.18 1.33 10.78 22.10 0.24 1.56 16 21 C 0.00 0.02 6.24 24.93 0.16 0.18 16 22 C -0.04 0.39 2.98 71.24 0.21 0.61 16 23 O -0.56 6.47 12.86 -148.98 -1.92 4.56 16 24 Si 0.80 -7.38 32.11 68.60 2.20 -5.18 16 25 O -0.18 -0.28 9.05 -5.54 -0.05 -0.33 16 26 N -0.51 5.94 10.06 -188.57 -1.90 4.04 16 27 C 0.21 -4.34 10.80 85.17 0.92 -3.42 16 28 C -0.13 5.56 5.50 30.61 0.17 5.73 16 29 C -0.14 7.57 5.43 30.61 0.17 7.73 16 30 H 0.09 -5.14 8.14 -2.39 -0.02 -5.16 16 31 H 0.12 -7.24 8.14 -2.39 -0.02 -7.26 16 32 H 0.07 -3.17 8.14 -2.39 -0.02 -3.19 16 33 H 0.10 -4.89 8.14 -2.39 -0.02 -4.91 16 34 H 0.42 -15.95 6.72 -92.70 -0.62 -16.57 16 35 H 0.19 -2.11 7.73 -2.91 -0.02 -2.13 16 36 H 0.19 -2.40 8.06 -2.91 -0.02 -2.42 16 37 H 0.19 -2.37 8.06 -2.91 -0.02 -2.39 16 38 H 0.14 -2.47 7.96 -2.39 -0.02 -2.49 16 39 H 0.42 -9.51 8.74 -74.06 -0.65 -10.16 16 40 H -0.31 -0.44 7.11 99.48 0.71 0.27 16 41 H -0.30 0.62 7.11 99.48 0.71 1.33 16 42 H 0.23 -7.74 6.52 -2.91 -0.02 -7.76 16 43 H 0.09 -3.83 8.14 -2.39 -0.02 -3.85 16 44 H 0.04 -1.31 8.14 -2.39 -0.02 -1.32 16 45 H 0.09 -4.61 8.14 -2.39 -0.02 -4.63 16 46 H 0.11 -5.94 8.14 -2.39 -0.02 -5.96 16 Total: 1.00 -110.22 383.19 -3.82 -114.04 By element: Atomic # 1 Polarization: -199.88 SS G_CDS: -2.56 Total: -202.44 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.36 Total: 10.63 kcal Atomic # 7 Polarization: 78.36 SS G_CDS: -6.79 Total: 71.57 kcal Atomic # 8 Polarization: 13.41 SS G_CDS: -2.03 Total: 11.38 kcal Atomic # 14 Polarization: -7.38 SS G_CDS: 2.20 Total: -5.18 kcal Total: -110.22 -3.82 -114.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081478_17119452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.803 kcal (2) G-P(sol) polarization free energy of solvation -110.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds